메뉴 건너뛰기




Volumn 178, Issue 3, 1996, Pages 591-599

Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

Author keywords

[No Author keywords available]

Indexed keywords

AMINOTRANSFERASE; DNA FRAGMENT; ELONGATION FACTOR 2; GLUTAMIC ACID; RIBOSOME DNA; RNA HELICASE;

EID: 0030023659     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.3.591-599.1996     Document Type: Article
Times cited : (342)

References (42)
  • 3
    • 85035157710 scopus 로고    scopus 로고
    • Personal communication
    • Barns, S., and N. Pace. Personal communication
    • Barns, S.1    Pace, N.2
  • 4
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91:1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 5
    • 0025919296 scopus 로고
    • Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing
    • Britschgi, T. B., and S. J. Giovannoni. 1991. Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing Appl. Environ. Microbiol 57:1707-1713.
    • (1991) Appl. Environ. Microbiol , vol.57 , pp. 1707-1713
    • Britschgi, T.B.1    Giovannoni, S.J.2
  • 6
    • 0028939782 scopus 로고
    • Chromosomal organization and nucleotide sequence of the genes for elongation factors EF-α and EF-2 and ribosomal proteins S7 and SlO of the hyperthermophilic archaeum Desulfurococcus mobilis
    • Ceccarelli, E., M. Bochetta, R. Creti, A. M. Sanangelantoni, O. Tibinoni, and P. Cammarano. 1995. Chromosomal organization and nucleotide sequence of the genes for elongation factors EF-α and EF-2 and ribosomal proteins S7 and SlO of the hyperthermophilic archaeum Desulfurococcus mobilis. Mol. Gen. Genet 246:687-696
    • (1995) Mol. Gen. Genet , vol.246 , pp. 687-696
    • Ceccarelli, E.1    Bochetta, M.2    Creti, R.3    Sanangelantoni, A.M.4    Tibinoni, O.5    Cammarano, P.6
  • 7
    • 0028202438 scopus 로고
    • Evolution of translational elongation factor (EF) sequences: Reliability of global phylogenies inferred from EF-1α(TU) and EF-2(G) proteins
    • Creti, R., E. Ceddarelli, M. Bocchetta, A. M. Sanangelantoni, O. Tiboni, P. Palm, and P. Cammarano. 1994. Evolution of translational elongation factor (EF) sequences: reliability of global phylogenies inferred from EF-1α(TU) and EF-2(G) proteins Proc. Natl Acad. Sci. USA 91:3255-3259
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 3255-3259
    • Creti, R.1    Ceddarelli, E.2    Bocchetta, M.3    Sanangelantoni, A.M.4    Tiboni, O.5    Palm, P.6    Cammarano, P.7
  • 8
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 9
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E. F., K. Y. Wu, B. B. Prezelin, and R. V. M. Jovine. 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature (London) 371:695-697.
    • (1994) Nature (London) , vol.371 , pp. 695-697
    • DeLong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.M.4
  • 10
    • 0001468642 scopus 로고
    • A least squares distance algorithm for fitting additive trees to proximity data
    • DeSoete, G. A. 1983. A least squares distance algorithm for fitting additive trees to proximity data, Psychometrika 48:621-626.
    • (1983) Psychometrika , vol.48 , pp. 621-626
    • DeSoete, G.A.1
  • 11
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phytogenies' an approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phytogenies' an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 13
    • 0000122573 scopus 로고
    • Phylip-phylogeny inference package
    • Felsenstein, J. 1989. Phylip-phylogeny inference package. Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 14
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature (London) 356:148-149.
    • (1992) Nature (London) , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 15
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ Microbiol. 59:1294-1302.
    • (1993) Appl. Environ Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 16
    • 0027301893 scopus 로고
    • DbpA α DEAD box protein specifically activated by 23S rRNA
    • Fuller-Pace, F. V., S. M. Nicol, A. D. Reid, and D. P. Lane. 1993 DbpA α DEAD box protein specifically activated by 23S rRNA EMBO J 12:3619-3626.
    • (1993) EMBO J , vol.12 , pp. 3619-3626
    • Fuller-Pace, F.V.1    Nicol, S.M.2    Reid, A.D.3    Lane, D.P.4
  • 18
    • 0027399530 scopus 로고
    • Identification of protein regions by database similarity search
    • Gisb, W., and D. J. States. 1993. Identification of protein regions by database similarity search. Nat. Genet. 3:266-272.
    • (1993) Nat. Genet. , vol.3 , pp. 266-272
    • Gisb, W.1    States, D.J.2
  • 19
    • 0025765503 scopus 로고
    • The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III
    • Hansson, M., L. Rutberg, I. Schroder, and L. Hederstedt. 1991. The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III. J. Bacteriol. 173: 2590-2599.
    • (1991) J. Bacteriol. , vol.173 , pp. 2590-2599
    • Hansson, M.1    Rutberg, L.2    Schroder, I.3    Hederstedt, L.4
  • 20
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacterta, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • Iwabe, N., K. Kuma, M. Hasegawa, S. Osawa, and T. Miyata. 1989. Evolutionary relationship of archaebacteria, eubacterta, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 21
    • 0026594245 scopus 로고
    • Stable propagation of cosmid sized human DNA inserts in an F factor based vector
    • Kim, U.-J., H. Shizuya, P. J. de Jong, B. Birren, and M. Simon. 1992 Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res. 20:1083-1085.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1083-1085
    • Kim, U.-J.1    Shizuya, H.2    De Jong, P.J.3    Birren, B.4    Simon, M.5
  • 22
    • 0001857117 scopus 로고
    • 16S/23S sequencing
    • E. Stackebrandt and M Goodfellow (ed.), John Wiley & Sons, New York
    • Lane, D. J. 1991. 16S/23S sequencing, p. 115-176. In E. Stackebrandt and M Goodfellow (ed.), Nucleic acid techniques in bacterial systematics John Wiley & Sons, New York.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-176
    • Lane, D.J.1
  • 23
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesak, W., and E. Stackebrandt. 1992. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:5072-5078
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesak, W.1    Stackebrandt, E.2
  • 25
    • 85035159213 scopus 로고    scopus 로고
    • Unpublished data
    • Marsh, T. L., et al. Unpublished data
    • Marsh, T.L.1
  • 26
    • 0028902592 scopus 로고
    • Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder
    • McInerney, J. O., M. Wilkinson, J. W. Patching, T. M. Embley, and R. Powell. 1995. Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder. Appl. Environ. Microbiol 61: 1646-1648.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 1646-1648
    • McInerney, J.O.1    Wilkinson, M.2    Patching, J.W.3    Embley, T.M.4    Powell, R.5
  • 27
    • 0027957393 scopus 로고
    • fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen, G. J., H. Matsuda, R. Hagstrom, and R. Overbeek. 1994. fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:41-48.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 28
    • 0026356376 scopus 로고
    • Bacterial DNA replication initiation factor priA is related to proteins belonging to the 'Dead-box' family
    • Ouzounis, C. A., and B. J. Blencowe. 1991. Bacterial DNA replication initiation factor priA is related to proteins belonging to the 'Dead-box' family. Nucleic Acids Res. 19:6953.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6953
    • Ouzounis, C.A.1    Blencowe, B.J.2
  • 29
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations bv ribosomal RNA sequences
    • Pace, N. R., D. A. Stahl, D. J. Lane, and G. J. Olsen. 1986 The analysis of natural microbial populations bv ribosomal RNA sequences Adv. Microb. Ecol. 9:1-55.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 30
    • 0028165830 scopus 로고
    • Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
    • Raskin, L., J. M. Stomley, B. E. Rittman, and D. A. Stahl. 1994. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol 60:1232-1240.
    • (1994) Appl. Environ. Microbiol , vol.60 , pp. 1232-1240
    • Raskin, L.1    Stomley, J.M.2    Rittman, B.E.3    Stahl, D.A.4
  • 31
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., E. F. DeLong, and N. R. Pace. 1991 Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173:4371-4378.
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    Delong, E.F.2    Pace, N.R.3
  • 32
    • 0026703169 scopus 로고
    • Cloning and stable maintenance of 300-kilobase pair fragments of human DNA in Escherichia coli using an F-factor-based vector
    • Shizuya, H., B. Birren, U.-J. Kim, V. Mancino, T. Slepak, Y. Tachiri, and M. Simon. 1992. Cloning and stable maintenance of 300-kilobase pair fragments of human DNA in Escherichia coli using an F-factor-based vector Proc Natl Acad. Sci. USA 89:8794-8797.
    • (1992) Proc Natl Acad. Sci. USA , vol.89 , pp. 8794-8797
    • Shizuya, H.1    Birren, B.2    Kim, U.-J.3    Mancino, V.4    Slepak, T.5    Tachiri, Y.6    Simon, M.7
  • 33
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons, New York
    • Stahl, D. A., and R. I. Amman. 1991. Development and application of nucleic acid probes, p. 205-248. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics John Wiley & Sons, New York.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amman, R.I.2
  • 34
    • 37049185150 scopus 로고
    • Analysis of hydrothermal vent associated symbionts by ribosomal RNA sequences
    • Stahl, D. A., D. J. Lane, G. J. Olsen, and N. R. Pace. 1984. Analysis of hydrothermal vent associated symbionts by ribosomal RNA sequences. Science 224:409-411.
    • (1984) Science , vol.224 , pp. 409-411
    • Stahl, D.A.1    Lane, D.J.2    Olsen, G.J.3    Pace, N.R.4
  • 35
    • 9044226715 scopus 로고
    • Genes for stable RNAs and their expression in Archaea
    • M. Sebald (ed.), Springer-Verlag, New York
    • Thomm, M., and W. Hausner. 1993. Genes for stable RNAs and their expression in Archaea, p 36-53. In M. Sebald (ed.), Genetics and molecular biology of anaerobic bacteria. Springer-Verlag, New York.
    • (1993) Genetics and Molecular Biology of Anaerobic Bacteria , pp. 36-53
    • Thomm, M.1    Hausner, W.2
  • 36
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soybean field
    • Ueda, T., Y. Suga, and T. Malsuguchi. 1995. Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur. J. Soil Sci. 46:415-421.
    • (1995) Eur. J. Soil Sci. , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Malsuguchi, T.3
  • 38
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 39
    • 85035157878 scopus 로고    scopus 로고
    • Personal communication
    • Woese, C. R. Personal communication.
    • Woese, C.R.1
  • 40
    • 0025952777 scopus 로고
    • Archaeal phytogeny: Reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition induced artifacts
    • Woese, C. R., L. Achenbach, P. Rouviere, and L. Mandelco. 1991. Archaeal phytogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition induced artifacts. Syst Appl. Microbiol. 14:364-371
    • (1991) Syst Appl. Microbiol. , vol.14 , pp. 364-371
    • Woese, C.R.1    Achenbach, L.2    Rouviere, P.3    Mandelco, L.4
  • 41
    • 0025300402 scopus 로고
    • Towards a system of organisms; proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a system of organisms; proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad Sci. USA 87:4576-4579
    • (1990) Proc. Natl. Acad Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 42
    • 0026443498 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleolide sequences
    • Zharkikh, A., and W. H. Li. 1992. Statistical properties of bootstrap estimation of phylogenetic variability from nucleolide sequences. Mol Biol. Evol. 9:1119-1147.
    • (1992) Mol Biol. Evol. , vol.9 , pp. 1119-1147
    • Zharkikh, A.1    Li, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.