-
1
-
-
49249146999
-
Teaching one-carbon metabolism
-
Henderson JF, (1979) Teaching one-carbon metabolism. Biochem Educ 7: 51-52.
-
(1979)
Biochem Educ
, vol.7
, pp. 51-52
-
-
Henderson, J.F.1
-
3
-
-
0032479058
-
C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea
-
Chistoserdova L, Vorholt JA, Thauer RK, Lidstrom ME, (1998) C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea. Science 281: 99-102.
-
(1998)
Science
, vol.281
, pp. 99-102
-
-
Chistoserdova, L.1
Vorholt, J.A.2
Thauer, R.K.3
Lidstrom, M.E.4
-
4
-
-
0037967152
-
Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view
-
Chistoserdova L, Chen SW, Lapidus A, Lidstrom ME, (2003) Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view. J Bacteriol 185: 2980-2987.
-
(2003)
J Bacteriol
, vol.185
, pp. 2980-2987
-
-
Chistoserdova, L.1
Chen, S.W.2
Lapidus, A.3
Lidstrom, M.E.4
-
6
-
-
43849087058
-
The small genome of an abundant coastal ocean methylotroph
-
Giovannoni SJ, Hayakawa DH, Tripp HJ, Stingl U, Givan SA, et al. (2008) The small genome of an abundant coastal ocean methylotroph. Environ Microbiol 10: 1771-1782.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1771-1782
-
-
Giovannoni, S.J.1
Hayakawa, D.H.2
Tripp, H.J.3
Stingl, U.4
Givan, S.A.5
-
7
-
-
0036042189
-
Cofactor-dependent pathways of formaldehyde oxidation in methylotrophic bacteria
-
Vorholt JA, (2002) Cofactor-dependent pathways of formaldehyde oxidation in methylotrophic bacteria. Arch Microbiol 178: 239-249.
-
(2002)
Arch Microbiol
, vol.178
, pp. 239-249
-
-
Vorholt, J.A.1
-
8
-
-
0018897049
-
Utilization of methylamines as nitrogen sources by non-methylotrophs
-
Bicknell B, Owens JD, (1980) Utilization of methylamines as nitrogen sources by non-methylotrophs. J Gen Microbiol 117: 89-96.
-
(1980)
J Gen Microbiol
, vol.117
, pp. 89-96
-
-
Bicknell, B.1
Owens, J.D.2
-
9
-
-
0026706105
-
Metabolism of dimethylsulfoniopropionate and glycine betaine by a marine bacterium
-
Diaz MR, Visscher PT, Taylor BF, (1992) Metabolism of dimethylsulfoniopropionate and glycine betaine by a marine bacterium. FEMS Microbiol Lett 96: 61-66.
-
(1992)
FEMS Microbiol Lett
, vol.96
, pp. 61-66
-
-
Diaz, M.R.1
Visscher, P.T.2
Taylor, B.F.3
-
10
-
-
0021778428
-
Bacterial reduction of trimethylamine oxide
-
Barrett EL, Kwan HS, (1985) Bacterial reduction of trimethylamine oxide. Annu Rev of Microbiol 39: 131-149.
-
(1985)
Annu Rev of Microbiol
, vol.39
, pp. 131-149
-
-
Barrett, E.L.1
Kwan, H.S.2
-
11
-
-
0033828996
-
Physiological aspects of the production and conversion of DMSP in marine algae and higher plants
-
Stefels J, (2000) Physiological aspects of the production and conversion of DMSP in marine algae and higher plants. J Sea Res 43: 183-197.
-
(2000)
J Sea Res
, vol.43
, pp. 183-197
-
-
Stefels, J.1
-
12
-
-
0038372602
-
Atmospheric methanol budget and ocean implication
-
Heikes BG, Chang W, Pilson MEQ, Swift E, Singh HB, et al. (2002) Atmospheric methanol budget and ocean implication. Global Biogeochem Cycles 16: 1133.
-
(2002)
Global Biogeochem Cycles
, vol.16
, pp. 1133
-
-
Heikes, B.G.1
Chang, W.2
Pilson, M.E.Q.3
Swift, E.4
Singh, H.B.5
-
13
-
-
0344961758
-
Oxygenated volatile organic chemicals in the oceans: Inferences and implications based on atmospheric observations and air-sea exchange models
-
Singh HB, Tabazadeh A, Evans MJ, Field BD, Jacob DJ, et al. (2003) Oxygenated volatile organic chemicals in the oceans: Inferences and implications based on atmospheric observations and air-sea exchange models. Geophys Res Lett 30: 1862.
-
(2003)
Geophys Res Lett
, vol.30
, pp. 1862
-
-
Singh, H.B.1
Tabazadeh, A.2
Evans, M.J.3
Field, B.D.4
Jacob, D.J.5
-
14
-
-
79953023605
-
Microbial methanol uptake in northeast Atlantic waters
-
Dixon JL, Beale R, Nightingale PD, (2010) Microbial methanol uptake in northeast Atlantic waters. ISME J 5: 704-716.
-
(2010)
ISME J
, vol.5
, pp. 704-716
-
-
Dixon, J.L.1
Beale, R.2
Nightingale, P.D.3
-
15
-
-
84944838916
-
Estimates on the production of CO and H2 from the oxidation of hydrocarbon emissions from vegetation
-
Zimmerman PR, Chatfield RB, Fishman J, Crutzen PJ, Hanst PL, (1978) Estimates on the production of CO and H2 from the oxidation of hydrocarbon emissions from vegetation. Geophys Res Lett 5: 679-682.
-
(1978)
Geophys Res Lett
, vol.5
, pp. 679-682
-
-
Zimmerman, P.R.1
Chatfield, R.B.2
Fishman, J.3
Crutzen, P.J.4
Hanst, P.L.5
-
16
-
-
0033761577
-
Measurements of excess O3, CO2, CO, CH4, C2H4, C2H2, HCN, NO, NH3, HCOOH, CH3COOH, HCHO, and CH3OH in 1997 Alaskan biomass burning plumes by airborne Fourier transform infrared spectroscopy (AFTIR)
-
Goode JG, Yokelson RJ, Ward DE, Susott RA, Babbitt RE, et al. (2000) Measurements of excess O3, CO2, CO, CH4, C2H4, C2H2, HCN, NO, NH3, HCOOH, CH3COOH, HCHO, and CH3OH in 1997 Alaskan biomass burning plumes by airborne Fourier transform infrared spectroscopy (AFTIR). J Geophys Res 105: 22147-22166.
-
(2000)
J Geophys Res
, vol.105
, pp. 22147-22166
-
-
Goode, J.G.1
Yokelson, R.J.2
Ward, D.E.3
Susott, R.A.4
Babbitt, R.E.5
-
17
-
-
0002127848
-
Photochemical degradation of dissolved organic carbon and its impact on the oceanic carbon cycle
-
Mopper K, Zhou X, Kieber RJ, Kieber DJ, Sikorski RJ, et al. (1991) Photochemical degradation of dissolved organic carbon and its impact on the oceanic carbon cycle. Nature 353: 60-62.
-
(1991)
Nature
, vol.353
, pp. 60-62
-
-
Mopper, K.1
Zhou, X.2
Kieber, R.J.3
Kieber, D.J.4
Sikorski, R.J.5
-
18
-
-
0018083858
-
Detoxification reactions in isolated hepatocytes. Role of glutathione peroxidase, catalase, and formaldehyde dehydrogenase in reactions relating to N-demethylation by the cytochrome P-450 system
-
Jones DP, Thor H, Andersson B, Orrenius S, (1978) Detoxification reactions in isolated hepatocytes. Role of glutathione peroxidase, catalase, and formaldehyde dehydrogenase in reactions relating to N-demethylation by the cytochrome P-450 system. J Biol Chem 253: 6031-6037.
-
(1978)
J Biol Chem
, vol.253
, pp. 6031-6037
-
-
Jones, D.P.1
Thor, H.2
Andersson, B.3
Orrenius, S.4
-
19
-
-
0032834938
-
Distribution of tetrahydromethanopterin-dependent enzymes in methylotrophic bacteria and phylogeny of methenyl tetrahydromethanopterin cyclohydrolases
-
Vorholt JA, Chistoserdova L, Stolyar SM, Thauer RK, Lidstrom ME, (1999) Distribution of tetrahydromethanopterin-dependent enzymes in methylotrophic bacteria and phylogeny of methenyl tetrahydromethanopterin cyclohydrolases. J Bacteriol 181: 5750-5757.
-
(1999)
J Bacteriol
, vol.181
, pp. 5750-5757
-
-
Vorholt, J.A.1
Chistoserdova, L.2
Stolyar, S.M.3
Thauer, R.K.4
Lidstrom, M.E.5
-
20
-
-
0036280066
-
Chloromethane-induced genes define a third C1 utilization pathway in Methylobacterium chloromethanicum CM4
-
Studer A, McAnulla C, Buchele R, Leisinger T, Vuilleumier S, (2002) Chloromethane-induced genes define a third C1 utilization pathway in Methylobacterium chloromethanicum CM4. J Bacteriol 184: 3476-3484.
-
(2002)
J Bacteriol
, vol.184
, pp. 3476-3484
-
-
Studer, A.1
McAnulla, C.2
Buchele, R.3
Leisinger, T.4
Vuilleumier, S.5
-
21
-
-
38849088680
-
Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides
-
Wilson SM, Gleisten MP, Donohue TJ, (2008) Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides. Microbiology 154: 296-305.
-
(2008)
Microbiology
, vol.154
, pp. 296-305
-
-
Wilson, S.M.1
Gleisten, M.P.2
Donohue, T.J.3
-
22
-
-
0034832015
-
Organization of the genes involved in dimethylglycine and sarcosine degradation in Arthrobacter spp.: implications for glycine betaine catabolism
-
Meskys R, Harris RJ, Casaite V, Basran J, Scrutton NS, (2001) Organization of the genes involved in dimethylglycine and sarcosine degradation in Arthrobacter spp.: implications for glycine betaine catabolism. Eur J Biochem 268: 3390-3398.
-
(2001)
Eur J Biochem
, vol.268
, pp. 3390-3398
-
-
Meskys, R.1
Harris, R.J.2
Casaite, V.3
Basran, J.4
Scrutton, N.S.5
-
23
-
-
0020630539
-
Formaldehyde damage to DNA and inhibition of DNA repair in human bronchial cells
-
Grafstrom RC, Fornace AJ Jr, Autrup H, Lechner JF, Harris CC, (1983) Formaldehyde damage to DNA and inhibition of DNA repair in human bronchial cells. Science 220: 216-218.
-
(1983)
Science
, vol.220
, pp. 216-218
-
-
Grafstrom, R.C.1
Fornace Jr., A.J.2
Autrup, H.3
Lechner, J.F.4
Harris, C.C.5
-
24
-
-
0023152601
-
Formaldehyde mutagenesis and formation of DNA-protein crosslinks in human lymphoblasts in vitro
-
Craft TR, Bermudez E, Skopek TR, (1987) Formaldehyde mutagenesis and formation of DNA-protein crosslinks in human lymphoblasts in vitro. Mutat Res 176: 147-155.
-
(1987)
Mutat Res
, vol.176
, pp. 147-155
-
-
Craft, T.R.1
Bermudez, E.2
Skopek, T.R.3
-
25
-
-
0037180794
-
SAR11 clade dominates ocean surface bacterioplankton communities
-
Morris RM, Rappe MS, Connon SA, Vergin KL, Siebold WA, et al. (2002) SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420: 806-810.
-
(2002)
Nature
, vol.420
, pp. 806-810
-
-
Morris, R.M.1
Rappe, M.S.2
Connon, S.A.3
Vergin, K.L.4
Siebold, W.A.5
-
27
-
-
0025366454
-
Genetic diversity in Sargasso Sea bacterioplankton
-
Giovannoni SJ, Britschgi TB, Moyer CL, Field KG, (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345: 60-63.
-
(1990)
Nature
, vol.345
, pp. 60-63
-
-
Giovannoni, S.J.1
Britschgi, T.B.2
Moyer, C.L.3
Field, K.G.4
-
28
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, et al. (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309: 1242-1245.
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
-
29
-
-
60749109199
-
Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
-
Carlson CA, Morris R, Parsons R, Treusch AH, Giovannoni SJ, et al. (2009) Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J 3: 283-295.
-
(2009)
ISME J
, vol.3
, pp. 283-295
-
-
Carlson, C.A.1
Morris, R.2
Parsons, R.3
Treusch, A.H.4
Giovannoni, S.J.5
-
30
-
-
0346361864
-
Multiple formate dehydrogenase enzymes in the facultative methylotroph Methylobacterium extorquens AM1 are dispensable for growth on methanol
-
Chistoserdova L, Laukel M, Portais JC, Vorholt JA, Lidstrom ME, (2004) Multiple formate dehydrogenase enzymes in the facultative methylotroph Methylobacterium extorquens AM1 are dispensable for growth on methanol. J Bacteriol 186: 22-28.
-
(2004)
J Bacteriol
, vol.186
, pp. 22-28
-
-
Chistoserdova, L.1
Laukel, M.2
Portais, J.C.3
Vorholt, J.A.4
Lidstrom, M.E.5
-
31
-
-
37449013879
-
Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy
-
Chistoserdova L, Crowther GJ, Vorholt JA, Skovran E, Portais JC, et al. (2007) Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy. J Bacteriol 189: 9076-9081.
-
(2007)
J Bacteriol
, vol.189
, pp. 9076-9081
-
-
Chistoserdova, L.1
Crowther, G.J.2
Vorholt, J.A.3
Skovran, E.4
Portais, J.C.5
-
32
-
-
0037478594
-
Biochemical and structural analysis of the molybdenum cofactor biosynthesis protein MobA
-
Guse A, Stevenson CE, Kuper J, Buchanan G, Schwarz G, et al. (2003) Biochemical and structural analysis of the molybdenum cofactor biosynthesis protein MobA. J Biol Chem 278: 25302-25307.
-
(2003)
J Biol Chem
, vol.278
, pp. 25302-25307
-
-
Guse, A.1
Stevenson, C.E.2
Kuper, J.3
Buchanan, G.4
Schwarz, G.5
-
33
-
-
0037209663
-
MoeA, an enzyme in the molybdopterin synthesis pathway, is required for rifamycin SV production in Amycolatopsis mediterranei U32
-
Wang W, Zhang W, Lu J, Yang Y, Chiao J, et al. (2002) MoeA, an enzyme in the molybdopterin synthesis pathway, is required for rifamycin SV production in Amycolatopsis mediterranei U32. Appl Microbiol Biotechnol 60: 139-146.
-
(2002)
Appl Microbiol Biotechnol
, vol.60
, pp. 139-146
-
-
Wang, W.1
Zhang, W.2
Lu, J.3
Yang, Y.4
Chiao, J.5
-
34
-
-
0031891276
-
Physiological and genetic analyses leading to identification of a biochemical role for the moeA (molybdate metabolism) gene product in Escherichia coli
-
Hasona A, Ray RM, Shanmugam KT, (1998) Physiological and genetic analyses leading to identification of a biochemical role for the moeA (molybdate metabolism) gene product in Escherichia coli. J Bacteriol 180: 1466-1472.
-
(1998)
J Bacteriol
, vol.180
, pp. 1466-1472
-
-
Hasona, A.1
Ray, R.M.2
Shanmugam, K.T.3
-
35
-
-
84860120228
-
Hal: an automated pipeline for phylogenetic analyses of genomic data
-
doi:10.1371/currents
-
Robbertse B, Yoder RJ, Boyd A, Reeves J, Spatafora JW, (2011) Hal: an automated pipeline for phylogenetic analyses of genomic data. PLoS Curr 3: RRN1213 doi:10.1371/currents.
-
(2011)
PLoS Curr 3: RRN1213
-
-
Robbertse, B.1
Yoder, R.J.2
Boyd, A.3
Reeves, J.4
Spatafora, J.W.5
-
36
-
-
77953623738
-
Monomethylamine as a nitrogen source for a nonmethylotrophic bacterium, Agrobacterium tumefaciens
-
Chen Y, McAleer KL, Murrell JC, (2010) Monomethylamine as a nitrogen source for a nonmethylotrophic bacterium, Agrobacterium tumefaciens. Appl Environ Microbiol 76: 4102-4104.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4102-4104
-
-
Chen, Y.1
McAleer, K.L.2
Murrell, J.C.3
-
37
-
-
0021223098
-
Nitrogen fixation and carbon dioxide assimilation in Rhizobium japonicum
-
Manian SS, Gumbleton R, Buckley AM, O'Gara F, (1984) Nitrogen fixation and carbon dioxide assimilation in Rhizobium japonicum. Appl Environ Microbiol 48: 276-279.
-
(1984)
Appl Environ Microbiol
, vol.48
, pp. 276-279
-
-
Manian, S.S.1
Gumbleton, R.2
Buckley, A.M.3
O'Gara, F.4
-
38
-
-
0021222781
-
Diverse effects of formate on the assimilatory metabolism of nitrate and nitrite in Rhizobium
-
Singh RK, Singh RM, (1983) Diverse effects of formate on the assimilatory metabolism of nitrate and nitrite in Rhizobium. J Biosciences 6: 181-184.
-
(1983)
J Biosciences
, vol.6
, pp. 181-184
-
-
Singh, R.K.1
Singh, R.M.2
-
39
-
-
0026730941
-
Cloning, expression, and sequence analysis of the Bacillus methanolicus C1 methanol dehydrogenase gene
-
de Vries GE, Arfman N, Terpstra P, Dijkhuizen L, (1992) Cloning, expression, and sequence analysis of the Bacillus methanolicus C1 methanol dehydrogenase gene. J Bacteriol 174: 5346-5353.
-
(1992)
J Bacteriol
, vol.174
, pp. 5346-5353
-
-
de Vries, G.E.1
Arfman, N.2
Terpstra, P.3
Dijkhuizen, L.4
-
40
-
-
67650747577
-
Two novel metal-independent long-chain alkyl alcohol dehydrogenases from Geobacillus thermodenitrificans NG80-2
-
Liu X, Dong Y, Zhang J, Zhang A, Wang L, et al. (2009) Two novel metal-independent long-chain alkyl alcohol dehydrogenases from Geobacillus thermodenitrificans NG80-2. Microbiology 155: 2078-2085.
-
(2009)
Microbiology
, vol.155
, pp. 2078-2085
-
-
Liu, X.1
Dong, Y.2
Zhang, J.3
Zhang, A.4
Wang, L.5
-
41
-
-
0033568692
-
Cloning and over-expression in Escherichia coli of the gene encoding NADPH group III alcohol dehydrogenase from Thermococcus hydrothermalis. Characterization and comparison of the native and the recombinant enzymes
-
Antoine E, Rolland JL, Raffin JP, Dietrich J, (1999) Cloning and over-expression in Escherichia coli of the gene encoding NADPH group III alcohol dehydrogenase from Thermococcus hydrothermalis. Characterization and comparison of the native and the recombinant enzymes. Eur J Biochem 264: 880-889.
-
(1999)
Eur J Biochem
, vol.264
, pp. 880-889
-
-
Antoine, E.1
Rolland, J.L.2
Raffin, J.P.3
Dietrich, J.4
-
42
-
-
0010331408
-
The methanol-oxidizing enzyme systems in Gram-positive methylotrophic bacteria
-
In: Murrell, JC, Kelly, DP, editors, Andover, UK, Intercept Ltd
-
Bystrykh LV, Arfman N, Dijkhuizen L, (1993) The methanol-oxidizing enzyme systems in Gram-positive methylotrophic bacteria. In: Murrell, JC, Kelly, DP, editors. Andover, UK Intercept Ltd. pp. 245-251 Microbial growth on C1 compounds.
-
(1993)
Microbial growth on C1 compounds
, pp. 245-251
-
-
Bystrykh, L.V.1
Arfman, N.2
Dijkhuizen, L.3
-
43
-
-
0031051015
-
Properties of an NAD(H)-containing methanol dehydrogenase and its activator protein from Bacillus methanolicus
-
Arfman N, Hektor HJ, Bystrykh LV, Govorukhina NI, Dijkhuizen L, et al. (1997) Properties of an NAD(H)-containing methanol dehydrogenase and its activator protein from Bacillus methanolicus. Eur J Biochem 244: 426-433.
-
(1997)
Eur J Biochem
, vol.244
, pp. 426-433
-
-
Arfman, N.1
Hektor, H.J.2
Bystrykh, L.V.3
Govorukhina, N.I.4
Dijkhuizen, L.5
-
44
-
-
80051996422
-
Petroleum microbiology: concepts environmental implications industrial applications
-
Vandecasteele J-P, (2008) Petroleum microbiology: concepts environmental implications industrial applications. Paris Editions Technip.
-
(2008)
Paris Editions Technip
-
-
Vandecasteele, J.-P.1
-
45
-
-
0036062321
-
Glycine betaine transmethylase mutant of Pseudomonas aeruginosa
-
Serra AL, Mariscotti JF, Barra JL, Lucchesi GI, Domenech CE, et al. (2002) Glycine betaine transmethylase mutant of Pseudomonas aeruginosa. J Bacteriol 184: 4301-4303.
-
(2002)
J Bacteriol
, vol.184
, pp. 4301-4303
-
-
Serra, A.L.1
Mariscotti, J.F.2
Barra, J.L.3
Lucchesi, G.I.4
Domenech, C.E.5
-
46
-
-
33749644161
-
Interrelations between glycine betaine catabolism and methionine biosynthesis in Sinorhizobium meliloti strain 102F34
-
Barra L, Fontenelle C, Ermel G, Trautwetter A, Walker GC, et al. (2006) Interrelations between glycine betaine catabolism and methionine biosynthesis in Sinorhizobium meliloti strain 102F34. J Bacteriol 188: 7195-7204.
-
(2006)
J Bacteriol
, vol.188
, pp. 7195-7204
-
-
Barra, L.1
Fontenelle, C.2
Ermel, G.3
Trautwetter, A.4
Walker, G.C.5
-
47
-
-
0031886571
-
Uptake of choline and its conversion to glycine betaine by bacteria in estuarine waters
-
Kiene RP, (1998) Uptake of choline and its conversion to glycine betaine by bacteria in estuarine waters. Appl Environ Microbiol 64: 1045-1051.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 1045-1051
-
-
Kiene, R.P.1
-
48
-
-
74349122331
-
Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5
-
Latypova E, Yang S, Wang YS, Wang T, Chavkin TA, et al. (2010) Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5. Mol Microbiol 75: 426-439.
-
(2010)
Mol Microbiol
, vol.75
, pp. 426-439
-
-
Latypova, E.1
Yang, S.2
Wang, Y.S.3
Wang, T.4
Chavkin, T.A.5
-
49
-
-
0029143934
-
Sequence analysis of sarcosine oxidase and nearby genes reveals homologies with key enzymes of folate one-carbon metabolism
-
Chlumsky LJ, Zhang L, Jorns MS, (1995) Sequence analysis of sarcosine oxidase and nearby genes reveals homologies with key enzymes of folate one-carbon metabolism. J Biol Chem 270: 18252-18259.
-
(1995)
J Biol Chem
, vol.270
, pp. 18252-18259
-
-
Chlumsky, L.J.1
Zhang, L.2
Jorns, M.S.3
-
50
-
-
38049148752
-
The role of the mitochondrial glycine cleavage complex in the metabolism and virulence of the protozoan parasite Leishmania major
-
Scott DA, Hickerson SM, Vickers TJ, Beverley SM, (2008) The role of the mitochondrial glycine cleavage complex in the metabolism and virulence of the protozoan parasite Leishmania major. J Biol Chem 283: 155-165.
-
(2008)
J Biol Chem
, vol.283
, pp. 155-165
-
-
Scott, D.A.1
Hickerson, S.M.2
Vickers, T.J.3
Beverley, S.M.4
-
51
-
-
77955983706
-
The prokaryotes: Symbiotic associations, biotechnology, applied microbiology
-
Springer
-
Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E, (2006) The prokaryotes: Symbiotic associations, biotechnology, applied microbiology. Springer.
-
(2006)
-
-
Dworkin, M.1
Falkow, S.2
Rosenberg, E.3
Schleifer, K.-H.4
Stackebrandt, E.5
-
52
-
-
33750457352
-
Bacterial taxa that limit sulfur flux from the ocean
-
Howard EC, Henriksen JR, Buchan A, Reisch CR, Burgmann H, et al. (2006) Bacterial taxa that limit sulfur flux from the ocean. Science 314: 649-652.
-
(2006)
Science
, vol.314
, pp. 649-652
-
-
Howard, E.C.1
Henriksen, J.R.2
Buchan, A.3
Reisch, C.R.4
Burgmann, H.5
-
53
-
-
57349102353
-
Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi
-
Reisch CR, Moran MA, Whitman WB, (2008) Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi. J Bacteriol 190: 8018-8024.
-
(2008)
J Bacteriol
, vol.190
, pp. 8018-8024
-
-
Reisch, C.R.1
Moran, M.A.2
Whitman, W.B.3
-
54
-
-
6044267984
-
Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism
-
Teplyakov A, Obmolova G, Sarikaya E, Pullalarevu S, Krajewski W, et al. (2004) Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism. J Bacteriol 186: 7134-7140.
-
(2004)
J Bacteriol
, vol.186
, pp. 7134-7140
-
-
Teplyakov, A.1
Obmolova, G.2
Sarikaya, E.3
Pullalarevu, S.4
Krajewski, W.5
-
55
-
-
23844470921
-
Crystal structure of DMGO provides a prototype for a new tetrahydrofolate-binding fold
-
Scrutton NS, Leys D, (2005) Crystal structure of DMGO provides a prototype for a new tetrahydrofolate-binding fold. Biochem Soc Trans 33: 776-779.
-
(2005)
Biochem Soc Trans
, vol.33
, pp. 776-779
-
-
Scrutton, N.S.1
Leys, D.2
-
56
-
-
78049488541
-
A role of ygfZ in the Escherichia coli response to plumbagin challenge
-
Lin CN, Syu WJ, Sun WS, Chen JW, Chen TH, et al. (2010) A role of ygfZ in the Escherichia coli response to plumbagin challenge. J Biomed Sci 17: 84.
-
(2010)
J Biomed Sci
, vol.17
, pp. 84
-
-
Lin, C.N.1
Syu, W.J.2
Sun, W.S.3
Chen, J.W.4
Chen, T.H.5
-
57
-
-
0036479312
-
A glutathione-dependent formaldehyde-activating enzyme (Gfa) from Paracoccus denitrificans detected and purified via two-dimensional proton exchange NMR spectroscopy
-
Goenrich M, Bartoschek S, Hagemeier CH, Griesinger C, Vorholt JA, (2002) A glutathione-dependent formaldehyde-activating enzyme (Gfa) from Paracoccus denitrificans detected and purified via two-dimensional proton exchange NMR spectroscopy. J Biol Chem 277: 3069-3072.
-
(2002)
J Biol Chem
, vol.277
, pp. 3069-3072
-
-
Goenrich, M.1
Bartoschek, S.2
Hagemeier, C.H.3
Griesinger, C.4
Vorholt, J.A.5
-
58
-
-
0028872476
-
Isolation, sequencing, and mutagenesis of the gene encoding NAD- and glutathione-dependent formaldehyde dehydrogenase (GD-FALDH) from Paracoccus denitrificans, in which GD-FALDH is essential for methylotrophic growth
-
Ras J, Van Ophem PW, Reijnders WN, Van Spanning RJ, Duine JA, et al. (1995) Isolation, sequencing, and mutagenesis of the gene encoding NAD- and glutathione-dependent formaldehyde dehydrogenase (GD-FALDH) from Paracoccus denitrificans, in which GD-FALDH is essential for methylotrophic growth. J Bacteriol 177: 247-251.
-
(1995)
J Bacteriol
, vol.177
, pp. 247-251
-
-
Ras, J.1
van Ophem, P.W.2
Reijnders, W.N.3
van Spanning, R.J.4
Duine, J.A.5
-
59
-
-
0029967019
-
S-formylglutathione hydrolase of Paracoccus denitrificans is homologous to human esterase D: a universal pathway for formaldehyde detoxification?
-
Harms N, Ras J, Reijnders WN, van Spanning RJ, Stouthamer AH, (1996) S-formylglutathione hydrolase of Paracoccus denitrificans is homologous to human esterase D: a universal pathway for formaldehyde detoxification? J Bacteriol 178: 6296-6299.
-
(1996)
J Bacteriol
, vol.178
, pp. 6296-6299
-
-
Harms, N.1
Ras, J.2
Reijnders, W.N.3
van Spanning, R.J.4
Stouthamer, A.H.5
-
60
-
-
50149109783
-
Aerobic production of methane in the sea
-
Karl DM, Beversdorf L, Bjorkman KM, Church MJ, Martinez A, et al. (2008) Aerobic production of methane in the sea. Nature Geosci 1: 473-478.
-
(2008)
Nature Geosci
, vol.1
, pp. 473-478
-
-
Karl, D.M.1
Beversdorf, L.2
Bjorkman, K.M.3
Church, M.J.4
Martinez, A.5
-
61
-
-
58149250475
-
Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11
-
Tripp HJ, Schwalbach MS, Meyer MM, Kitner JB, Breaker RR, et al. (2009) Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11. Environ Microbiol 11: 230-238.
-
(2009)
Environ Microbiol
, vol.11
, pp. 230-238
-
-
Tripp, H.J.1
Schwalbach, M.S.2
Meyer, M.M.3
Kitner, J.B.4
Breaker, R.R.5
-
62
-
-
77649128177
-
The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
-
Schwalbach MS, Tripp HJ, Steindler L, Smith DP, Giovannoni SJ, (2009) The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environ Microbiol 12: 490-500.
-
(2009)
Environ Microbiol
, vol.12
, pp. 490-500
-
-
Schwalbach, M.S.1
Tripp, H.J.2
Steindler, L.3
Smith, D.P.4
Giovannoni, S.J.5
-
63
-
-
0018889853
-
Distribution of methanol carbon between assimilation and oxidation pathways in methanol-grown Pseudomonas C
-
Ben-Bassat A, Goldberg I, Mateles RI, (1980) Distribution of methanol carbon between assimilation and oxidation pathways in methanol-grown Pseudomonas C. J Gen Microbiol 116: 213-223.
-
(1980)
J Gen Microbiol
, vol.116
, pp. 213-223
-
-
Ben-Bassat, A.1
Goldberg, I.2
Mateles, R.I.3
-
64
-
-
42049104578
-
SAR11 marine bacteria require exogenous reduced sulphur for growth
-
Tripp HJ, Kitner JB, Schwalbach MS, Dacey JW, Wilhelm LJ, et al. (2008) SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature 452: 741-744.
-
(2008)
Nature
, vol.452
, pp. 741-744
-
-
Tripp, H.J.1
Kitner, J.B.2
Schwalbach, M.S.3
Dacey, J.W.4
Wilhelm, L.J.5
-
65
-
-
33846476676
-
Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
-
King GM, Weber CF, (2007) Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat Rev Microbiol 5: 107-118.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 107-118
-
-
King, G.M.1
Weber, C.F.2
-
66
-
-
77749280248
-
Aerobic carboxydotrophy under extremely haloalkaline conditions in Alkalispirillum/Alkalilimnicola strains isolated from soda lakes
-
Sorokin DY, Tourova TP, Kovaleva OL, Kuenen JG, Muyzer G, (2010) Aerobic carboxydotrophy under extremely haloalkaline conditions in Alkalispirillum/Alkalilimnicola strains isolated from soda lakes. Microbiology 156: 819-827.
-
(2010)
Microbiology
, vol.156
, pp. 819-827
-
-
Sorokin, D.Y.1
Tourova, T.P.2
Kovaleva, O.L.3
Kuenen, J.G.4
Muyzer, G.5
-
67
-
-
80051986176
-
Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade
-
doi:10.1038/srep00013
-
Thrash JC, Boyd A, Huggett MJ, Grote J, Carini P, et al. (2011) Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade. Sci Rep 1 doi:10.1038/srep00013.
-
(2011)
Sci Rep
, vol.1
-
-
Thrash, J.C.1
Boyd, A.2
Huggett, M.J.3
Grote, J.4
Carini, P.5
-
68
-
-
66749108480
-
A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor
-
Atteia A, Adrait A, Brugiere S, Tardif M, van Lis R, et al. (2009) A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor. Mol Biol Evol 26: 1533-1548.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1533-1548
-
-
Atteia, A.1
Adrait, A.2
Brugiere, S.3
Tardif, M.4
van Lis, R.5
-
69
-
-
0025954883
-
Compartmentation of folate-mediated one-carbon metabolism in eukaryotes
-
Appling DR, (1991) Compartmentation of folate-mediated one-carbon metabolism in eukaryotes. FASEB J 5: 2645-2651.
-
(1991)
FASEB J
, vol.5
, pp. 2645-2651
-
-
Appling, D.R.1
-
70
-
-
77951170478
-
Mitochondrial C1-tetrahydrofolate synthase (MTHFD1L) supports the flow of mitochondrial one-carbon units into the methyl cycle in embryos
-
Pike ST, Rajendra R, Artzt K, Appling DR, (2009) Mitochondrial C1-tetrahydrofolate synthase (MTHFD1L) supports the flow of mitochondrial one-carbon units into the methyl cycle in embryos. J Biol Chem 285: 4612-4620.
-
(2009)
J Biol Chem
, vol.285
, pp. 4612-4620
-
-
Pike, S.T.1
Rajendra, R.2
Artzt, K.3
Appling, D.R.4
-
71
-
-
36949022294
-
From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism
-
doi:10.1371/journal.pcbi.0030219
-
Gabaldón T, Huynen MA, (2007) From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism. PLoS Comput Biol 3: e219 doi:10.1371/journal.pcbi.0030219.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Gabaldón, T.1
Huynen, M.A.2
-
72
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, et al. (2010) The Pfam protein families database. Nucleic Acids Res 38: D211-D222.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 211-222
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
-
73
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355-D360.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 355-360
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
74
-
-
75549088819
-
MicrobesOnline: an integrated portal for comparative and functional genomics
-
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, et al. (2009) MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res 38: D396-D400.
-
(2009)
Nucleic Acids Res
, vol.38
, pp. 396-400
-
-
Dehal, P.S.1
Joachimiak, M.P.2
Price, M.N.3
Bates, J.T.4
Baumohl, J.K.5
-
75
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar RC, (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
76
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
77
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D, (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
78
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
79
-
-
33747884042
-
A phylogenomic analysis of the Ascomycota
-
Robbertse B, Reeves JB, Schoch CL, Spatafora JW, (2006) A phylogenomic analysis of the Ascomycota. Fungal Genet Biol 43: 715-725.
-
(2006)
Fungal Genet Biol
, vol.43
, pp. 715-725
-
-
Robbertse, B.1
Reeves, J.B.2
Schoch, C.L.3
Spatafora, J.W.4
-
80
-
-
0005924596
-
-
Utrecht, Netherlands, Doctoral dissertation, University of Utrecht, Retrieved July 25, 2011, from website:
-
van Dongen S, (2000) Graph Clustering by Flow Simulation. Utrecht, Netherlands Doctoral dissertation, University of Utrecht Retrieved July 25, 2011, from website: http://igitur-archive.library.uu.nl/dissertations/1895620/inhoud.htm.
-
(2000)
Graph Clustering by Flow Simulation
-
-
van Dongen, S.1
-
81
-
-
38849200974
-
Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
-
Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ, (2007) Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol Direct 2: 27.
-
(2007)
Biol Direct
, vol.2
, pp. 27
-
-
Wilhelm, L.J.1
Tripp, H.J.2
Givan, S.A.3
Smith, D.P.4
Giovannoni, S.J.5
-
82
-
-
63849269776
-
Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome
-
Biers EJ, Sun S, Howard EC, (2009) Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome. Appl Environ Microbiol 75: 2221-2229.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2221-2229
-
-
Biers, E.J.1
Sun, S.2
Howard, E.C.3
|