메뉴 건너뛰기




Volumn 3, Issue , 2011, Pages 347-371

Microbial metagenomics: Beyond the genome

Author keywords

annotation; bacteria; bioinformatics; communities; function; next generation sequencing

Indexed keywords

ANNOTATION; BASE PAIRS; BIOINFORMATIC ANALYSIS; COLLABORATIVE COMMUNITY; GLOBAL OCEAN; METAGENOMICS; MICROBIAL COMMUNITIES; MICROBIAL ECOLOGY; NEXT GENERATION SEQUENCING;

EID: 79953007909     PISSN: 19411405     EISSN: 19410611     Source Type: Journal    
DOI: 10.1146/annurev-marine-120709-142811     Document Type: Article
Times cited : (280)

References (139)
  • 1
    • 33646471390 scopus 로고    scopus 로고
    • An ecological and evolutionary context for integrated nitrogenmetabolism and related signaling pathways in marine diatoms
    • Allen AE, Vardi A, Bowler C. 2006. An ecological and evolutionary context for integrated nitrogenmetabolism and related signaling pathways in marine diatoms. Curr. Opin. Plant Biol. 9:264-73
    • (2006) Curr. Opin. Plant Biol. , vol.9 , pp. 264-273
    • Allen, A.E.1    Vardi, A.2    Bowler, C.3
  • 2
    • 77951299169 scopus 로고    scopus 로고
    • Predicting protein crystallization propensity from protein sequence
    • BabniggG, Joachimiak A. 2010. Predicting protein crystallization propensity from protein sequence. J. Struct. Funct. Genomics 11:71-80
    • (2010) J. Struct. Funct. Genomics , vol.11 , pp. 71-80
    • Babnigg, G.1    Joachimiak, A.2
  • 3
    • 0037841805 scopus 로고    scopus 로고
    • The deep roots of eukaryotes
    • DOI 10.1126/science.1085544
    • Baldauf S. 2003. The deep roots of eukaryotes. Science 300:1703-6 (Pubitemid 36712557)
    • (2003) Science , vol.300 , Issue.5626 , pp. 1703-1706
    • Baldauf, S.L.1
  • 4
    • 2942541402 scopus 로고    scopus 로고
    • To BAC or not to BAC: Marine ecogenomics
    • DOI 10.1016/j.copbio.2004.03.005, PII S0958166904000473
    • Béjà O. 2004. To BAC or not to BAC: Marine ecogenomics. Curr. Opin. Biotechnol. 15:187-90 (Pubitemid 38749039)
    • (2004) Current Opinion in Biotechnology , vol.15 , Issue.3 , pp. 187-190
    • Beja, O.1
  • 5
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Béjà O, Aravind L, Koonin EV, SuzukiMT, Hadd A, et al. 2000. Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289:1902-4
    • (2000) Science , vol.289 , pp. 1902-1904
    • Béjà, O.1    Aravind, L.2    Koonin, E.V.3    Suzuki, M.T.4    Hadd, A.5
  • 7
    • 77149143533 scopus 로고    scopus 로고
    • Comparative community genomics in the Dead Sea: An increasingly extreme environment
    • Bodaker I, Sharon I, Suzuki MT, Feingersch R, Shmoish M. 2010. Comparative community genomics in the Dead Sea: An increasingly extreme environment. ISME J. 4:399-407
    • (2010) ISME J. , vol.4 , pp. 399-407
    • Bodaker, I.1    Sharon, I.2    Suzuki, M.T.3    Feingersch, R.4    Shmoish, M.5
  • 9
    • 72649088719 scopus 로고    scopus 로고
    • Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
    • Brazelton WJ,Baross JA. 2009. Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J. 3:1420-24
    • (2009) ISME J. , vol.3 , pp. 1420-1424
    • Brazelton, W.J.1    Baross, J.A.2
  • 11
    • 55449131166 scopus 로고    scopus 로고
    • Bioinformatics for whole-genome shotgun sequencing of microbial communities
    • Chen K, Pachter L. 2005. Bioinformatics for whole-genome shotgun sequencing of microbial communities. PLoS Comp. Biol. 1:24
    • (2005) PLoS Comp. Biol. , vol.1 , pp. 24
    • Chen, K.1    Pachter, L.2
  • 14
    • 38549098458 scopus 로고    scopus 로고
    • Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine α-proteobacteria and Rhodobacter sphaeroides
    • DOI 10.1111/j.1462-2920.2007.01499.x
    • Curson ARJ, Rogers R, Todd JD, Brearley CA, JohnstonAWB. 2008. Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine a- proteobacteria and Rhodobacter sphaeroides. Environ. Microbiol. 10:757-67 (Pubitemid 351160915)
    • (2008) Environmental Microbiology , vol.10 , Issue.3 , pp. 757-767
    • Curson, A.R.J.1    Rogers, R.2    Todd, J.D.3    Brearley, C.A.4    Johnston, A.W.B.5
  • 16
    • 19144362371 scopus 로고    scopus 로고
    • Microbial community genomics in the ocean
    • Delong EF. 2005. Microbial community genomics in the ocean. Nat. Rev. Microbiol. 3:459-69
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 459-469
    • Delong, E.F.1
  • 21
    • 84860168244 scopus 로고    scopus 로고
    • Marine environmental genomics: Unlocking the ocean's secrets
    • Edwards RA,Dinsdale EA. 2007. Marine environmental genomics: Unlocking the ocean's secrets. Oceanography 20:26-61
    • (2007) Oceanography , vol.20 , pp. 26-61
    • Edwards, R.A.1    Dinsdale, E.A.2
  • 23
    • 1842581812 scopus 로고    scopus 로고
    • Shotgun sequencing in the sea: A blast from the past?
    • DOI 10.1126/science.1097146
    • Falkowski PG, Vargas C. 2004. Shotgun sequencing in the sea: A blast from the past? Science 304:58-60 (Pubitemid 38451452)
    • (2004) Science , vol.304 , Issue.5667 , pp. 58-60
    • Falkowski, P.G.1    De Vargas, C.2
  • 24
    • 43449108562 scopus 로고    scopus 로고
    • Towards a richer description of our complete collection of genomes and metagenomes: The Minimum Information about a Genome Sequence (MIGS) specification
    • Field D, Joint I, Gilbert JA, et al. 2008. Towards a richer description of our complete collection of genomes and metagenomes: The "Minimum Information about a Genome Sequence" (MIGS) specification. Nat. Biotechnol. 26:541-47
    • (2008) Nat. Biotechnol. , vol.26 , pp. 541-547
    • Field, D.1    Joint, I.2    Gilbert, J.A.3
  • 26
    • 43849084187 scopus 로고    scopus 로고
    • Proteorhodopsins: An array of physiological roles?
    • DOI 10.1038/nrmicro1893, PII NRMICRO1893
    • Fuhrman JA, Schwalbach MS, Stingl U. 2008. Proteorhodopsins: An array of physiological roles? Nat. Rev. Microbiol. 6:488-94 (Pubitemid 351696441)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.6 , pp. 488-494
    • Fuhrman, J.A.1    Schwalbach, M.S.2    Stingl, U.3
  • 30
    • 84856630622 scopus 로고    scopus 로고
    • Aquatic metagenome library (archive; expression) generation and analysis
    • ed. K Timmis, Berlin Springer
    • Gilbert JA. 2010. Aquatic metagenome library (archive; expression) generation and analysis. In Handbook of Hydrocarbon and Lipid Microbiology, ed. K Timmis, pp. 4347-52. Berlin: Springer
    • (2010) Handbook of Hydrocarbon and Lipid Microbiology , pp. 4347-4352
    • Gilbert, J.A.1
  • 31
    • 52449114817 scopus 로고    scopus 로고
    • Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
    • Gilbert JA, Field D, Huang Y, Edwards R, Li W, et al. 2008a. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS ONE 3:e3042
    • (2008) PLoS ONE , vol.3
    • Gilbert, J.A.1    Field, D.2    Huang, Y.3    Edwards, R.4    Li, W.5
  • 32
    • 46749116439 scopus 로고    scopus 로고
    • A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome
    • DOI 10.1038/ismej.2008.49, PII ISMEJ200849
    • Gilbert JA, Mühling M, Joint I. 2008b. A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome. ISME J. 2:790-93 (Pubitemid 351951571)
    • (2008) ISME Journal , vol.2 , Issue.7 , pp. 790-793
    • Gilbert, J.A.1    Muhling, M.2    Joint, I.3
  • 33
    • 58149240855 scopus 로고    scopus 로고
    • Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters
    • Gilbert J,Thomas S,Cooley NA,KulakovaAN, FieldD, et al. 2009. Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters. Environ. Microbiol. 11:111-25
    • (2009) Environ. Microbiol. , vol.11 , pp. 111-125
    • Gilbert, J.1    Thomas, S.2    Cooley, N.A.3    Kulakova, A.N.4    Field, D.5
  • 34
    • 25144486755 scopus 로고    scopus 로고
    • Molecular diversity and ecology of microbial plankton
    • DOI 10.1038/nature04158, PII N04158
    • Giovannoni SJ, Stingl U. 2005. Molecular diversity and ecology of microbial plankton. Nature 437:343-48 (Pubitemid 41613489)
    • (2005) Nature , vol.437 , Issue.7057 , pp. 343-348
    • Giovannoni, S.J.1    Stingl, U.2
  • 35
    • 33746808240 scopus 로고    scopus 로고
    • Genomic scale sub-family assignment of protein domains
    • DOI 10.1093/nar/gkl484
    • Gough J. 2006. Genomic scale subfamily assignment of protein domains. Nucleic Acids Res. 34:3625-33 (Pubitemid 44400412)
    • (2006) Nucleic Acids Research , vol.34 , Issue.13 , pp. 3625-3633
    • Gough, J.1
  • 36
    • 33744922635 scopus 로고    scopus 로고
    • Capturing the uncultivated majority
    • DOI 10.1016/j.copbio.2006.05.004, PII S0958166906000632, Environmental Biotechnology/Energy Biotechnology
    • Green BD, Keller M. 2006. Capturing the uncultivated majority. Curr. Opin. Biotechnol. 17:236-40 (Pubitemid 43850262)
    • (2006) Current Opinion in Biotechnology , vol.17 , Issue.3 , pp. 236-240
    • Green, B.D.1    Keller, M.2
  • 39
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: Application of genomics to uncultured microorganisms
    • DOI 10.1128/MMBR.68.4.669-685.2004
    • Handelsman J. 2004. Metagenomics: Application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68:669-85 (Pubitemid 39628532)
    • (2004) Microbiology and Molecular Biology Reviews , vol.68 , Issue.4 , pp. 669-685
    • Handelsman, J.1
  • 40
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM. 1998. Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products. Chem. Biol. 5:245-49
    • (1998) Chem. Biol. , vol.5 , pp. 245-249
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 41
    • 33846247798 scopus 로고    scopus 로고
    • Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment
    • DOI 10.1111/j.1574-6941.2006.00206.x
    • Hardeman F, Sjoling S. 2007. Metagenomic approach for the isolation of a novel low-temperature-Active lipase from uncultured bacteria of marine sediment. FEMS Microbiol. Ecol. 59:524-34 (Pubitemid 46105889)
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.2 , pp. 524-534
    • Hardeman, F.1    Sjoling, S.2
  • 43
    • 77956696072 scopus 로고    scopus 로고
    • Model SEED: A resource for high-throughput generation, optimization, and analysis of genome-scale metabolic models
    • Henry CS, DeJongh M, Best AB, Frybarger PM, Linsay B, Stevens RL. 2010. Model SEED: A resource for high-throughput generation, optimization, and analysis of genome-scale metabolic models. Nat. Biotechnol. 28:977-82
    • (2010) Nat. Biotechnol. , vol.28 , pp. 977-982
    • Henry, C.S.1    Dejongh, M.2    Best, A.B.3    Frybarger, P.M.4    Linsay, B.5    Stevens, R.L.6
  • 44
    • 70349941131 scopus 로고    scopus 로고
    • Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat
    • Hewson I, Paerl RW, Tripp HJ, Zehr JP, Karl DM. 2009. Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat. Limnol. Oceanogr. 54:1981-94
    • (2009) Limnol. Oceanogr. , vol.54 , pp. 1981-1994
    • Hewson, I.1    Paerl, R.W.2    Tripp, H.J.3    Zehr, J.P.4    Karl, D.M.5
  • 45
    • 58849093591 scopus 로고    scopus 로고
    • Characterization of a deep-sea sediment metagenomic clone that produces water-soluble melanin in Escherichia coli
    • Huang Y, Lai X, He X, Cao L, Zeng Z, et al. 2009. Characterization of a deep-sea sediment metagenomic clone that produces water-soluble melanin in Escherichia coli. Mar. Biotechnol. 11:124-31
    • (2009) Mar. Biotechnol. , vol.11 , pp. 124-131
    • Huang, Y.1    Lai, X.2    He, X.3    Cao, L.4    Zeng, Z.5
  • 47
    • 0035811487 scopus 로고    scopus 로고
    • Morphological and ecological complexity in early eukaryotic ecosystems
    • Javaux EJ, Knoll AH,Walter MR. 2001. Morphological and ecological complexity in early eukaryotic ecosystems. Nature 412:86-69
    • (2001) Nature , vol.412 , pp. 86-69
    • Javaux, E.J.1    Knoll, A.H.2    Walter, M.R.3
  • 48
    • 23944482384 scopus 로고    scopus 로고
    • Metagenomic marine nitrogen fixation - Feast or famine?
    • DOI 10.1016/j.tim.2005.07.002, PII S0966842X05001885
    • Johnston AWB, Li Y, Ogilvie L. 2005. Metagenomic marine nitrogen fixation-Feast or famine? Trends Microbiol. 13:416-20 (Pubitemid 41207175)
    • (2005) Trends in Microbiology , vol.13 , Issue.9 , pp. 416-420
    • Johnston, A.W.B.1    Li, Y.2    Ogilvie, L.3
  • 49
    • 34548716455 scopus 로고    scopus 로고
    • Microbial oceanography: Paradigms, processes and promise
    • DOI 10.1038/nrmicro1749, PII NRMICRO1749
    • Karl DM. 2007. Microbial oceanography: Paradigms, processes and promise. Nat. Rev. Microbiol. 5:759-69 (Pubitemid 47430447)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.10 , pp. 759-769
    • Karl, D.M.1
  • 50
    • 34247628549 scopus 로고    scopus 로고
    • Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges
    • DOI 10.1007/s00253-007-0875-2
    • Kennedy J, Marchesi JR, Dobson ADW. 2007. Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges. Appl. Microbiol. Biotechnol. 75:11-20 (Pubitemid 46669238)
    • (2007) Applied Microbiology and Biotechnology , vol.75 , Issue.1 , pp. 11-20
    • Kennedy, J.1    Marchesi, J.R.2    Dobson, A.D.W.3
  • 51
    • 52449101850 scopus 로고    scopus 로고
    • Marine metagenomics: Strategies for the discovery of novel enzymes with biotechnological applications from marine environments
    • Kennedy J, Marchesi JR, Dobson ADW. 2008. Marine metagenomics: Strategies for the discovery of novel enzymes with biotechnological applications from marine environments. Microb. Cell Fact. 7:27
    • (2008) Microb. Cell Fact. , vol.7 , pp. 27
    • Kennedy, J.1    Marchesi, J.R.2    Adw, D.3
  • 52
    • 58149357670 scopus 로고    scopus 로고
    • Novel cold-Adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases
    • Kim EY, Oh K-H, Lee M-H, Kang C-H, Ph T-K, et al. 2009. Novel cold-Adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases. Appl. Env. Microbiol. 75:257-60
    • (2009) Appl. Env. Microbiol. , vol.75 , pp. 257-260
    • Kim, E.Y.1    Oh, K.-H.2    Lee, M.-H.3    Kang, C.-H.4    Ph, T.-K.5
  • 53
    • 33745782501 scopus 로고    scopus 로고
    • Diversity of polyketide synthase genes from bacteria associated with the marine sponge Pseudoceratina clavata: Culture-dependent and culture-independent approaches
    • DOI 10.1111/j.1462-2920.2006.01040.x
    • Kim TK, Fuerst JA. 2006. Diversity of polyketide synthase genes from bacteria associated with the marine sponge Pseudoceratina clavata: Culture-dependent and culture-independent approaches. Environ.Microbiol. 8:1460-70 (Pubitemid 44025338)
    • (2006) Environmental Microbiology , vol.8 , Issue.8 , pp. 1460-1470
    • Tae, K.K.1    Fuerst, J.A.2
  • 54
    • 76749117156 scopus 로고    scopus 로고
    • Assembly complexity of prokaryotic genomes using short reads
    • Kingsford C, SchatzMC, PopM. 2010. Assembly complexity of prokaryotic genomes using short reads. BMC Bioinforma. 11:21
    • (2010) BMC Bioinforma. , vol.11 , pp. 21
    • Kingsford, C.1    Schatz, M.C.2    Pop, M.3
  • 57
    • 43049085945 scopus 로고    scopus 로고
    • The eukaryotic tree of life: Endosymbiosis takes its TOL
    • DOI 10.1016/j.tree.2008.02.004, PII S0169534708001055
    • Lane CE, Archibald JM. 2008. The eukaryotic tree of life: Endosymbiosis takes its TOL. Trends Ecol. Evol. 23:268-75 (Pubitemid 351626208)
    • (2008) Trends in Ecology and Evolution , vol.23 , Issue.5 , pp. 268-275
    • Lane, C.E.1    Archibald, J.M.2
  • 58
    • 67651246832 scopus 로고    scopus 로고
    • Testing the water: Marine metagenomics
    • Langridge G. 2009. Testing the water: Marine metagenomics. Nature 7:552
    • (2009) Nature , vol.7 , pp. 552
    • Langridge, G.1
  • 59
    • 33750971458 scopus 로고    scopus 로고
    • Isolation and characterization of a novel lipase from a metagenomic library of tidal flat sediments: Evidence for a new family of bacterial lipases
    • DOI 10.1128/AEM.01157-06
    • LeeM-H, Lee C-H, Oh T-K, Song JK, Yoon J-H. 2006. Isolation and characterization of a novel lipase from a metagenomic library of tidal flat sediments: Evidence for a new family of bacterial lipases. Appl. Env. Microbiol. 72:7406-9 (Pubitemid 44748467)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.11 , pp. 7406-7409
    • Lee, M.-H.1    Lee, C.-H.2    Oh, T.-K.3    Song, J.K.4    Yoon, J.-H.5
  • 60
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • DOI 10.1093/bioinformatics/btl158
    • Li W, Godzik A. 2006. Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658-59 (Pubitemid 43985301)
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 61
    • 69149100641 scopus 로고    scopus 로고
    • Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans
    • LiuH, Probert I, Ultz J, Claustre H, Aris-Brosou S, et al. 2009. Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans. Proc. Natl. Acad. Sci. USA 106:12803-8
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 12803-12808
    • LiuH Probert, I.1    Ultz, J.2    Claustre, H.3    Aris-Brosou, S.4
  • 62
    • 75849143326 scopus 로고    scopus 로고
    • Subcellular localization of marine bacterial alkaline phophatases
    • Luo H, Benner R, Long RA, Hu J. 2009. Subcellular localization of marine bacterial alkaline phophatases. Proc. Natl. Acad. Sci. USA 106:21219-23
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 21219-21223
    • Luo, H.1    Benner, R.2    Long, R.A.3    Hu, J.4
  • 63
    • 48549097151 scopus 로고    scopus 로고
    • Metagenomics and the niche concept
    • Marco D. 2008. Metagenomics and the niche concept. Theory Biosci. 127:241-47
    • (2008) Theory Biosci. , vol.127 , pp. 241-247
    • Marco, D.1
  • 66
    • 73349117182 scopus 로고    scopus 로고
    • Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses
    • Martinez A, Tyson GW,Delong EF. 2010. Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environ.Microbiol. 12:222-38
    • (2010) Environ.Microbiol. , vol.12 , pp. 222-238
    • Martinez, A.1    Tyson, G.W.2    Delong, E.F.3
  • 67
    • 66649098780 scopus 로고    scopus 로고
    • Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions
    • Martiny AC, Huang Y, Li W. 2009. Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions. Environ. Microbiol. 11:1340-47
    • (2009) Environ. Microbiol. , vol.11 , pp. 1340-1347
    • Martiny, A.C.1    Huang, Y.2    Li, W.3
  • 69
    • 41849140462 scopus 로고    scopus 로고
    • Metagenomic retrieval of a ribosomal DNA repeat array from an uncultured marine alveolate
    • DOI 10.1111/j.1462-2920.2007.01549.x
    • Massana R, Karniol B, Pommier T, Bodaker I, Beja O. 2008. Metagenomic retrieval of a ribosomal DNA repeat array from an uncultured marine aveolate. Environ. Microbiol. 10:1335-43 (Pubitemid 351499249)
    • (2008) Environmental Microbiology , vol.10 , Issue.5 , pp. 1335-1343
    • Massana, R.1    Karniol, B.2    Pommier, T.3    Bodaker, I.4    Beja, O.5
  • 70
    • 45849119808 scopus 로고    scopus 로고
    • Unveiling new microbial eukaryotes in the surface ocean
    • Massana R, Pedr ós-Alió C. 2008. Unveiling new microbial eukaryotes in the surface ocean. Curr. Opin. Microbiol. 11:213-18
    • (2008) Curr. Opin. Microbiol. , vol.11 , pp. 213-218
    • Massana, R.1    Pedrós-Alió, C.2
  • 72
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis ofmetagenomes
    • Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. 2008. The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis ofmetagenomes. BMC Bioinforma. 9:386
    • (2008) BMC Bioinforma. , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5
  • 73
    • 77956995596 scopus 로고    scopus 로고
    • Comparison of multiple metagenomes using phylogenetic networks based on ecological indices
    • Mitra S, Gilbert JA, Field D, Huson DH. 2010. Comparison of multiple metagenomes using phylogenetic networks based on ecological indices. ISME J. 4:1236-42
    • (2010) ISME J , vol.4 , pp. 1236-1242
    • Mitra, S.1    Gilbert, J.A.2    Field, D.3    Huson, D.H.4
  • 74
    • 77956095453 scopus 로고    scopus 로고
    • Metagenomic sequencing of an in vitro-simulated microbial community
    • Morgan JL, Darling AE, Eisen JA. 2010. Metagenomic sequencing of an in vitro-simulated microbial community. PLoS ONE 5:e10209
    • (2010) PLoS ONE , vol.5
    • Morgan, J.L.1    Darling, A.E.2    Eisen, J.A.3
  • 75
    • 38949113807 scopus 로고    scopus 로고
    • Bacterial carbon processing by generalist species in the coastal ocean
    • Mou X, Sun S, Edwards RA, Hodson RE,Moran MA. 2008. Bacterial carbon processing by generalist species in the coastal ocean. Nature 451:708-13
    • (2008) Nature , vol.451 , pp. 708-713
    • Mou, X.1    Sun, S.2    Edwards, R.A.3    Hodson, R.E.4    Moran, M.A.5
  • 76
    • 28644452091 scopus 로고    scopus 로고
    • Lateral gene transfer and phylogenetic assignment of environmental fosmid clones
    • DOI 10.1111/j.1462-2920.2005.00918.x
    • Nesbø CL, Boucher Y, DlutekM, DoolittleWF. 2005. Lateral gene transfer and phylogenetic assignment of environmental fosmid clones. Environ. Microbiol. 7:2011-26 (Pubitemid 41752388)
    • (2005) Environmental Microbiology , vol.7 , Issue.12 , pp. 2011-2026
    • Nesbo, C.L.1    Boucher, Y.2    Dlutek, M.3    Doolittle, W.F.4
  • 77
    • 40249115825 scopus 로고    scopus 로고
    • Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics
    • DOI 10.1111/j.1462-2920.2008.01568.x
    • Neufeld JD, Chen Y, Dumont MG, Murrell JC. 2008. Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environ. Microbiol. 10:1526-35 (Pubitemid 351670251)
    • (2008) Environmental Microbiology , vol.10 , Issue.6 , pp. 1526-1535
    • Neufeld, J.D.1    Chen, Y.2    Dumont, M.G.3    Murrell, J.C.4
  • 80
    • 58549087183 scopus 로고    scopus 로고
    • Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
    • PalenikB,Ren Q, TaiV, Paulsen IT. 2009. Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity. Environ. Microbiol. 11:349-59
    • (2009) Environ. Microbiol. , vol.11 , pp. 349-359
    • Palenik, B.1    Ren, Q.2    Tai, V.3    Paulsen, I.T.4
  • 82
    • 77951945504 scopus 로고    scopus 로고
    • Identifying biologically relevant differences between metagenomic communities
    • Parks DH, Beiko RG. 2010. Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26:715-21
    • (2010) Bioinformatics , vol.26 , pp. 715-721
    • Parks, D.H.1    Beiko, R.G.2
  • 83
    • 33750582427 scopus 로고    scopus 로고
    • Genomics and marine microbial ecology
    • Pedr ós-Alió C. 2006. Genomics and marine microbial ecology. Int. Microbiol. 9:191-97 (Pubitemid 44683579)
    • (2006) International Microbiology , vol.9 , Issue.3 , pp. 191-197
    • Pedros-Alio, C.1
  • 85
    • 67449095888 scopus 로고    scopus 로고
    • Genome assembly reborn: Recent computational challenges
    • Pop M. 2009. Genome assembly reborn: Recent computational challenges. Brief. Bioinforma. 10:354-66
    • (2009) Brief. Bioinforma. , vol.10 , pp. 354-366
    • Pop, M.1
  • 86
    • 66649089244 scopus 로고    scopus 로고
    • Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
    • Poretsky RS, Hewson I, Sun S, Allen AE, Zehr JP. 2009. Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ. Microbiol. 11:1358-75
    • (2009) Environ. Microbiol. , vol.11 , pp. 1358-1375
    • Poretsky, R.S.1    Hewson, I.2    Sun, S.3    Allen, A.E.4    Zehr, J.P.5
  • 87
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
    • Prosser JL, Nicol GW. 2008. Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ. Microbiol. 10:2931-41
    • (2008) Environ. Microbiol. , vol.10 , pp. 2931-2941
    • Prosser, J.L.1    Nicol, G.W.2
  • 88
    • 34548379026 scopus 로고    scopus 로고
    • New ways to break an old bond: The bacterial carbon-phosphorus hydrolases and their role in biogeochemical phosphorus cycling
    • DOI 10.1111/j.1462-2920.2007.01397.x
    • Quinn JP, Kulakova AN, Cooley NA, McGrath JW. 2007. New ways to break an old bond: The bacterial carbonphosphorus hydrolases and their role in biogeochemical phosphorus cycling. Environ. Microbiol. 9:2392-400 (Pubitemid 47366673)
    • (2007) Environmental Microbiology , vol.9 , Issue.10 , pp. 2392-2400
    • Quinn, J.P.1    Kulakova, A.N.2    Cooley, N.A.3    McGrath, J.W.4
  • 89
    • 57349102353 scopus 로고    scopus 로고
    • Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroy
    • Reisch CR, Moran MA,Whitman WB. 2008. Dimethylsulfoniopropionate- dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroy. J Bacteriol. 190:8018-24
    • (2008) J Bacteriol. , vol.190 , pp. 8018-8024
    • Reisch, C.R.1    Moran, M.A.2    Whitman, W.B.3
  • 90
    • 10944226351 scopus 로고    scopus 로고
    • Metagenomics: Genomic analysis of microbial communities
    • DOI 10.1146/annurev.genet.38.072902.091216
    • Riesenfeld CS, Schloss PD, Handelsman J. 2004. Metagenomics: Genomic analysis of microbial communities. Annu. Rev. Genet. 38:525-52 (Pubitemid 40013737)
    • (2004) Annual Review of Genetics , vol.38 , pp. 525-552
    • Riesenfeld, C.S.1    Schloss, P.D.2    Handelsman, J.3
  • 92
    • 1342300599 scopus 로고    scopus 로고
    • Environmental genomics, the big picture?
    • DOI 10.1016/S0378-1097(04)00006-0
    • Rodriguez-Valera F. 2004. Environmental genomics, the big picture? FEMS Microbiol. Lett. 231:153-58 (Pubitemid 38251593)
    • (2004) FEMS Microbiology Letters , vol.231 , Issue.2 , pp. 153-158
    • Rodriguez-Valera, F.1
  • 95
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. 2007. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol. 5:e77
    • (2007) PLoS Biol. , vol.5
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5
  • 97
    • 0027091904 scopus 로고
    • Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: An inter-ecosystem comparison
    • Sanders RW, Caron DA, BerningerU-G. 1992. Relationships between bacteria and heterotrophic nanoplankton in marine and fresh water: An interecosystem comparison. Mar. Ecol. Prog. Ser. 86:1-14 (Pubitemid 23403136)
    • (1992) Marine Ecology Progress Series , vol.86 , Issue.1 , pp. 1-14
    • Sanders, R.W.1    Caron, D.A.2    Berninger, U.-G.3
  • 99
    • 23744472955 scopus 로고    scopus 로고
    • Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
    • DOI 10.1128/AEM.71.8.4840-4849.2005
    • Schirmer A, Gadkari R, Reeves CD, Ibrahim F, DeLong EF, et al. 2005. Metagenomic analysis reveals diverse polyketide synthase gene clusters inmicroorganisms associated with themarine sponge Discodermia dissolute. Appl. Environ. Microbiol. 71:4840-49 (Pubitemid 41129543)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.8 , pp. 4840-4849
    • Schirmer, A.1    Gadkari, R.2    Reeves, C.D.3    Ibrahim, F.4    DeLong, E.F.5    Hutchinson, C.R.6
  • 101
    • 0037805644 scopus 로고    scopus 로고
    • Biotechnological prospects from metagenomics
    • DOI 10.1016/S0958-1669(03)00067-3
    • Schloss PD, Handelsman J. 2003. Biotechnological prospects from metagenomics. Curr. Opin. Biotechnol. 14:303-10 (Pubitemid 36782660)
    • (2003) Current Opinion in Biotechnology , vol.14 , Issue.3 , pp. 303-310
    • Schloss, P.D.1    Handelsman, J.2
  • 102
    • 23944495106 scopus 로고    scopus 로고
    • Metagenomics for studying unculturable microorganisms: Cutting the Gordian knot
    • Schloss PD, Handelsman J. 2005. Metagenomics for studying unculturable microorganisms: Cutting the Gordian knot. Genome Biol. 6:229
    • (2005) Genome Biol. , vol.6 , pp. 229
    • Schloss, P.D.1    Handelsman, J.2
  • 105
    • 67349186252 scopus 로고    scopus 로고
    • The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA
    • Sebastian M, Ammerman JW. 2009. The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA. ISME J. 3:563-72
    • (2009) ISME J. , vol.3 , pp. 563-572
    • Sebastian, M.1    Ammerman, J.W.2
  • 107
    • 70449589699 scopus 로고    scopus 로고
    • Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic east Pacific Ocean
    • Shi XL,Marie D, Jardillier L, Scanlan DJ, VaulotD. 2009. Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic east Pacific Ocean. PLoS ONE 4:e7657
    • (2009) PLoS ONE , vol.4
    • Shi, X.L.1    Marie, D.2    Jardillier, L.3    Scanlan, D.J.4    Vaulot, D.5
  • 108
    • 65549113872 scopus 로고    scopus 로고
    • Metagenomics: Concept, methodology, ecological inference and recent advances
    • Singh J, Behal A, Singla N, Joshi A, Birbian N, et al. 2009. Metagenomics: Concept, methodology, ecological inference and recent advances. Biotechnol. J. 4:480-94
    • (2009) Biotechnol. J , vol.4 , pp. 480-494
    • Singh, J.1    Behal, A.2    Singla, N.3    Joshi, A.4    Birbian, N.5
  • 111
    • 20444419322 scopus 로고    scopus 로고
    • Metagenomics: Advances in ecology and biotechnology
    • DOI 10.1016/j.femsle.2005.05.011, PII S0378109705002934
    • Steele HL, Streit WR. 2005. Metagenomics: Advances in ecology and biotechnology. FEMS Microbiol. Lett. 247:105-11 (Pubitemid 40803484)
    • (2005) FEMS Microbiology Letters , vol.247 , Issue.2 , pp. 105-111
    • Steele, H.L.1    Streit, W.R.2
  • 112
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
    • Stein JL, Marsh TL, Wu KY, Shizuya H, Delong EF. 1996. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kb-pair genome fragment from a planktonic marine archaeon. J. Bacteriol. 178:591-99 (Pubitemid 26036628)
    • (1996) Journal of Bacteriology , vol.178 , Issue.3 , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    Delong, E.F.5
  • 113
    • 33748649282 scopus 로고    scopus 로고
    • Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial community
    • DOI 10.1128/JB.01950-05
    • Stokes HW, Nesbo CL, HolleyM, BahlMI, Gillings MR, et al. 2006. Class 1 integrons potentially predating the association with Tn402-like transposition genes are present in a sediment microbial community. J. Bacteriol. 188:5722-30 (Pubitemid 44384080)
    • (2006) Journal of Bacteriology , vol.188 , Issue.16 , pp. 5722-5730
    • Stokes, H.W.1    Nesbo, C.L.2    Holley, M.3    Bahl, M.I.4    Gillings, M.R.5    Boucher, Y.6
  • 114
    • 0035208354 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
    • DOI 10.1046/j.1462-2920.2001.00198.x
    • Suzuki MT, Beja O, Taylor LT, Delong EF. 2001. Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ. Microbiol. 3:323-31 (Pubitemid 33141489)
    • (2001) Environmental Microbiology , vol.3 , Issue.5 , pp. 323-331
    • Suzuki, M.T.1    Beja, O.2    Taylor, L.T.3    DeLong, E.F.4
  • 115
    • 67949095970 scopus 로고    scopus 로고
    • Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing
    • Temperton B, Field D, Oliver A, Tiwari B, Joint I, et al. 2009. Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME J. 3:792-96
    • (2009) ISME J. , vol.3 , pp. 792-796
    • Temperton, B.1    Field, D.2    Oliver, A.3    Tiwari, B.4    Joint, I.5
  • 117
    • 66649103701 scopus 로고    scopus 로고
    • The dddP gene, encoding a novel enzyme that converts dimethylsulfoniopropionate into dimethylsulfide, is widespread in oceanmetagenomes and marine bacteria and also occurs in some Ascomycete fungi
    • Todd JD, Curson ARJ, Dupont CL, Nicholson P, Johnston AWB. 2009. The dddP gene, encoding a novel enzyme that converts dimethylsulfoniopropionate into dimethylsulfide, is widespread in oceanmetagenomes and marine bacteria and also occurs in some Ascomycete fungi. Environ. Microbiol. 11:1376-85
    • (2009) Environ. Microbiol. , vol.11 , pp. 1376-1385
    • Todd, J.D.1    Arj, C.2    Dupont, C.L.3    Nicholson, P.4    Awb, J.5
  • 118
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • DOI 10.1111/j.1462-2920.2005.00906.x
    • Treusch AH, Leininger S, Kietzin A, Schuster SC, Klenk H-P, et al. 2005. Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7:1985-95 (Pubitemid 41752386)
    • (2005) Environmental Microbiology , vol.7 , Issue.12 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kietzin, A.3    Schuster, S.C.4    Klenk, H.-P.5    Schleper, C.6
  • 120
    • 77950863797 scopus 로고    scopus 로고
    • Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium
    • Tripp HJ, Bench SR, Turk KA, Foster RA, Desany BA, et al. 2010. Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium. Nature 464:90-94
    • (2010) Nature , vol.464 , pp. 90-94
    • Tripp, H.J.1    Bench, S.R.2    Turk, K.A.3    Foster, R.A.4    Desany, B.A.5
  • 121
    • 61549141727 scopus 로고    scopus 로고
    • The Florida red tide dinoflagellate Karenia brevis: New insights into cellular andmolecular processes underlying bloom dynamics
    • Van Dolah FM, Lidie KB, Monroe EA, Bhattacharya D, Campbell L, et al. 2009. The Florida red tide dinoflagellate Karenia brevis: New insights into cellular andmolecular processes underlying bloom dynamics. Harmful Algae 8:562-72
    • (2009) Harmful Algae , vol.8 , pp. 562-572
    • Van Dolah, F.M.1    Lidie, K.B.2    Monroe, E.A.3    Bhattacharya, D.4    Campbell, L.5
  • 123
    • 0031927992 scopus 로고    scopus 로고
    • Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
    • Vergin KL, Urbach E, Stein JL, Delong EK, Lanoil BD, et al. 1998. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl. Environ. Microbiol. 64:3075-78 (Pubitemid 28363188)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.8 , pp. 3075-3078
    • Vergin, K.L.1    Urbach, E.2    Stein, J.L.3    DeLong, E.F.4    Lanoil, B.D.5    Giovannoni, S.J.6
  • 124
    • 70350502063 scopus 로고    scopus 로고
    • Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
    • Walsh DA, Zalkova E,Howes CG, Song YC, Wright JJ, et al. 2009. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578-82
    • (2009) Science , vol.326 , pp. 578-582
    • Walsh, D.A.1    Zalkova, E.2    Howes, C.G.3    Song, Y.C.4    Wright, J.J.5
  • 125
    • 33644949518 scopus 로고    scopus 로고
    • New directions and interactions in metagenomics research
    • Ward N. 2006. New directions and interactions in metagenomics research. FEMS Microbiol. Ecol. 55:331-38
    • (2006) FEMS Microbiol. Ecol. , vol.55 , pp. 331-338
    • Ward, N.1
  • 126
    • 40449108823 scopus 로고    scopus 로고
    • Building on basic metagenomics with complementary technologies
    • Warnecke F, Hugenholtz P. 2007. Building on basic metagenomics with complementary technologies. Genome Biol. 8:231
    • (2007) Genome Biol. , vol.8 , pp. 231
    • Warnecke, F.1    Hugenholtz, P.2
  • 127
    • 38849200974 scopus 로고    scopus 로고
    • Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
    • Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ. 2007. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol. Direct 2:27
    • (2007) Biol. Direct , vol.2 , pp. 27
    • Wilhelm, L.J.1    Tripp, H.J.2    Givan, S.A.3    Smith, D.P.4    Giovannoni, S.J.5
  • 128
    • 70350545933 scopus 로고    scopus 로고
    • Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
    • Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, et al. 2009. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS ONE 4:e7370
    • (2009) PLoS ONE , vol.4
    • Willner, D.1    Furlan, M.2    Haynes, M.3    Schmieder, R.4    Angly, F.E.5
  • 129
    • 67649911268 scopus 로고    scopus 로고
    • Metagenomic signatures of 86 microbial and viral metagenomes
    • Willner D, Thurber RV, Rohwer F. 2009. Metagenomic signatures of 86 microbial and viral metagenomes. Environ. Microbiol. 11:1752-66
    • (2009) Environ. Microbiol. , vol.11 , pp. 1752-1766
    • Willner, D.1    Thurber, R.V.2    Rohwer, F.3
  • 130
    • 34548509019 scopus 로고    scopus 로고
    • Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes
    • DOI 10.1038/ismej.2007.63, PII ISMEJ200763
    • Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, et al. 2007. Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with Planctomycete genomes. ISME J. 1:419-35 (Pubitemid 47373248)
    • (2007) ISME Journal , vol.1 , Issue.5 , pp. 419-435
    • Woebken, D.1    Teeling, H.2    Wecker, P.3    Dumitriu, A.4    Kostadinov, I.5    Delong, E.F.6    Amann, R.7    Glockner, F.O.8
  • 134
    • 72949101201 scopus 로고    scopus 로고
    • A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
    • WuD, Hudenholtz P,Mavromatis K, Pukall R, Dalin E, et al. 2009. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462:1056-60
    • (2009) Nature , vol.462 , pp. 1056-1060
    • Wu, D.1    Hudenholtz, P.2    Mavromatis, K.3    Pukall, R.4    Dalin, E.5
  • 135
    • 33646547584 scopus 로고    scopus 로고
    • Microbial ecology in the age of genomics and metagenomics: Concepts, tools, and recent advances
    • DOI 10.1111/j.1365-294X.2006.02882.x
    • Xu J. 2006. Microbial ecology in the age of genomics and metagenomics: Concepts, tools, and recent advances. Mol. Ecol. 15:1713-31 (Pubitemid 43725660)
    • (2006) Molecular Ecology , vol.15 , Issue.7 , pp. 1713-1731
    • Xu, J.1
  • 136
    • 33947235074 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families
    • Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, et al. 2007. The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families. PLoS Biol. 5:432-66
    • (2007) PLoS Biol. , vol.5 , pp. 432-466
    • Yooseph, S.1    Sutton, G.2    Rusch, D.B.3    Halpern, A.L.4    Williamson, S.J.5
  • 137
    • 28644449137 scopus 로고    scopus 로고
    • Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: Insights from metagenomics and environmental genomics
    • DOI 10.1111/j.1462-2920.2005.00843.x
    • Yutin N, Béjà O. 2005. Putative novel photosynthetic reaction center organizations in marine aerobic anoxygenic photosynthetic bacteria: Insights from metagenomics and environmental genomics. Environ. Microbiol. 7:2027-33 (Pubitemid 41752389)
    • (2005) Environmental Microbiology , vol.7 , Issue.12 , pp. 2027-2033
    • Yutin, N.1    Beja, O.2
  • 138
    • 34248573531 scopus 로고    scopus 로고
    • Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes
    • DOI 10.1111/j.1462-2920.2007.01265.x
    • Yutin N, Suzuki MT, Teeling H,Weber M, Venter JC, et al. 2007. Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific oceans using the global ocean sampling expedition metagenomes. Environ. Microbiol. 9:1464-75 (Pubitemid 46763527)
    • (2007) Environmental Microbiology , vol.9 , Issue.6 , pp. 1464-1475
    • Yutin, N.1    Suzuki, M.T.2    Teeling, H.3    Weber, M.4    Venter, J.C.5    Rusch, D.B.6    Beja, O.7
  • 139
    • 51649123143 scopus 로고    scopus 로고
    • High bacterivory by the smallest phytoplankton in the North Atlantic Ocean
    • Zubkov MV, Tarran GA. 2008. High bacterivory by the smallest phytoplankton in the North Atlantic Ocean. Nature 455:224-26
    • (2008) Nature , vol.455 , pp. 224-226
    • Zubkov, M.V.1    Tarran, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.