메뉴 건너뛰기




Volumn 228, Issue 2, 2013, Pages 258-266

Rules of engagement for base excision repair in chromatin

Author keywords

[No Author keywords available]

Indexed keywords

8 HYDROXYGUANINE; DNA GLYCOSYLTRANSFERASE; HYDROGEN PEROXIDE;

EID: 84868035470     PISSN: 00219541     EISSN: 10974652     Source Type: Journal    
DOI: 10.1002/jcp.24134     Document Type: Article
Times cited : (73)

References (111)
  • 1
    • 0034598944 scopus 로고    scopus 로고
    • Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites
    • Anderson JD, Widom J. 2000. Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites. J Mol Biol 296:979-987.
    • (2000) J Mol Biol , vol.296 , pp. 979-987
    • Anderson, J.D.1    Widom, J.2
  • 2
    • 3242715114 scopus 로고    scopus 로고
    • Reactive oxygen species: Metabolism, oxidative stress, and signal transduction
    • Apel K, Hirt H. 2004. Reactive oxygen species: Metabolism, oxidative stress, and signal transduction. Ann Rev Plant Biol 55:373-399.
    • (2004) Ann Rev Plant Biol , vol.55 , pp. 373-399
    • Apel, K.1    Hirt, H.2
  • 4
    • 0037934742 scopus 로고    scopus 로고
    • Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes
    • Beard BC, Wilson SH, Smerdon MJ. 2003. Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes. Proc Natl Acad Sci USA 100:7465-7470.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 7465-7470
    • Beard, B.C.1    Wilson, S.H.2    Smerdon, M.J.3
  • 5
    • 0034734386 scopus 로고    scopus 로고
    • Structural design of a eukaryotic DNA repair polymerase: DNA polymerase beta
    • Beard WA, Wilson SH. 2000. Structural design of a eukaryotic DNA repair polymerase: DNA polymerase beta. Mut Res 460:231-244.
    • (2000) Mut Res , vol.460 , pp. 231-244
    • Beard, W.A.1    Wilson, S.H.2
  • 6
    • 79959310470 scopus 로고    scopus 로고
    • Chromatin under mechanical stress: From single 30 nm fibers to single nucleosomes
    • Bednar J, Dimitrov S. 2011. Chromatin under mechanical stress: From single 30 nm fibers to single nucleosomes. FEBS J 278:2231-2243.
    • (2011) FEBS J , vol.278 , pp. 2231-2243
    • Bednar, J.1    Dimitrov, S.2
  • 9
    • 0035178567 scopus 로고    scopus 로고
    • Base excision repair processing of radiation-induced clustered DNA lesions
    • Blaisdell JO, Harrison L, Wallace SS. 2001. Base excision repair processing of radiation-induced clustered DNA lesions. Rad Prot Dosim 97:25-31.
    • (2001) Rad Prot Dosim , vol.97 , pp. 25-31
    • Blaisdell, J.O.1    Harrison, L.2    Wallace, S.S.3
  • 11
    • 0028927261 scopus 로고
    • Reactions of oxyl radicals with DNA
    • Breen AP, Murphy JA. 1995. Reactions of oxyl radicals with DNA. Free Rad Biol Med 18:1033-1077.
    • (1995) Free Rad Biol Med , vol.18 , pp. 1033-1077
    • Breen, A.P.1    Murphy, J.A.2
  • 12
    • 0034708226 scopus 로고    scopus 로고
    • Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
    • Bruner SD, Norman DP, Verdine GL. 2000. Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA. Nature 403:859-866.
    • (2000) Nature , vol.403 , pp. 859-866
    • Bruner, S.D.1    Norman, D.P.2    Verdine, G.L.3
  • 13
    • 78649838453 scopus 로고    scopus 로고
    • Single-pair FRET experiments on nucleosome conformational dynamics
    • Buning R, van Noort J. 2010. Single-pair FRET experiments on nucleosome conformational dynamics. Biochimie 92:1729-1740.
    • (2010) Biochimie , vol.92 , pp. 1729-1740
    • Buning, R.1    van Noort, J.2
  • 14
    • 48249095920 scopus 로고    scopus 로고
    • Single-strand break repair and genetic disease
    • Caldecott KW. 2008. Single-strand break repair and genetic disease. Nat Rev Genet 9:619-631.
    • (2008) Nat Rev Genet , vol.9 , pp. 619-631
    • Caldecott, K.W.1
  • 17
    • 33644674439 scopus 로고    scopus 로고
    • The organization and inheritance of the mitochondrial genome
    • Chen XJ, Butow RA. 2005. The organization and inheritance of the mitochondrial genome. Nat Rev Genet 6:815-825.
    • (2005) Nat Rev Genet , vol.6 , pp. 815-825
    • Chen, X.J.1    Butow, R.A.2
  • 18
  • 20
    • 44849118274 scopus 로고    scopus 로고
    • Two DNA-binding and nick recognition modules in human DNA ligase III
    • Cotner-Gohara E, Kim IK, Tomkinson AE, Ellenberger T. 2008. Two DNA-binding and nick recognition modules in human DNA ligase III. J Biol Chem 283:10764-10772.
    • (2008) J Biol Chem , vol.283 , pp. 10764-10772
    • Cotner-Gohara, E.1    Kim, I.K.2    Tomkinson, A.E.3    Ellenberger, T.4
  • 21
    • 27444431790 scopus 로고    scopus 로고
    • Induction of the human oxidized base-specific DNA glycosylase NEIL1 by reactive oxygen species
    • Das A, Hazra TK, Boldogh I, Mitra S, Bhakat KK. 2005. Induction of the human oxidized base-specific DNA glycosylase NEIL1 by reactive oxygen species. J Biol Chem 280:35272-35280.
    • (2005) J Biol Chem , vol.280 , pp. 35272-35280
    • Das, A.1    Hazra, T.K.2    Boldogh, I.3    Mitra, S.4    Bhakat, K.K.5
  • 22
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution
    • Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ. 2002. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution. J Mol Biol 319:1097-1113.
    • (2002) J Mol Biol , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 23
    • 34250900982 scopus 로고    scopus 로고
    • Base-excision repair of oxidative DNA damage
    • David SS, O'Shea VL, Kundu S. 2007. Base-excision repair of oxidative DNA damage. Nature 447:941-950.
    • (2007) Nature , vol.447 , pp. 941-950
    • David, S.S.1    O'Shea, V.L.2    Kundu, S.3
  • 24
    • 33846957403 scopus 로고    scopus 로고
    • A novel interaction between DNA ligase III and DNA polymerase gamma plays an essential role in mitochondrial DNA stability
    • De A, Campbell C. 2007. A novel interaction between DNA ligase III and DNA polymerase gamma plays an essential role in mitochondrial DNA stability. Biochem J 402:175-186.
    • (2007) Biochem J , vol.402 , pp. 175-186
    • De, A.1    Campbell, C.2
  • 25
    • 0026323008 scopus 로고
    • Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: Definition of a family of DNA repair enzymes
    • Demple B, Herman T, Chen DS. 1991. Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: Definition of a family of DNA repair enzymes. Proc Natl Acad Sci USA 88:11450-11454.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 11450-11454
    • Demple, B.1    Herman, T.2    Chen, D.S.3
  • 26
    • 84867466090 scopus 로고    scopus 로고
    • Oxidatively induced DNA damage: Mechanisms, repair and disease
    • Dizdaroglu M. 2012. Oxidatively induced DNA damage: Mechanisms, repair and disease. Cancer Lett.
    • (2012) Cancer Lett.
    • Dizdaroglu, M.1
  • 27
    • 0347379928 scopus 로고    scopus 로고
    • Repair of oxidized bases in DNA bubble structures by human DNA glycosylases NEIL1 and NEIL2
    • Dou H, Mitra S, Hazra TK. 2003. Repair of oxidized bases in DNA bubble structures by human DNA glycosylases NEIL1 and NEIL2. J Biol Chem 278:49679-49684.
    • (2003) J Biol Chem , vol.278 , pp. 49679-49684
    • Dou, H.1    Mitra, S.2    Hazra, T.K.3
  • 28
    • 41249094475 scopus 로고    scopus 로고
    • Interaction of the human DNA glycosylase NEIL1 with proliferating cell nuclear antigen. The potential for replication-associated repair of oxidized bases in mammalian genomes
    • Dou H, Theriot CA, Das A, Hegde ML, Matsumoto Y, Boldogh I, Hazra TK, Bhakat KK, Mitra S. 2008. Interaction of the human DNA glycosylase NEIL1 with proliferating cell nuclear antigen. The potential for replication-associated repair of oxidized bases in mammalian genomes. J Biol Chem 283:3130-3140.
    • (2008) J Biol Chem , vol.283 , pp. 3130-3140
    • Dou, H.1    Theriot, C.A.2    Das, A.3    Hegde, M.L.4    Matsumoto, Y.5    Boldogh, I.6    Hazra, T.K.7    Bhakat, K.K.8    Mitra, S.9
  • 30
    • 80053206516 scopus 로고    scopus 로고
    • Single Qdot-labeled glycosylase molecules use a wedge amino acid to probe for lesions while scanning along DNA
    • Dunn AR, Kad NM, Nelson SR, Warshaw DM, Wallace SS. 2011. Single Qdot-labeled glycosylase molecules use a wedge amino acid to probe for lesions while scanning along DNA. Nucleic Acids Res 39:7487-7498.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7487-7498
    • Dunn, A.R.1    Kad, N.M.2    Nelson, S.R.3    Warshaw, D.M.4    Wallace, S.S.5
  • 31
    • 50649116450 scopus 로고    scopus 로고
    • Eukaryotic DNA ligases: Structural and functional insights
    • Ellenberger T, Tomkinson AE. 2008. Eukaryotic DNA ligases: Structural and functional insights. Ann Rev Biochem 77:313-338.
    • (2008) Ann Rev Biochem , vol.77 , pp. 313-338
    • Ellenberger, T.1    Tomkinson, A.E.2
  • 32
    • 0029992687 scopus 로고    scopus 로고
    • Preferential targeting of oxidative base damage to internucleosomal DNA
    • Enright H, Miller WJ, Hays R, Floyd RA, Hebbel RP. 1996. Preferential targeting of oxidative base damage to internucleosomal DNA. Carcinogenesis 17:1175-1177.
    • (1996) Carcinogenesis , vol.17 , pp. 1175-1177
    • Enright, H.1    Miller, W.J.2    Hays, R.3    Floyd, R.A.4    Hebbel, R.P.5
  • 33
    • 4844227764 scopus 로고    scopus 로고
    • Antimicrobial reactive oxygen and nitrogen species: Concepts and controversies
    • Fang FC. 2004. Antimicrobial reactive oxygen and nitrogen species: Concepts and controversies. Nat Rev Microbiol 2:820-832.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 820-832
    • Fang, F.C.1
  • 34
    • 79960286223 scopus 로고    scopus 로고
    • Signal transduction by reactive oxygen species
    • Finkel T. 2011. Signal transduction by reactive oxygen species. J Cell Biol 194:7-15.
    • (2011) J Cell Biol , vol.194 , pp. 7-15
    • Finkel, T.1
  • 37
    • 0037925462 scopus 로고    scopus 로고
    • Structure of a trapped endonuclease III-DNA covalent intermediate
    • Fromme JC, Verdine GL. 2003. Structure of a trapped endonuclease III-DNA covalent intermediate. EMBO J 22:3461-3471.
    • (2003) EMBO J , vol.22 , pp. 3461-3471
    • Fromme, J.C.1    Verdine, G.L.2
  • 38
    • 0032493667 scopus 로고    scopus 로고
    • Evidence that partial unwrapping of DNA from nucleosomes facilitates the binding of heat shock factor following DNA replication in yeast
    • Geraghty DS, Sucic HB, Chen J, Pederson DS. 1998. Evidence that partial unwrapping of DNA from nucleosomes facilitates the binding of heat shock factor following DNA replication in yeast. J Biol Chem 273:20463-20472.
    • (1998) J Biol Chem , vol.273 , pp. 20463-20472
    • Geraghty, D.S.1    Sucic, H.B.2    Chen, J.3    Pederson, D.S.4
  • 39
    • 0030728449 scopus 로고    scopus 로고
    • The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites
    • Gorman MA, Morera S, Rothwell DG, de La Fortelle E, Mol CD, Tainer JA, Hickson ID, Freemont PS. 1997. The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J 16:6548-6558.
    • (1997) EMBO J , vol.16 , pp. 6548-6558
    • Gorman, M.A.1    Morera, S.2    Rothwell, D.G.3    de La Fortelle, E.4    Mol, C.D.5    Tainer, J.A.6    Hickson, I.D.7    Freemont, P.S.8
  • 40
    • 0037451299 scopus 로고    scopus 로고
    • Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling
    • Gowers DM, Halford SE. 2003. Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling. EMBO J 22:1410-1418.
    • (2003) EMBO J , vol.22 , pp. 1410-1418
    • Gowers, D.M.1    Halford, S.E.2
  • 41
    • 56749157389 scopus 로고    scopus 로고
    • Transcription-coupled DNA repair: Two decades of progress and surprises
    • Hanawalt PC, Spivak G. 2008. Transcription-coupled DNA repair: Two decades of progress and surprises. Nat Rev 9:958-970.
    • (2008) Nat Rev , vol.9 , pp. 958-970
    • Hanawalt, P.C.1    Spivak, G.2
  • 43
    • 0032788298 scopus 로고    scopus 로고
    • In vitro repair of synthetic ionizing radiation-induced multiply damaged DNA sites
    • Harrison L, Hatahet Z, Wallace SS. 1999. In vitro repair of synthetic ionizing radiation-induced multiply damaged DNA sites. J Mol Biol 290:667-684.
    • (1999) J Mol Biol , vol.290 , pp. 667-684
    • Harrison, L.1    Hatahet, Z.2    Wallace, S.S.3
  • 45
    • 33847613569 scopus 로고    scopus 로고
    • Oxidative DNA damage repair in mammalian cells: A new perspective
    • Hazra TK, Das A, Das S, Choudhury S, Kow YW, Roy R. 2007. Oxidative DNA damage repair in mammalian cells: A new perspective. DNA Repair 6:470-480.
    • (2007) DNA Repair , vol.6 , pp. 470-480
    • Hazra, T.K.1    Das, A.2    Das, S.3    Choudhury, S.4    Kow, Y.W.5    Roy, R.6
  • 47
    • 38049112778 scopus 로고    scopus 로고
    • Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells
    • Hegde ML, Hazra TK, Mitra S. 2008a. Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells. Cell Res 18:27-47.
    • (2008) Cell Res , vol.18 , pp. 27-47
    • Hegde, M.L.1    Hazra, T.K.2    Mitra, S.3
  • 48
    • 55249083320 scopus 로고    scopus 로고
    • Physical and functional interaction between human oxidized base-specific DNA glycosylase NEIL1 and flap endonuclease 1
    • Hegde ML, Theriot CA, Das A, Hegde PM, Guo Z, Gary RK, Hazra TK, Shen B, Mitra S. 2008b. Physical and functional interaction between human oxidized base-specific DNA glycosylase NEIL1 and flap endonuclease 1. J Biol Chem 283:27028-27037.
    • (2008) J Biol Chem , vol.283 , pp. 27028-27037
    • Hegde, M.L.1    Theriot, C.A.2    Das, A.3    Hegde, P.M.4    Guo, Z.5    Gary, R.K.6    Hazra, T.K.7    Shen, B.8    Mitra, S.9
  • 49
    • 77949528928 scopus 로고    scopus 로고
    • Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme
    • Hinz JM, Rodriguez Y, Smerdon MJ. 2010. Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme. Proc Natl Acad Sci USA 107:4646-4651.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 4646-4651
    • Hinz, J.M.1    Rodriguez, Y.2    Smerdon, M.J.3
  • 51
    • 0032555571 scopus 로고    scopus 로고
    • Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue
    • Ikeda S, Biswas T, Roy R, Izumi T, Boldogh I, Kurosky A, Sarker AH, Seki S, Mitra S. 1998. Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue. J Biol Chem 273:21585-21593.
    • (1998) J Biol Chem , vol.273 , pp. 21585-21593
    • Ikeda, S.1    Biswas, T.2    Roy, R.3    Izumi, T.4    Boldogh, I.5    Kurosky, A.6    Sarker, A.H.7    Seki, S.8    Mitra, S.9
  • 52
    • 0036773066 scopus 로고    scopus 로고
    • Differential intracellular localization of the human and mouse endonuclease III homologs and analysis of the sorting signals
    • Ikeda S, Kohmoto T, Tabata R, Seki Y. 2002. Differential intracellular localization of the human and mouse endonuclease III homologs and analysis of the sorting signals. DNA Repair 1:847-854.
    • (2002) DNA Repair , vol.1 , pp. 847-854
    • Ikeda, S.1    Kohmoto, T.2    Tabata, R.3    Seki, Y.4
  • 53
    • 0242268065 scopus 로고    scopus 로고
    • Mammalian DNA base excision repair proteins: Their interactions and role in repair of oxidative DNA damage
    • Izumi T, Wiederhold LR, Roy G, Roy R, Jaiswal A, Bhakat KK, Mitra S, Hazra TK. 2003. Mammalian DNA base excision repair proteins: Their interactions and role in repair of oxidative DNA damage. Toxicology 193:43-65.
    • (2003) Toxicology , vol.193 , pp. 43-65
    • Izumi, T.1    Wiederhold, L.R.2    Roy, G.3    Roy, R.4    Jaiswal, A.5    Bhakat, K.K.6    Mitra, S.7    Hazra, T.K.8
  • 54
    • 79961209184 scopus 로고    scopus 로고
    • 8-Oxo-7,8-dihydroguanine in DNA does not constitute a barrier to transcription, but is converted into transcription-blocking damage by OGG1
    • Kitsera N, Stathis D, Luhnsdorf B, Muller H, Carell T, Epe B, Khobta A. 2011. 8-Oxo-7, 8-dihydroguanine in DNA does not constitute a barrier to transcription, but is converted into transcription-blocking damage by OGG1. Nucleic Acids Res 39:5926-5934.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5926-5934
    • Kitsera, N.1    Stathis, D.2    Luhnsdorf, B.3    Muller, H.4    Carell, T.5    Epe, B.6    Khobta, A.7
  • 55
    • 0030957997 scopus 로고    scopus 로고
    • Second pathway for completion of human DNA base excision-repair: Reconstitution with purified proteins and requirement for DNase IV (FEN1)
    • Klungland A, Lindahl T. 1997. Second pathway for completion of human DNA base excision-repair: Reconstitution with purified proteins and requirement for DNase IV (FEN1). EMBO J 16:3341-3348.
    • (1997) EMBO J , vol.16 , pp. 3341-3348
    • Klungland, A.1    Lindahl, T.2
  • 56
    • 82155171284 scopus 로고    scopus 로고
    • Regulation of reactive oxygen species in stem cells and cancer stem cells
    • Kobayashi CI, Suda T. 2012. Regulation of reactive oxygen species in stem cells and cancer stem cells. J Cell Physiol 227:421-430.
    • (2012) J Cell Physiol , vol.227 , pp. 421-430
    • Kobayashi, C.I.1    Suda, T.2
  • 57
    • 44649130038 scopus 로고    scopus 로고
    • Transcriptional control by PARP-1: Chromatin modulation, enhancer-binding, coregulation, and insulation
    • Kraus WL. 2008. Transcriptional control by PARP-1: Chromatin modulation, enhancer-binding, coregulation, and insulation. Curr Opin Cell Biol 20:294-302.
    • (2008) Curr Opin Cell Biol , vol.20 , pp. 294-302
    • Kraus, W.L.1
  • 58
    • 0342350255 scopus 로고    scopus 로고
    • Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair
    • Levin DS, McKenna AE, Motycka TA, Matsumoto Y, Tomkinson AE. 2000. Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair. Curr Biol 10:919-922.
    • (2000) Curr Biol , vol.10 , pp. 919-922
    • Levin, D.S.1    McKenna, A.E.2    Motycka, T.A.3    Matsumoto, Y.4    Tomkinson, A.E.5
  • 59
    • 3542998667 scopus 로고    scopus 로고
    • Nucleosomes facilitate their own invasion
    • Li G, Widom J. 2004. Nucleosomes facilitate their own invasion. Nat Struct Mol Biol 11:763-769.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 763-769
    • Li, G.1    Widom, J.2
  • 60
  • 62
    • 0348010372 scopus 로고    scopus 로고
    • In vitro and in vivo dimerization of human endonuclease III stimulates its activity
    • Liu X, Choudhury S, Roy R. 2003. In vitro and in vivo dimerization of human endonuclease III stimulates its activity. J Biol Chem 278:50061-50069.
    • (2003) J Biol Chem , vol.278 , pp. 50061-50069
    • Liu, X.1    Choudhury, S.2    Roy, R.3
  • 63
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 64
    • 80052146061 scopus 로고    scopus 로고
    • Chromatin and the DNA damage response: The cancer connection
    • Luijsterburg MS, van Attikum H. 2011. Chromatin and the DNA damage response: The cancer connection. Mol Oncol 5:349-367.
    • (2011) Mol Oncol , vol.5 , pp. 349-367
    • Luijsterburg, M.S.1    van Attikum, H.2
  • 65
    • 0031045858 scopus 로고    scopus 로고
    • An alternative splicing event which occurs in mouse pachytene spermatocytes generates a form of DNA ligase III with distinct biochemical properties that may function in meiotic recombination
    • Mackey ZB, Ramos W, Levin DS, Walter CA, McCarrey JR, Tomkinson AE. 1997. An alternative splicing event which occurs in mouse pachytene spermatocytes generates a form of DNA ligase III with distinct biochemical properties that may function in meiotic recombination. Mol Cell Biol 17:989-998.
    • (1997) Mol Cell Biol , vol.17 , pp. 989-998
    • Mackey, Z.B.1    Ramos, W.2    Levin, D.S.3    Walter, C.A.4    McCarrey, J.R.5    Tomkinson, A.E.6
  • 66
    • 65949119310 scopus 로고    scopus 로고
    • How ERK1/2 activation controls cell proliferation and cell death: Is subcellular localization the answer
    • Mebratu Y, Tesfaigzi Y. 2009. How ERK1/2 activation controls cell proliferation and cell death: Is subcellular localization the answer? Cell Cycle 8:1168-1175.
    • (2009) Cell Cycle , vol.8 , pp. 1168-1175
    • Mebratu, Y.1    Tesfaigzi, Y.2
  • 68
    • 34548239142 scopus 로고    scopus 로고
    • ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A. Bbd nucleosomes
    • Menoni H, Gasparutto D, Hamiche A, Cadet J, Dimitrov S, Bouvet P, Angelov D. 2007. ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A. Bbd nucleosomes. Mol Cell Biol 27:5949-5956.
    • (2007) Mol Cell Biol , vol.27 , pp. 5949-5956
    • Menoni, H.1    Gasparutto, D.2    Hamiche, A.3    Cadet, J.4    Dimitrov, S.5    Bouvet, P.6    Angelov, D.7
  • 69
    • 0035163137 scopus 로고    scopus 로고
    • Complexities of the DNA base excision repair pathway for repair of oxidative DNA damage
    • Mitra S, Boldogh I, Izumi T, Hazra TK. 2001. Complexities of the DNA base excision repair pathway for repair of oxidative DNA damage. Environ Mol Mutagen 38:180-190.
    • (2001) Environ Mol Mutagen , vol.38 , pp. 180-190
    • Mitra, S.1    Boldogh, I.2    Izumi, T.3    Hazra, T.K.4
  • 70
    • 33847666362 scopus 로고    scopus 로고
    • Intracellular trafficking and regulation of mammalian AP-endonuclease 1 (APE1), an essential DNA repair protein
    • Mitra S, Izumi T, Boldogh I, Bhakat KK, Chattopadhyay R, Szczesny B. 2007. Intracellular trafficking and regulation of mammalian AP-endonuclease 1 (APE1), an essential DNA repair protein. DNA Repair 6:461-469.
    • (2007) DNA Repair , vol.6 , pp. 461-469
    • Mitra, S.1    Izumi, T.2    Boldogh, I.3    Bhakat, K.K.4    Chattopadhyay, R.5    Szczesny, B.6
  • 71
    • 0034719372 scopus 로고    scopus 로고
    • DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]
    • Mol CD, Izumi T, Mitra S, Tainer JA. 2000. DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]. Nature 403:451-456.
    • (2000) Nature , vol.403 , pp. 451-456
    • Mol, C.D.1    Izumi, T.2    Mitra, S.3    Tainer, J.A.4
  • 72
    • 34547850642 scopus 로고    scopus 로고
    • Different structural states in oligonucleosomes are required for early versus late steps of base excision repair
    • Nakanishi S, Prasad R, Wilson SH, Smerdon M. 2007. Different structural states in oligonucleosomes are required for early versus late steps of base excision repair. Nucleic Acids Res 35:4313-4321.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4313-4321
    • Nakanishi, S.1    Prasad, R.2    Wilson, S.H.3    Smerdon, M.4
  • 73
    • 0036847501 scopus 로고    scopus 로고
    • DNA base excision repair of uracil residues in reconstituted nucleosome core particles
    • Nilsen H, Lindahl T, Verreault A. 2002. DNA base excision repair of uracil residues in reconstituted nucleosome core particles. EMBO J 21:5943-5952.
    • (2002) EMBO J , vol.21 , pp. 5943-5952
    • Nilsen, H.1    Lindahl, T.2    Verreault, A.3
  • 74
    • 0032945268 scopus 로고    scopus 로고
    • Expression and differential intracellular localization of two major forms of human 8-oxoguanine DNA glycosylase encoded by alternatively spliced OGG1 mRNAs
    • Nishioka K, Ohtsubo T, Oda H, Fujiwara T, Kang D, Sugimachi K, Nakabeppu Y. 1999. Expression and differential intracellular localization of two major forms of human 8-oxoguanine DNA glycosylase encoded by alternatively spliced OGG1 mRNAs. Mol Biol Cell 10:1637-1652.
    • (1999) Mol Biol Cell , vol.10 , pp. 1637-1652
    • Nishioka, K.1    Ohtsubo, T.2    Oda, H.3    Fujiwara, T.4    Kang, D.5    Sugimachi, K.6    Nakabeppu, Y.7
  • 75
    • 34247178359 scopus 로고    scopus 로고
    • DNA repair in differentiated cells: Some new answers to old questions
    • Nouspikel T. 2007. DNA repair in differentiated cells: Some new answers to old questions. Neuroscience 145:1213-1221.
    • (2007) Neuroscience , vol.145 , pp. 1213-1221
    • Nouspikel, T.1
  • 76
    • 0036012794 scopus 로고    scopus 로고
    • DNA repair in terminally differentiated cells
    • Nouspikel T, Hanawalt PC. 2002. DNA repair in terminally differentiated cells. DNA Repair 1:59-75.
    • (2002) DNA Repair , vol.1 , pp. 59-75
    • Nouspikel, T.1    Hanawalt, P.C.2
  • 78
    • 75149158767 scopus 로고    scopus 로고
    • Non-specific DNA binding interferes with the efficient excision of oxidative lesions from chromatin by the human DNA glycosylase, NEIL1
    • Odell ID, Newick K, Heintz NH, Wallace SS, Pederson DS. 2010. Non-specific DNA binding interferes with the efficient excision of oxidative lesions from chromatin by the human DNA glycosylase, NEIL1. DNA Repair 9:134-143.
    • (2010) DNA Repair , vol.9 , pp. 134-143
    • Odell, I.D.1    Newick, K.2    Heintz, N.H.3    Wallace, S.S.4    Pederson, D.S.5
  • 79
    • 0032167424 scopus 로고    scopus 로고
    • Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
    • Parikh SS, Mol CD, Slupphaug G, Bharati S, Krokan HE, Tainer JA. 1998. Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J 17:5214-5226.
    • (1998) EMBO J , vol.17 , pp. 5214-5226
    • Parikh, S.S.1    Mol, C.D.2    Slupphaug, G.3    Bharati, S.4    Krokan, H.E.5    Tainer, J.A.6
  • 80
    • 9644289536 scopus 로고    scopus 로고
    • Human DNA ligase I completely encircles and partially unwinds nicked DNA
    • Pascal JM, O'Brien PJ, Tomkinson AE, Ellenberger T. 2004. Human DNA ligase I completely encircles and partially unwinds nicked DNA. Nature 432:473-478.
    • (2004) Nature , vol.432 , pp. 473-478
    • Pascal, J.M.1    O'Brien, P.J.2    Tomkinson, A.E.3    Ellenberger, T.4
  • 81
    • 0028049441 scopus 로고
    • Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP
    • Pelletier H, Sawaya MR, Kumar A, Wilson SH, Kraut J. 1994. Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science (New York, NY) 264:1891-1903.
    • (1994) Science (New York, NY) , vol.264 , pp. 1891-1903
    • Pelletier, H.1    Sawaya, M.R.2    Kumar, A.3    Wilson, S.H.4    Kraut, J.5
  • 82
    • 0029817866 scopus 로고    scopus 로고
    • Crystal structures of human DNA polymerase beta complexed with DNA: Implications for catalytic mechanism, processivity, and fidelity
    • Pelletier H, Sawaya MR, Wolfle W, Wilson SH, Kraut J. 1996. Crystal structures of human DNA polymerase beta complexed with DNA: Implications for catalytic mechanism, processivity, and fidelity. Biochemistry 35:12742-12761.
    • (1996) Biochemistry , vol.35 , pp. 12742-12761
    • Pelletier, H.1    Sawaya, M.R.2    Wolfle, W.3    Wilson, S.H.4    Kraut, J.5
  • 83
    • 0035966099 scopus 로고    scopus 로고
    • Two forms of mitochondrial DNA ligase III are produced in Xenopus laevis oocytes
    • Perez-Jannotti RM, Klein SM, Bogenhagen DF. 2001. Two forms of mitochondrial DNA ligase III are produced in Xenopus laevis oocytes. J Biol Chem 276:48978-48987.
    • (2001) J Biol Chem , vol.276 , pp. 48978-48987
    • Perez-Jannotti, R.M.1    Klein, S.M.2    Bogenhagen, D.F.3
  • 84
    • 0028791330 scopus 로고
    • Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation
    • Polach KJ, Widom J. 1995. Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation. J Mol Biol 254:130-149.
    • (1995) J Mol Biol , vol.254 , pp. 130-149
    • Polach, K.J.1    Widom, J.2
  • 85
    • 79952235291 scopus 로고    scopus 로고
    • Dynamics of DNA damage response proteins at DNA breaks: A focus on protein modifications
    • Polo SE, Jackson SP. 2011. Dynamics of DNA damage response proteins at DNA breaks: A focus on protein modifications. Genes Dev 25:409-433.
    • (2011) Genes Dev , vol.25 , pp. 409-433
    • Polo, S.E.1    Jackson, S.P.2
  • 86
    • 37549004382 scopus 로고    scopus 로고
    • Initiation of base excision repair of oxidative lesions in nucleosomes by the human, bifunctional DNA glycosylase NTH1
    • Prasad A, Wallace SS, Pederson DS. 2007. Initiation of base excision repair of oxidative lesions in nucleosomes by the human, bifunctional DNA glycosylase NTH1. Mol Cell Biol 27:8442-8453.
    • (2007) Mol Cell Biol , vol.27 , pp. 8442-8453
    • Prasad, A.1    Wallace, S.S.2    Pederson, D.S.3
  • 87
    • 78650399787 scopus 로고    scopus 로고
    • Substrate channeling in mammalian base excision repair pathways: Passing the baton
    • Prasad R, Shock DD, Beard WA, Wilson SH. 2010. Substrate channeling in mammalian base excision repair pathways: Passing the baton. J Biol Chem 285:40479-40488.
    • (2010) J Biol Chem , vol.285 , pp. 40479-40488
    • Prasad, R.1    Shock, D.D.2    Beard, W.A.3    Wilson, S.H.4
  • 89
    • 0032574770 scopus 로고    scopus 로고
    • Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to genotoxicity of free radicals
    • Ramana CV, Boldogh I, Izumi T, Mitra S. 1998. Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to genotoxicity of free radicals. Proc Natl Acad Sci USA 95:5061-5066.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 5061-5066
    • Ramana, C.V.1    Boldogh, I.2    Izumi, T.3    Mitra, S.4
  • 90
    • 84855269422 scopus 로고    scopus 로고
    • Targeted detection of in vivo endogenous DNA base damage reveals preferential base excision repair in the transcribed strand
    • Reis AM, Mills WK, Ramachandran I, Friedberg EC, Thompson D, Queimado L. 2012. Targeted detection of in vivo endogenous DNA base damage reveals preferential base excision repair in the transcribed strand. Nucleic Acids Res 40:206-219.
    • (2012) Nucleic Acids Res , vol.40 , pp. 206-219
    • Reis, A.M.1    Mills, W.K.2    Ramachandran, I.3    Friedberg, E.C.4    Thompson, D.5    Queimado, L.6
  • 91
    • 0014945567 scopus 로고
    • The lac repressor-operator interaction. 3. Kinetic studies
    • Riggs AD, Bourgeois S, Cohn M. 1970. The lac repressor-operator interaction. 3. Kinetic studies. J Mol Biol 53:401-417.
    • (1970) J Mol Biol , vol.53 , pp. 401-417
    • Riggs, A.D.1    Bourgeois, S.2    Cohn, M.3
  • 92
    • 62349120246 scopus 로고    scopus 로고
    • DNA repair in mammalian cells: Base excision repair: The long and short of it
    • Robertson AB, Klungland A, Rognes T, Leiros I. 2009. DNA repair in mammalian cells: Base excision repair: The long and short of it. Cell Mol Life Sci 66:981-993.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 981-993
    • Robertson, A.B.1    Klungland, A.2    Rognes, T.3    Leiros, I.4
  • 93
    • 33645314632 scopus 로고    scopus 로고
    • The nucleosome: A transparent, slippery, sticky and yet stable DNA-protein complex
    • Schiessel H. 2006. The nucleosome: A transparent, slippery, sticky and yet stable DNA-protein complex. Eur Phy J E Soft Matter 19:251-262.
    • (2006) Eur Phy J E Soft Matter , vol.19 , pp. 251-262
    • Schiessel, H.1
  • 94
    • 79551562850 scopus 로고    scopus 로고
    • Chromatin dynamics during repair of chromosomal DNA double-strand breaks
    • Sinha M, Peterson CL. 2009. Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics 1:371-385.
    • (2009) Epigenomics , vol.1 , pp. 371-385
    • Sinha, M.1    Peterson, C.L.2
  • 95
    • 0029904839 scopus 로고    scopus 로고
    • A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
    • Slupphaug G, Mol CD, Kavli B, Arvai AS, Krokan HE, Tainer JA. 1996. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 384:87-92.
    • (1996) Nature , vol.384 , pp. 87-92
    • Slupphaug, G.1    Mol, C.D.2    Kavli, B.3    Arvai, A.S.4    Krokan, H.E.5    Tainer, J.A.6
  • 97
    • 79955588797 scopus 로고    scopus 로고
    • Poly (ADP-ribose) polymerase (PARP) is not involved in base excision repair but PARP inhibition traps a single-strand intermediate
    • Strom CE, Johansson F, Uhlen M, Szigyarto CA, Erixon K, Helleday T. 2011. Poly (ADP-ribose) polymerase (PARP) is not involved in base excision repair but PARP inhibition traps a single-strand intermediate. Nucleic Acids Res 39:3166-3175.
    • (2011) Nucleic Acids Res , vol.39 , pp. 3166-3175
    • Strom, C.E.1    Johansson, F.2    Uhlen, M.3    Szigyarto, C.A.4    Erixon, K.5    Helleday, T.6
  • 99
    • 60849115568 scopus 로고    scopus 로고
    • Human Nei-like protein NEIL3 has AP lyase activity specific for single-stranded DNA and confers oxidative stress resistance in Escherichia coli mutant
    • Takao M, Oohata Y, Kitadokoro K, Kobayashi K, Iwai S, Yasui A, Yonei S, Zhang QM. 2009. Human Nei-like protein NEIL3 has AP lyase activity specific for single-stranded DNA and confers oxidative stress resistance in Escherichia coli mutant. Genes Cells 14:261-270.
    • (2009) Genes Cells , vol.14 , pp. 261-270
    • Takao, M.1    Oohata, Y.2    Kitadokoro, K.3    Kobayashi, K.4    Iwai, S.5    Yasui, A.6    Yonei, S.7    Zhang, Q.M.8
  • 101
    • 59849116500 scopus 로고    scopus 로고
    • Nucleosome dynamics as studied by single-pair fluorescence resonance energy transfer: A reevaluation
    • Tomschik M, van Holde K, Zlatanova J. 2009. Nucleosome dynamics as studied by single-pair fluorescence resonance energy transfer: A reevaluation. J Fluoresc 19:53-62.
    • (2009) J Fluoresc , vol.19 , pp. 53-62
    • Tomschik, M.1    van Holde, K.2    Zlatanova, J.3
  • 102
    • 65149084552 scopus 로고    scopus 로고
    • Crosstalk between histone modifications during the DNA damage response
    • van Attikum H, Gasser SM. 2009. Crosstalk between histone modifications during the DNA damage response. Trends Cell Biol 19:207-217.
    • (2009) Trends Cell Biol , vol.19 , pp. 207-217
    • van Attikum, H.1    Gasser, S.M.2
  • 103
    • 0003903126 scopus 로고
    • Rich A, editor., New York: Springer-Verlag.
    • van Holde KE. 1988. Rich A, editor. Chromatin, New York: Springer-Verlag.
    • (1988) Chromatin
    • van Holde, K.E.1
  • 104
    • 0016376109 scopus 로고
    • Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: Equilibrium aspects
    • von Hippel PH, Revzin A, Gross CA, Wang AC. 1974. Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: Equilibrium aspects. Proc Natl Acad Sci USA 71:4808-4812.
    • (1974) Proc Natl Acad Sci USA , vol.71 , pp. 4808-4812
    • von Hippel, P.H.1    Revzin, A.2    Gross, C.A.3    Wang, A.C.4
  • 106
    • 0022312389 scopus 로고
    • Biochemistry of DNA lesions
    • Ward JF. 1985. Biochemistry of DNA lesions. Radiat Res Suppl 8:S103-S111.
    • (1985) Radiat Res Suppl , vol.8
    • Ward, J.F.1
  • 107
    • 0024195429 scopus 로고
    • DNA damage produced by ionizing radiation in mammalian cells: Identities, mechanisms of formation, and reparability
    • Ward JF. 1988. DNA damage produced by ionizing radiation in mammalian cells: Identities, mechanisms of formation, and reparability. Prog Nucleic Acid Res Mol Biol 35:95-125.
    • (1988) Prog Nucleic Acid Res Mol Biol , vol.35 , pp. 95-125
    • Ward, J.F.1
  • 108
    • 0034093291 scopus 로고    scopus 로고
    • Passing the baton in base excision repair
    • Wilson SH, Kunkel TA. 2000. Passing the baton in base excision repair. Nat Struct Biol 7:176-178.
    • (2000) Nat Struct Biol , vol.7 , pp. 176-178
    • Wilson, S.H.1    Kunkel, T.A.2
  • 109
    • 4444325894 scopus 로고    scopus 로고
    • Attempted base excision repair of ionizing radiation damage in human lymphoblastoid cells produces lethal and mutagenic double strand breaks
    • Yang N, Galick H, Wallace SS. 2004. Attempted base excision repair of ionizing radiation damage in human lymphoblastoid cells produces lethal and mutagenic double strand breaks. DNA Repair 3:1323-1334.
    • (2004) DNA Repair , vol.3 , pp. 1323-1334
    • Yang, N.1    Galick, H.2    Wallace, S.S.3
  • 110
    • 79958072354 scopus 로고    scopus 로고
    • DNA polymerases provide a canon of strategies for translesion synthesis past oxidatively generated lesions
    • Zahn KE, Wallace SS, Doublie S. 2011. DNA polymerases provide a canon of strategies for translesion synthesis past oxidatively generated lesions. Curr Opin Struct Biol 21:358-369.
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 358-369
    • Zahn, K.E.1    Wallace, S.S.2    Doublie, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.