메뉴 건너뛰기




Volumn 20, Issue 3, 2008, Pages 294-302

Transcriptional control by PARP-1: chromatin modulation, enhancer-binding, coregulation, and insulation

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DIPHOSPHATE RIBOSE; BRCA1 PROTEIN; CYTOKINE; DNA BINDING PROTEIN; DNA METHYLTRANSFERASE; HEAT SHOCK PROTEIN; HISTONE; HISTONE DEACETYLASE 3; HORMONE; MITOGEN ACTIVATED PROTEIN KINASE 1; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE 1; NUCLEAR PROTEIN;

EID: 44649130038     PISSN: 09550674     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ceb.2008.03.006     Document Type: Review
Times cited : (371)

References (62)
  • 1
    • 0033198919 scopus 로고    scopus 로고
    • Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions
    • D'Amours D., Desnoyers S., D'Silva I., and Poirier G. Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions. Biochem J 342 (1999) 249-268
    • (1999) Biochem J , vol.342 , pp. 249-268
    • D'Amours, D.1    Desnoyers, S.2    D'Silva, I.3    Poirier, G.4
  • 2
    • 24344454692 scopus 로고    scopus 로고
    • Poly(ADP-ribosyl)ation by PARP-1: 'PAR-laying' NAD+ into a nuclear signal
    • Kim M.Y., Zhang T., and Kraus W.L. Poly(ADP-ribosyl)ation by PARP-1: 'PAR-laying' NAD+ into a nuclear signal. Genes Dev 19 (2005) 1951-1967
    • (2005) Genes Dev , vol.19 , pp. 1951-1967
    • Kim, M.Y.1    Zhang, T.2    Kraus, W.L.3
  • 3
    • 0038682011 scopus 로고    scopus 로고
    • PARP goes transcription
    • Kraus W.L., and Lis J. PARP goes transcription. Cell 113 (2003) 677-683
    • (2003) Cell , vol.113 , pp. 677-683
    • Kraus, W.L.1    Lis, J.2
  • 5
    • 10944227347 scopus 로고    scopus 로고
    • +-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1
    • +-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell 119 (2004) 803-814
    • (2004) Cell , vol.119 , pp. 803-814
    • Kim, M.Y.1    Mauro, S.2    Gevry, N.3    Lis, J.4    Kraus, W.L.5
  • 6
    • 35648955118 scopus 로고    scopus 로고
    • The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription
    • This paper provides direct visual evidence for PARP-1-dependent compaction of chromatin by using atomic force microscopy of individual molecules of chromatin assembled in vitro. In addition, this paper demonstrates that first, the DBD of PARP-1 is necessary and sufficient for binding to nucleosomes, but alone is unable to promote chromatin compaction and second, the catalytic domain of PARP-1, which does not bind nucleosomes on its own, cooperates with the DBD to promote chromatin compaction in a manner independent of its enzymatic activity. Thus, the catalytic domain of PARP-1 plays a previously uncharacterized role in chromatin compaction.
    • Wacker D.A., Ruhl D.D., Balagamwala E.H., Hope K.M., Zhang T., and Kraus W.L. The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription. Mol Cell Biol 27 (2007) 7475-7485. This paper provides direct visual evidence for PARP-1-dependent compaction of chromatin by using atomic force microscopy of individual molecules of chromatin assembled in vitro. In addition, this paper demonstrates that first, the DBD of PARP-1 is necessary and sufficient for binding to nucleosomes, but alone is unable to promote chromatin compaction and second, the catalytic domain of PARP-1, which does not bind nucleosomes on its own, cooperates with the DBD to promote chromatin compaction in a manner independent of its enzymatic activity. Thus, the catalytic domain of PARP-1 plays a previously uncharacterized role in chromatin compaction.
    • (2007) Mol Cell Biol , vol.27 , pp. 7475-7485
    • Wacker, D.A.1    Ruhl, D.D.2    Balagamwala, E.H.3    Hope, K.M.4    Zhang, T.5    Kraus, W.L.6
  • 10
    • 41549108573 scopus 로고    scopus 로고
    • A third zinc-binding domain of human poly(ADP-ribose) polymerase-1 coordinates DNA-dependent enzyme activation
    • Using spectroscopic and crystallographic analyses, this paper identifies and characterizes a previously unidentified third zinc-binding domain in PARP-1. This new zinc-binding domain, which is located between the amino-terminal zinc fingers in the DBD and the BRCT motif in the AMD, mediates interdomain contacts important for DNA-dependent enzyme activation. The crystal structure reveals a zinc ribbon fold and points to conserved residues that could form interdomain contacts that may help to couple the DNA binding and catalytic functions of PARP-1. Together, the results described in this paper provide a structural and mechanistic basis for the DBD-dependent allosteric activation of PARP-1 enzymatic activity.
    • Langelier M.F., Servent K.M., Rogers E.E., and Pascal J.M. A third zinc-binding domain of human poly(ADP-ribose) polymerase-1 coordinates DNA-dependent enzyme activation. J Biol Chem 283 (2008) 4105-4114. Using spectroscopic and crystallographic analyses, this paper identifies and characterizes a previously unidentified third zinc-binding domain in PARP-1. This new zinc-binding domain, which is located between the amino-terminal zinc fingers in the DBD and the BRCT motif in the AMD, mediates interdomain contacts important for DNA-dependent enzyme activation. The crystal structure reveals a zinc ribbon fold and points to conserved residues that could form interdomain contacts that may help to couple the DNA binding and catalytic functions of PARP-1. Together, the results described in this paper provide a structural and mechanistic basis for the DBD-dependent allosteric activation of PARP-1 enzymatic activity.
    • (2008) J Biol Chem , vol.283 , pp. 4105-4114
    • Langelier, M.F.1    Servent, K.M.2    Rogers, E.E.3    Pascal, J.M.4
  • 12
    • 10944253639 scopus 로고    scopus 로고
    • Activating the PARP-1 sensor component of the groucho/TLE1 corepressor complex mediates a CaMKinase IIdelta-dependent neurogenic gene activation pathway
    • Ju B.G., Solum D., Song E.J., Lee K.J., Rose D.W., Glass C.K., and Rosenfeld M.G. Activating the PARP-1 sensor component of the groucho/TLE1 corepressor complex mediates a CaMKinase IIdelta-dependent neurogenic gene activation pathway. Cell 119 (2004) 815-829
    • (2004) Cell , vol.119 , pp. 815-829
    • Ju, B.G.1    Solum, D.2    Song, E.J.3    Lee, K.J.4    Rose, D.W.5    Glass, C.K.6    Rosenfeld, M.G.7
  • 15
    • 33845445006 scopus 로고    scopus 로고
    • The histone variant mH2A1.1 interferes with transcription by down-regulating PARP-1 enzymatic activity
    • •], this paper describes interactions between PARP-1 and the 'nonhistone' domain of the histone variant macroH2A1 (specifically the 1.1 splice variant in this case), which may help to bring PARP-1 to chromatin and inhibit its enzymatic activity. These interactions between PARP-1 and macroH2A1 play a role in regulating gene expression. Specifically, this paper shows that RNAi-mediated depletion of macroH2A1 or PARP-1 blocks heat-shock-induced expression of the HSP70.1 gene. Together, these studies suggest an interesting functional link between PARP-1 and macroH2A.
    • •], this paper describes interactions between PARP-1 and the 'nonhistone' domain of the histone variant macroH2A1 (specifically the 1.1 splice variant in this case), which may help to bring PARP-1 to chromatin and inhibit its enzymatic activity. These interactions between PARP-1 and macroH2A1 play a role in regulating gene expression. Specifically, this paper shows that RNAi-mediated depletion of macroH2A1 or PARP-1 blocks heat-shock-induced expression of the HSP70.1 gene. Together, these studies suggest an interesting functional link between PARP-1 and macroH2A.
    • (2006) Genes Dev , vol.20 , pp. 3324-3336
    • Ouararhni, K.1    Hadj-Slimane, R.2    Ait-Si-Ali, S.3    Robin, P.4    Mietton, F.5    Harel-Bellan, A.6    Dimitrov, S.7    Hamiche, A.8
  • 17
    • 0842310349 scopus 로고    scopus 로고
    • CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
    • Yusufzai T.M., Tagami H., Nakatani Y., and Felsenfeld G. CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol Cell 13 (2004) 291-298
    • (2004) Mol Cell , vol.13 , pp. 291-298
    • Yusufzai, T.M.1    Tagami, H.2    Nakatani, Y.3    Felsenfeld, G.4
  • 18
    • 38949198773 scopus 로고    scopus 로고
    • Reciprocal binding of PARP-1 and histone H1 at promoters specifies transcriptional outcomes
    • Using ChIP-chip, this paper provides the first high-resolution map of PARP-1 and histone H1 localization across a mammalian genome. The data show that PARP-1 and H1 exhibit a reciprocal localization pattern at many Pol II-transcribed promoters, with enriched PARP-1 and depleted H1. This high PARP-1/H1 ratio is associated with actively transcribed genes. Gene-specific studies showed that PARP-1 acts to exclude H1 from a subset of PARP-1-stimulated promoters, suggesting a functional interplay between PARP-1 and H1 at the level of nucleosome binding reminiscent of the results from the biochemical studies presented in [5]. Together, these data indicate that PARP-1 and H1 have opposing actions at many Pol II-transcribed promoters.
    • Krishnakumar R., Gamble M.J., Frizzell K.M., Berrocal J.G., Kininis M., and Kraus W.L. Reciprocal binding of PARP-1 and histone H1 at promoters specifies transcriptional outcomes. Science 319 (2008) 819-821. Using ChIP-chip, this paper provides the first high-resolution map of PARP-1 and histone H1 localization across a mammalian genome. The data show that PARP-1 and H1 exhibit a reciprocal localization pattern at many Pol II-transcribed promoters, with enriched PARP-1 and depleted H1. This high PARP-1/H1 ratio is associated with actively transcribed genes. Gene-specific studies showed that PARP-1 acts to exclude H1 from a subset of PARP-1-stimulated promoters, suggesting a functional interplay between PARP-1 and H1 at the level of nucleosome binding reminiscent of the results from the biochemical studies presented in [5]. Together, these data indicate that PARP-1 and H1 have opposing actions at many Pol II-transcribed promoters.
    • (2008) Science , vol.319 , pp. 819-821
    • Krishnakumar, R.1    Gamble, M.J.2    Frizzell, K.M.3    Berrocal, J.G.4    Kininis, M.5    Kraus, W.L.6
  • 19
    • 33847784252 scopus 로고    scopus 로고
    • Loss of Parp-1 affects gene expression profile in a genome-wide manner in ES cells and liver cells
    • [see Erratum in BMC Genomics 2007, 8:227]
    • Ogino H., Nozaki T., Gunji A., Maeda M., Suzuki H., Ohta T., Murakami Y., Nakagama H., Sugimura T., and Masutani M. Loss of Parp-1 affects gene expression profile in a genome-wide manner in ES cells and liver cells. BMC Genomics 8 (2007) 41 [see Erratum in BMC Genomics 2007, 8:227]
    • (2007) BMC Genomics , vol.8 , pp. 41
    • Ogino, H.1    Nozaki, T.2    Gunji, A.3    Maeda, M.4    Suzuki, H.5    Ohta, T.6    Murakami, Y.7    Nakagama, H.8    Sugimura, T.9    Masutani, M.10
  • 21
    • 0142240271 scopus 로고    scopus 로고
    • Absence of poly(ADP-ribose)polymerase-1 alters nuclear factor-kappa B activation and gene expression of apoptosis regulators after reperfusion injury
    • Zingarelli B., Hake P.W., O'Connor M., Denenberg A., Kong S., and Aronow B.J. Absence of poly(ADP-ribose)polymerase-1 alters nuclear factor-kappa B activation and gene expression of apoptosis regulators after reperfusion injury. Mol Med 9 (2003) 143-153
    • (2003) Mol Med , vol.9 , pp. 143-153
    • Zingarelli, B.1    Hake, P.W.2    O'Connor, M.3    Denenberg, A.4    Kong, S.5    Aronow, B.J.6
  • 22
    • 0028922462 scopus 로고
    • Mice lacking ADPRT and poly(ADP-ribosyl)ation develop normally but are susceptible to skin disease
    • Wang Z.Q., Auer B., Stingl L., Berghammer H., Haidacher D., Schweiger M., and Wagner E.F. Mice lacking ADPRT and poly(ADP-ribosyl)ation develop normally but are susceptible to skin disease. Genes Dev 9 (1995) 509-520
    • (1995) Genes Dev , vol.9 , pp. 509-520
    • Wang, Z.Q.1    Auer, B.2    Stingl, L.3    Berghammer, H.4    Haidacher, D.5    Schweiger, M.6    Wagner, E.F.7
  • 23
    • 33745255099 scopus 로고    scopus 로고
    • A topoisomerase IIβ-mediated dsDNA break required for regulated transcription
    • This paper describes intriguing actions of PARP-1 at target gene promoters, adding a new twist to the exchange factor model. Specifically, this paper uses the estrogen-regulated TFF1 gene to study hormone-induced gene activation in the context of chromatin. Before activation, the TFF1 promoter is bound by a PARP-1 corepressor complex containing NCoR and the histone deacetylase HDAC3. Estrogen exposure rapidly promotes an exchange of the corepressor complex for a PARP-1 coactivator complex containing TopoIIβ, which transiently cleaves the promoter DNA. Recruitment of the PARP-1 coactivator complex also promotes the release of histone H1, the recruitment of HMGB1/2, changes in chromatin architecture, and ultimately increased transcription of the gene. This novel mechanism links the actions of two DNA-associated enzymes, namely PARP-1 and TopoIIβ, in the regulation of gene expression.
    • Ju B.G., Lunyak V.V., Perissi V., Garcia-Bassets I., Rose D.W., Glass C.K., and Rosenfeld M.G. A topoisomerase IIβ-mediated dsDNA break required for regulated transcription. Science 312 (2006) 1798-1802. This paper describes intriguing actions of PARP-1 at target gene promoters, adding a new twist to the exchange factor model. Specifically, this paper uses the estrogen-regulated TFF1 gene to study hormone-induced gene activation in the context of chromatin. Before activation, the TFF1 promoter is bound by a PARP-1 corepressor complex containing NCoR and the histone deacetylase HDAC3. Estrogen exposure rapidly promotes an exchange of the corepressor complex for a PARP-1 coactivator complex containing TopoIIβ, which transiently cleaves the promoter DNA. Recruitment of the PARP-1 coactivator complex also promotes the release of histone H1, the recruitment of HMGB1/2, changes in chromatin architecture, and ultimately increased transcription of the gene. This novel mechanism links the actions of two DNA-associated enzymes, namely PARP-1 and TopoIIβ, in the regulation of gene expression.
    • (2006) Science , vol.312 , pp. 1798-1802
    • Ju, B.G.1    Lunyak, V.V.2    Perissi, V.3    Garcia-Bassets, I.4    Rose, D.W.5    Glass, C.K.6    Rosenfeld, M.G.7
  • 25
    • 24744447821 scopus 로고    scopus 로고
    • The role of poly(ADP-ribose) in the DNA damage signaling network
    • Malanga M., and Althaus F.R. The role of poly(ADP-ribose) in the DNA damage signaling network. Biochem Cell Biol 83 (2005) 354-364
    • (2005) Biochem Cell Biol , vol.83 , pp. 354-364
    • Malanga, M.1    Althaus, F.R.2
  • 27
    • 0024406764 scopus 로고
    • The effect of poly(ADP-ribosyl)ation on native and H1-depleted chromatin. A role of poly(ADP-ribosyl)ation on core nucleosome structure
    • Huletsky A., de Murcia G., Muller S., Hengartner M., Menard L., Lamarre D., and Poirier G.G. The effect of poly(ADP-ribosyl)ation on native and H1-depleted chromatin. A role of poly(ADP-ribosyl)ation on core nucleosome structure. J Biol Chem 264 (1989) 8878-8886
    • (1989) J Biol Chem , vol.264 , pp. 8878-8886
    • Huletsky, A.1    de Murcia, G.2    Muller, S.3    Hengartner, M.4    Menard, L.5    Lamarre, D.6    Poirier, G.G.7
  • 28
    • 0037102454 scopus 로고    scopus 로고
    • The Drosophila heterochromatic gene encoding poly(ADP-ribose) polymerase (PARP) is required to modulate chromatin structure during development
    • Tulin A., Stewart D., and Spradling A.C. The Drosophila heterochromatic gene encoding poly(ADP-ribose) polymerase (PARP) is required to modulate chromatin structure during development. Genes Dev 16 (2002) 2108-2119
    • (2002) Genes Dev , vol.16 , pp. 2108-2119
    • Tulin, A.1    Stewart, D.2    Spradling, A.C.3
  • 29
    • 0037462597 scopus 로고    scopus 로고
    • Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci
    • Tulin A., and Spradling A. Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci. Science 299 (2003) 560-562
    • (2003) Science , vol.299 , pp. 560-562
    • Tulin, A.1    Spradling, A.2
  • 30
    • 34249898088 scopus 로고    scopus 로고
    • SET and PARP1 remove DEK from chromatin to permit access by the transcription machinery
    • +, PARP-1 PARylates and evicts DEK and itself from chromatin to permit the loading of the transcriptional machinery in a SET-independent manner. Thus, these studies point to a role for PARP-1 in regulating the composition of chromatin.
    • +, PARP-1 PARylates and evicts DEK and itself from chromatin to permit the loading of the transcriptional machinery in a SET-independent manner. Thus, these studies point to a role for PARP-1 in regulating the composition of chromatin.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 548-555
    • Gamble, M.J.1    Fisher, R.P.2
  • 31
    • 34250359929 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase 1 is inhibited by a histone H2A variant, macroH2A, and contributes to silencing of the inactive X chromosome
    • ••], this paper describes interactions between PARP-1 and the 'nonhistone' domain of the histone variant macroH2A1 (specifically the 1.2 splice variant in this case), which may help to bring PARP-1 to chromatin and inhibit its enzymatic activity. RNAi-mediated depletion of macroH2A1 or PARP-1 reactivates expression of an inactive X-linked GFP transgene in mouse embryo fibroblast cells, suggesting that PARP-1 participates in the maintenance of silencing. Together, these studies suggest an interesting functional link between PARP-1 and macroH2A.
    • ••], this paper describes interactions between PARP-1 and the 'nonhistone' domain of the histone variant macroH2A1 (specifically the 1.2 splice variant in this case), which may help to bring PARP-1 to chromatin and inhibit its enzymatic activity. RNAi-mediated depletion of macroH2A1 or PARP-1 reactivates expression of an inactive X-linked GFP transgene in mouse embryo fibroblast cells, suggesting that PARP-1 participates in the maintenance of silencing. Together, these studies suggest an interesting functional link between PARP-1 and macroH2A.
    • (2007) J Biol Chem , vol.282 , pp. 12851-12859
    • Nusinow, D.A.1    Hernandez-Munoz, I.2    Fazzio, T.G.3    Shah, G.M.4    Kraus, W.L.5    Panning, B.6
  • 32
    • 0347716450 scopus 로고    scopus 로고
    • Analysis of nucleotide sequence-dependent DNA binding of poly(ADP-ribose) polymerase in a purified system
    • Huang K., Tidyman W.E., Le K.U., Kirsten E., Kun E., and Ordahl C.P. Analysis of nucleotide sequence-dependent DNA binding of poly(ADP-ribose) polymerase in a purified system. Biochemistry 43 (2004) 217-223
    • (2004) Biochemistry , vol.43 , pp. 217-223
    • Huang, K.1    Tidyman, W.E.2    Le, K.U.3    Kirsten, E.4    Kun, E.5    Ordahl, C.P.6
  • 33
    • 0032959888 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase binds with transcription enhancer factor 1 to MCAT1 elements to regulate muscle-specific transcription
    • Butler A.J., and Ordahl C.P. Poly(ADP-ribose) polymerase binds with transcription enhancer factor 1 to MCAT1 elements to regulate muscle-specific transcription. Mol Cell Biol 19 (1999) 296-306
    • (1999) Mol Cell Biol , vol.19 , pp. 296-306
    • Butler, A.J.1    Ordahl, C.P.2
  • 34
    • 0035937826 scopus 로고    scopus 로고
    • A role for poly(ADP-ribose) polymerase in the transcriptional regulation of the melanoma growth stimulatory activity (CXCL1) gene expression
    • Nirodi C., NagDas S., Gygi S.P., Olson G., Aebersold R., and Richmond A. A role for poly(ADP-ribose) polymerase in the transcriptional regulation of the melanoma growth stimulatory activity (CXCL1) gene expression. J Biol Chem 276 (2001) 9366-9374
    • (2001) J Biol Chem , vol.276 , pp. 9366-9374
    • Nirodi, C.1    NagDas, S.2    Gygi, S.P.3    Olson, G.4    Aebersold, R.5    Richmond, A.6
  • 35
    • 0036348921 scopus 로고    scopus 로고
    • Sequence-specific binding of poly(ADP-ribose) polymerase-1 to the human T cell leukemia virus type-I tax responsive element
    • Zhang Z., Hildebrandt E.F., Simbulan-Rosenthal C.M., and Anderson M.G. Sequence-specific binding of poly(ADP-ribose) polymerase-1 to the human T cell leukemia virus type-I tax responsive element. Virology 296 (2002) 107-116
    • (2002) Virology , vol.296 , pp. 107-116
    • Zhang, Z.1    Hildebrandt, E.F.2    Simbulan-Rosenthal, C.M.3    Anderson, M.G.4
  • 36
    • 17944385649 scopus 로고    scopus 로고
    • Activation of Reg gene, a gene for insulin-producing beta-cell regeneration: poly(ADP-ribose) polymerase binds Reg promoter and regulates the transcription by autopoly(ADP-ribosyl)ation
    • Akiyama T., Takasawa S., Nata K., Kobayashi S., Abe M., Shervani N.J., Ikeda T., Nakagawa K., Unno M., Matsuno S., et al. Activation of Reg gene, a gene for insulin-producing beta-cell regeneration: poly(ADP-ribose) polymerase binds Reg promoter and regulates the transcription by autopoly(ADP-ribosyl)ation. Proc Natl Acad Sci U S A 98 (2001) 48-53
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 48-53
    • Akiyama, T.1    Takasawa, S.2    Nata, K.3    Kobayashi, S.4    Abe, M.5    Shervani, N.J.6    Ikeda, T.7    Nakagawa, K.8    Unno, M.9    Matsuno, S.10
  • 38
    • 33845711234 scopus 로고    scopus 로고
    • Differential regulation of CXC ligand 1 transcription in melanoma cell lines by poly(ADP-ribose) polymerase-1
    • •] provide new examples of gene regulation through sequence-specific binding of PARP-1 to DNA regulatory elements. This paper shows that unactivated PARP-1 binds to a DNA element in the CXCL1 gene promoter and acts to block the binding of NF-κB to an adjacent element. Activation of PARP-1 leads to autoPARylation, loss of PARP-1 binding, increased NF-κB binding, and enhanced CXCL1 expression.
    • •] provide new examples of gene regulation through sequence-specific binding of PARP-1 to DNA regulatory elements. This paper shows that unactivated PARP-1 binds to a DNA element in the CXCL1 gene promoter and acts to block the binding of NF-κB to an adjacent element. Activation of PARP-1 leads to autoPARylation, loss of PARP-1 binding, increased NF-κB binding, and enhanced CXCL1 expression.
    • (2006) Oncogene , vol.25 , pp. 7714-7722
    • Amiri, K.I.1    Ha, H.C.2    Smulson, M.E.3    Richmond, A.4
  • 39
    • 34548674438 scopus 로고    scopus 로고
    • Poly-(ADP-ribose) polymerase-1 (Parp-1) binds in a sequence-specific manner at the Bcl-6 locus and contributes to the regulation of Bcl-6 transcription
    • •] provide new examples of gene regulation through sequence-specific binding of PARP-1 to DNA regulatory elements. This paper identifies a conserved regulatory element in the first intron of the BCL6 gene to which PARP-1 binds. PARP inhibitors and PARP-1 depletion by RNAi induce BCL6 expression, suggesting that PARP-1 activation plays a role in inhibiting BCL6 expression.
    • •] provide new examples of gene regulation through sequence-specific binding of PARP-1 to DNA regulatory elements. This paper identifies a conserved regulatory element in the first intron of the BCL6 gene to which PARP-1 binds. PARP inhibitors and PARP-1 depletion by RNAi induce BCL6 expression, suggesting that PARP-1 activation plays a role in inhibiting BCL6 expression.
    • (2007) Oncogene , vol.26 , pp. 6244-6252
    • Ambrose, H.E.1    Papadopoulou, V.2    Beswick, R.W.3    Wagner, S.D.4
  • 40
    • 0036710459 scopus 로고    scopus 로고
    • The functional role of poly(ADP-ribose)polymerase 1 as novel coactivator of NF-kappaB in inflammatory disorders
    • Hassa P.O., and Hottiger M.O. The functional role of poly(ADP-ribose)polymerase 1 as novel coactivator of NF-kappaB in inflammatory disorders. Cell Mol Life Sci 59 (2002) 1534-1553
    • (2002) Cell Mol Life Sci , vol.59 , pp. 1534-1553
    • Hassa, P.O.1    Hottiger, M.O.2
  • 42
    • 37849007576 scopus 로고    scopus 로고
    • Regulation of poly(ADP-ribose) polymerase-1 (PARP-1) gene expression through the post-translational modification of Sp1: a nuclear target protein of PARP-1
    • Zaniolo K., Desnoyers S., Leclerc S., and Guerin S.L. Regulation of poly(ADP-ribose) polymerase-1 (PARP-1) gene expression through the post-translational modification of Sp1: a nuclear target protein of PARP-1. BMC Mol Biol 8 (2007) 96
    • (2007) BMC Mol Biol , vol.8 , pp. 96
    • Zaniolo, K.1    Desnoyers, S.2    Leclerc, S.3    Guerin, S.L.4
  • 43
    • 33846362869 scopus 로고    scopus 로고
    • DNA-independent PARP-1 activation by phosphorylated ERK2 increases Elk1 activity: a link to histone acetylation
    • •]. The results of this paper reveal an alternate signal-dependent mechanism for the activation of PARP-1 enzymatic activity that does not require DNA binding by PARP-1. Specifically, the binding of PARP-1 by ERK2 potently stimulates PARP-1 enzymatic activity and, as a result, increases PARP-1 autoPARylation. PARP-1 activated in this manner dramatically increases ERK2-dependent phosphorylation of its downstream effector, the DNA-binding transcription factor Elk1, resulting in an increase in histone acetylation and target gene expression. Thus, this study brings together the ERK2 signaling pathway and the gene-regulatory actions of PARP-1.
    • •]. The results of this paper reveal an alternate signal-dependent mechanism for the activation of PARP-1 enzymatic activity that does not require DNA binding by PARP-1. Specifically, the binding of PARP-1 by ERK2 potently stimulates PARP-1 enzymatic activity and, as a result, increases PARP-1 autoPARylation. PARP-1 activated in this manner dramatically increases ERK2-dependent phosphorylation of its downstream effector, the DNA-binding transcription factor Elk1, resulting in an increase in histone acetylation and target gene expression. Thus, this study brings together the ERK2 signaling pathway and the gene-regulatory actions of PARP-1.
    • (2007) Mol Cell , vol.25 , pp. 297-308
    • Cohen-Armon, M.1    Visochek, L.2    Rozensal, D.3    Kalal, A.4    Geistrikh, I.5    Klein, R.6    Bendetz-Nezer, S.7    Yao, Z.8    Seger, R.9
  • 44
    • 33751212444 scopus 로고    scopus 로고
    • A breaking strategy for topoisomerase IIbeta/PARP-1-dependent regulated transcription
    • Ju B.G., and Rosenfeld M.G. A breaking strategy for topoisomerase IIbeta/PARP-1-dependent regulated transcription. Cell Cycle 5 (2006) 2557-2560
    • (2006) Cell Cycle , vol.5 , pp. 2557-2560
    • Ju, B.G.1    Rosenfeld, M.G.2
  • 45
    • 33745278510 scopus 로고    scopus 로고
    • Promoter cleavage: a topoIIβ and PARP-1 collaboration
    • Lis J.T., and Kraus W.L. Promoter cleavage: a topoIIβ and PARP-1 collaboration. Cell 125 (2006) 1225-1227
    • (2006) Cell , vol.125 , pp. 1225-1227
    • Lis, J.T.1    Kraus, W.L.2
  • 46
    • 35548990188 scopus 로고    scopus 로고
    • We gather together: insulators and genome organization
    • Wallace J.A., and Felsenfeld G. We gather together: insulators and genome organization. Curr Opin Genet Dev 17 (2007) 400-407
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 400-407
    • Wallace, J.A.1    Felsenfeld, G.2
  • 47
    • 20444448434 scopus 로고    scopus 로고
    • Poly(ADP-ribosyl)ation and epigenetics. Is CTCF PARt of the plot?
    • Klenova E., and Ohlsson R. Poly(ADP-ribosyl)ation and epigenetics. Is CTCF PARt of the plot?. Cell Cycle 4 (2005) 96-101
    • (2005) Cell Cycle , vol.4 , pp. 96-101
    • Klenova, E.1    Ohlsson, R.2
  • 48
    • 2942537834 scopus 로고    scopus 로고
    • The 5′-HS4 chicken beta-globin insulator is a CTCF-dependent nuclear matrix-associated element
    • Yusufzai T.M., and Felsenfeld G. The 5′-HS4 chicken beta-globin insulator is a CTCF-dependent nuclear matrix-associated element. Proc Natl Acad Sci U S A 101 (2004) 8620-8624
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 8620-8624
    • Yusufzai, T.M.1    Felsenfeld, G.2
  • 49
    • 0033575278 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase and Ku autoantigen form a complex and synergistically bind to matrix attachment sequences
    • Galande S., and Kohwi-Shigematsu T. Poly(ADP-ribose) polymerase and Ku autoantigen form a complex and synergistically bind to matrix attachment sequences. J Biol Chem 274 (1999) 20521-20528
    • (1999) J Biol Chem , vol.274 , pp. 20521-20528
    • Galande, S.1    Kohwi-Shigematsu, T.2
  • 50
    • 21644484729 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase-1: association with nuclear lamins in rodent liver cells
    • Vidakovic M., Grdovic N., Quesada P., Bode J., and Poznanovic G. Poly(ADP-ribose) polymerase-1: association with nuclear lamins in rodent liver cells. J Cell Biochem 93 (2004) 1155-1168
    • (2004) J Cell Biochem , vol.93 , pp. 1155-1168
    • Vidakovic, M.1    Grdovic, N.2    Quesada, P.3    Bode, J.4    Poznanovic, G.5
  • 51
    • 24744461723 scopus 로고    scopus 로고
    • Co-localization of PARP-1 and lamin B in the nuclear architecture: a halo-fluorescence- and confocal-microscopy study
    • Vidakovic M., Koester M., Goetze S., Winkelmann S., Klar M., Poznanovic G., and Bode J. Co-localization of PARP-1 and lamin B in the nuclear architecture: a halo-fluorescence- and confocal-microscopy study. J Cell Biochem 96 (2005) 555-568
    • (2005) J Cell Biochem , vol.96 , pp. 555-568
    • Vidakovic, M.1    Koester, M.2    Goetze, S.3    Winkelmann, S.4    Klar, M.5    Poznanovic, G.6    Bode, J.7
  • 52
    • 12444340895 scopus 로고    scopus 로고
    • Poly(ADP-ribose): a co-regulator of DNA methylation?
    • Althaus F.R. Poly(ADP-ribose): a co-regulator of DNA methylation?. Oncogene 24 (2005) 11-12
    • (2005) Oncogene , vol.24 , pp. 11-12
    • Althaus, F.R.1
  • 55
    • 0034713375 scopus 로고    scopus 로고
    • Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    • Bell A.C., and Felsenfeld G. Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 405 (2000) 482-485
    • (2000) Nature , vol.405 , pp. 482-485
    • Bell, A.C.1    Felsenfeld, G.2
  • 56
    • 28844493947 scopus 로고    scopus 로고
    • Acetylation of poly(ADP-ribose) polymerase-1 by p300/CREB-binding protein regulates coactivation of NF-κB-dependent transcription
    • Hassa P.O., Haenni S.S., Buerki C., Meier N.I., Lane W.S., Owen H., Gersbach M., Imhof R., and Hottiger M.O. Acetylation of poly(ADP-ribose) polymerase-1 by p300/CREB-binding protein regulates coactivation of NF-κB-dependent transcription. J Biol Chem 280 (2005) 40450-40464
    • (2005) J Biol Chem , vol.280 , pp. 40450-40464
    • Hassa, P.O.1    Haenni, S.S.2    Buerki, C.3    Meier, N.I.4    Lane, W.S.5    Owen, H.6    Gersbach, M.7    Imhof, R.8    Hottiger, M.O.9
  • 57
    • 33646481320 scopus 로고    scopus 로고
    • Direct phosphorylation and regulation of poly(ADP-ribose) polymerase-1 by extracellular signal-regulated kinases 1/2
    • ••]. This paper first, demonstrates that direct phosphorylation of PARP-1 by ERK1/2 can enhance PARP-1 activity and second, identifies ERK1/2 phosphorylation sites on PARP-1 by mass spectrometry and site-directed mutagenesis. Although ERK1/2 pathway inhibitors blocked PARP-1 activation and PARP-1-mediated neuronal death, the effects on PARP-1-dependent gene expression were not determined.
    • ••]. This paper first, demonstrates that direct phosphorylation of PARP-1 by ERK1/2 can enhance PARP-1 activity and second, identifies ERK1/2 phosphorylation sites on PARP-1 by mass spectrometry and site-directed mutagenesis. Although ERK1/2 pathway inhibitors blocked PARP-1 activation and PARP-1-mediated neuronal death, the effects on PARP-1-dependent gene expression were not determined.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 7136-7141
    • Kauppinen, T.M.1    Chan, W.Y.2    Suh, S.W.3    Wiggins, A.K.4    Huang, E.J.5    Swanson, R.A.6
  • 58
    • 34247383146 scopus 로고    scopus 로고
    • c-Jun N-terminal kinase mediates hydrogen peroxide-induced cell death via sustained poly(ADP-ribose) polymerase-1 activation
    • Zhang S., Lin Y., Kim Y.S., Hande M.P., Liu Z.G., and Shen H.M. c-Jun N-terminal kinase mediates hydrogen peroxide-induced cell death via sustained poly(ADP-ribose) polymerase-1 activation. Cell Death Differ 14 (2007) 1001-1010
    • (2007) Cell Death Differ , vol.14 , pp. 1001-1010
    • Zhang, S.1    Lin, Y.2    Kim, Y.S.3    Hande, M.P.4    Liu, Z.G.5    Shen, H.M.6
  • 59
    • 18544384491 scopus 로고    scopus 로고
    • Regulation of poly(ADP-ribose) metabolism by poly(ADP-ribose) glycohydrolase: where and when?
    • Bonicalzi M.E., Haince J.F., Droit A., and Poirier G.G. Regulation of poly(ADP-ribose) metabolism by poly(ADP-ribose) glycohydrolase: where and when?. Cell Mol Life Sci 62 (2005) 739-750
    • (2005) Cell Mol Life Sci , vol.62 , pp. 739-750
    • Bonicalzi, M.E.1    Haince, J.F.2    Droit, A.3    Poirier, G.G.4
  • 60
    • 34247278118 scopus 로고    scopus 로고
    • Regulation of poly(ADP-ribose) polymerase 1 activity by the phosphorylation state of the nuclear NAD biosynthetic enzyme NMN adenylyl transferase 1
    • + synthase NMNAT-1 in the regulation of PARP-1 enzymatic activity. Specifically, the results show that NMNAT-1 stimulates PARP-1 automodification, as well as binds to PAR. Phosphorylation of NMNAT-1 by protein kinase C reduces its binding to PAR, suggesting that NMNAT-1 may be an endpoint of cell signaling pathways. Together, these results demonstrate that NMNAT-1 can enhance the activity of PARP-1 and, thus, amplify PARylation.
    • + synthase NMNAT-1 in the regulation of PARP-1 enzymatic activity. Specifically, the results show that NMNAT-1 stimulates PARP-1 automodification, as well as binds to PAR. Phosphorylation of NMNAT-1 by protein kinase C reduces its binding to PAR, suggesting that NMNAT-1 may be an endpoint of cell signaling pathways. Together, these results demonstrate that NMNAT-1 can enhance the activity of PARP-1 and, thus, amplify PARylation.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 3765-3770
    • Berger, F.1    Lau, C.2    Ziegler, M.3
  • 61
    • 33644777616 scopus 로고    scopus 로고
    • Drosophila poly(ADP-ribose) glycohydrolase mediates chromatin structure and SIR2-dependent silencing
    • Tulin A., Naumova N.M., Menon A.K., and Spradling A.C. Drosophila poly(ADP-ribose) glycohydrolase mediates chromatin structure and SIR2-dependent silencing. Genetics 172 (2006) 363-371
    • (2006) Genetics , vol.172 , pp. 363-371
    • Tulin, A.1    Naumova, N.M.2    Menon, A.K.3    Spradling, A.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.