-
1
-
-
0016273515
-
DNA ligase: Structure, mechanism, and function
-
Lehman, I. R. DNA ligase: structure, mechanism, and function. Science 186, 790-797 (1974).
-
(1974)
Science
, vol.186
, pp. 790-797
-
-
Lehman, I.R.1
-
2
-
-
0029056990
-
RNA capping enzyme and DNA ligase: A superfamily of covalent nucleotidyl transferases
-
Shuman, S. & Schwer, B. RNA capping enzyme and DNA ligase: a superfamily of covalent nucleotidyl transferases. Mol. Microbiol. 17, 405-410 (1995).
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 405-410
-
-
Shuman, S.1
Schwer, B.2
-
3
-
-
0026059034
-
In vitro mutagenesis and functional expression in Escherichia coli of a cDNA encoding the catalytic domain of human DNA ligase I
-
Kodama, K., Barnes, D. E. & Lindahl, T. In vitro mutagenesis and functional expression in Escherichia coli of a cDNA encoding the catalytic domain of human DNA ligase I. Nucleic Acids Res. 19, 6093-6099 (1991).
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6093-6099
-
-
Kodama, K.1
Barnes, D.E.2
Lindahl, T.3
-
4
-
-
0029744212
-
Identification of essential residues in Thermus thermophilus DNA ligase
-
Luo, J. & Barany, F. Identification of essential residues in Thermus thermophilus DNA ligase. Nucleic Acids Res. 24, 3079-3085 (1996).
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3079-3085
-
-
Luo, J.1
Barany, F.2
-
5
-
-
0032531971
-
Mutational analysis of Chlorella virus DNA ligase: Catalytic roles of domain I and motif VI
-
Sriskanda, V. & Shuman, S. Mutational analysis of Chlorella virus DNA ligase: catalytic roles of domain I and motif VI. Nucleic Acids Res. 26, 4618-4625 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4618-4625
-
-
Sriskanda, V.1
Shuman, S.2
-
6
-
-
0033618289
-
DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III
-
Mackey, Z. B. et al. DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III. J. Biol. Chem. 274, 21679-21687 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 21679-21687
-
-
Mackey, Z.B.1
-
7
-
-
0037082434
-
Role of nucleotidyltransferase motifs I, III and IV in the catalysis of phosphodiester bond formation by Chlorella virus DNA ligase
-
Sriskanda, V. & Shuman, S. Role of nucleotidyltransferase motifs I, III and IV in the catalysis of phosphodiester bond formation by Chlorella virus DNA ligase. Nucleic Acids Res. 30, 903-911 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 903-911
-
-
Sriskanda, V.1
Shuman, S.2
-
8
-
-
0029938467
-
Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7
-
Subramanya, H. S., Doherty, A. J., Ashford, S. R. & Wigley, D. B. Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7. Cell 85, 607-615 (1996).
-
(1996)
Cell
, vol.85
, pp. 607-615
-
-
Subramanya, H.S.1
Doherty, A.J.2
Ashford, S.R.3
Wigley, D.B.4
-
10
-
-
0034161570
-
Crystal structure of NAD(+)-dependent DNA ligase: Modular architecture and functional implications
-
Lee, J. Y. et al. Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J. 19, 1119-1129 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 1119-1129
-
-
Lee, J.Y.1
-
11
-
-
0033634655
-
Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining
-
Odell, M., Sriskanda, V., Shuman, S. & Nikolov, D. B. Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining. Mol. Cell 6, 1183-1193 (2000).
-
(2000)
Mol. Cell
, vol.6
, pp. 1183-1193
-
-
Odell, M.1
Sriskanda, V.2
Shuman, S.3
Nikolov, D.B.4
-
12
-
-
0034327406
-
Structural and mechanistic conservation in DNA ligases
-
Doherty, A. J. & Suh, S. W. Structural and mechanistic conservation in DNA ligases. Nucleic Acids Res. 28, 4051-4058 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4051-4058
-
-
Doherty, A.J.1
Suh, S.W.2
-
13
-
-
0034734323
-
DNA ligases in the repair and replication of DNA
-
Timson, D. J., Singleton, M. R. & Wigley, D. B. DNA ligases in the repair and replication of DNA. Mutat. Res. 460, 301-318 (2000).
-
(2000)
Mutat. Res.
, vol.460
, pp. 301-318
-
-
Timson, D.J.1
Singleton, M.R.2
Wigley, D.B.3
-
14
-
-
0036231641
-
ATP-dependent DNA ligases
-
Reviews 3005
-
Martin, I. V. & MacNeill, S. A. ATP-dependent DNA ligases. Genome Biol. 3, Reviews 3005 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Martin, I.V.1
MacNeill, S.A.2
-
15
-
-
0026489345
-
DNA ligase I from Saccharomyces cerevisiae: Physical and biochemical characterization of the CDC9 gene product
-
Tomkinson, A. E., Tappe, N. J. & Friedberg, E. C. DNA ligase I from Saccharomyces cerevisiae: physical and biochemical characterization of the CDC9 gene product. Biochemistry 31, 11762-11771 (1992).
-
(1992)
Biochemistry
, vol.31
, pp. 11762-11771
-
-
Tomkinson, A.E.1
Tappe, N.J.2
Friedberg, E.C.3
-
16
-
-
0033570011
-
Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4
-
Sriskanda, V., Schwer, B., Ho, C. K. & Shuman, S. Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4. Nucleic Acids Res. 27, 3953-3963 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3953-3963
-
-
Sriskanda, V.1
Schwer, B.2
Ho, C.K.3
Shuman, S.4
-
17
-
-
0032537803
-
DNA ligase IV binds to XRCC4 via a motif located between rather than within its BRCT domains
-
Grawunder, U., Zimmer, D. & Leiber, M. R. DNA ligase IV binds to XRCC4 via a motif located between rather than within its BRCT domains. Curr. Biol. 8, 873-876 (1998).
-
(1998)
Curr. Biol.
, vol.8
, pp. 873-876
-
-
Grawunder, U.1
Zimmer, D.2
Leiber, M.R.3
-
18
-
-
3242806042
-
Mutational analyses of the thermostable NAD(+)-dependent DNA ligase from Thermus filiformis
-
Jeon, H. J. et al. Mutational analyses of the thermostable NAD(+)-dependent DNA ligase from Thermus filiformis. FEMS Microbiol. Lett. 237, 111-118 (2004).
-
(2004)
FEMS Microbiol. Lett.
, vol.237
, pp. 111-118
-
-
Jeon, H.J.1
-
20
-
-
4143117765
-
Structural rearrangement accompanying NAD(+) synthesis within a bacterial DNA ligase crystal
-
Gajiwala, K. S. & Pinko, C. Structural rearrangement accompanying NAD(+) synthesis within a bacterial DNA ligase crystal. Structure 12, 1449-1459 (2004).
-
(2004)
Structure
, vol.12
, pp. 1449-1459
-
-
Gajiwala, K.S.1
Pinko, C.2
-
21
-
-
0038228666
-
X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes
-
Hakansson, K., Doherty, A. J., Shuman, S. & Wigley, D. B. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes. Cell 89, 545-553 (1997).
-
(1997)
Cell
, vol.89
, pp. 545-553
-
-
Hakansson, K.1
Doherty, A.J.2
Shuman, S.3
Wigley, D.B.4
-
22
-
-
0026680743
-
Mutations in the DNA ligase I gene of an individual with immunodeficiencies and cellular hypersensitivity to DNA-damaging agents
-
Barnes, D. E., Tomkinson, A. E., Lehmann, A. R., Webster, A. D. & Lindahl, T. Mutations in the DNA ligase I gene of an individual with immunodeficiencies and cellular hypersensitivity to DNA-damaging agents. Cell 69, 495-503 (1992).
-
(1992)
Cell
, vol.69
, pp. 495-503
-
-
Barnes, D.E.1
Tomkinson, A.E.2
Lehmann, A.R.3
Webster, A.D.4
Lindahl, T.5
-
23
-
-
0028047308
-
Aberrant DNA repair and DNA replication due to an inherited enzymatic defect in human DNA ligase I
-
Prigent, C., Satoh, M. S., Daly, G., Barnes, D. E. & Lindahl, T. Aberrant DNA repair and DNA replication due to an inherited enzymatic defect in human DNA ligase I. Mol. Cell. Biol. 14, 310-317 (1994).
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 310-317
-
-
Prigent, C.1
Satoh, M.S.2
Daly, G.3
Barnes, D.E.4
Lindahl, T.5
-
24
-
-
0037099729
-
Replication failure, genome instability, and increased cancer susceptibility in mice with a point mutation in the DNA ligase I gene
-
Harrison, C., Ketchen, A. M., Redhead, N. J., O'Sullivan, M. J. & Melton, D. W. Replication failure, genome instability, and increased cancer susceptibility in mice with a point mutation in the DNA ligase I gene. Cancer Res. 62, 4065-4074 (2002).
-
(2002)
Cancer Res.
, vol.62
, pp. 4065-4074
-
-
Harrison, C.1
Ketchen, A.M.2
Redhead, N.J.3
O'Sullivan, M.J.4
Melton, D.W.5
-
25
-
-
0032510217
-
The hyperthermophile chromosomal protein Sac7d sharply kinks DNA
-
Robinson, H. et al. The hyperthermophile chromosomal protein Sac7d sharply kinks DNA. Nature 392, 202-205 (1998).
-
(1998)
Nature
, vol.392
, pp. 202-205
-
-
Robinson, H.1
-
26
-
-
0033553405
-
Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA
-
Odell, M. & Shuman, S. Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA. J. Biol. Chem. 274, 14032-14039 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 14032-14039
-
-
Odell, M.1
Shuman, S.2
-
27
-
-
0034635347
-
Nick recognition by DNA ligases
-
Doherty, A. J. & Dafforn, T. R. Nick recognition by DNA ligases. J. Mol. Biol. 296, 43-56 (2000).
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 43-56
-
-
Doherty, A.J.1
Dafforn, T.R.2
-
28
-
-
0030767872
-
Ligation of RNA-containing duplexes by vaccinia DNA ligase
-
Sekiguchi, J. & Shuman, S. Ligation of RNA-containing duplexes by vaccinia DNA ligase. Biochemistry 36, 9073-9079 (1997).
-
(1997)
Biochemistry
, vol.36
, pp. 9073-9079
-
-
Sekiguchi, J.1
Shuman, S.2
-
29
-
-
0030929525
-
Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing
-
Rumbaugh, J. A., Murante, R. S., Shi, S. & Bambara, R. A. Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing. J. Biol. Chem. 272, 22591-22599 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22591-22599
-
-
Rumbaugh, J.A.1
Murante, R.S.2
Shi, S.3
Bambara, R.A.4
-
30
-
-
0032145356
-
Specificity and fidelity of strand joining by Chlorella virus DNA ligase
-
Sriskanda, V. & Shuman, S. Specificity and fidelity of strand joining by Chlorella virus DNA ligase. Nucleic Acids Res. 26, 3536-3541 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3536-3541
-
-
Sriskanda, V.1
Shuman, S.2
-
31
-
-
0028846525
-
Vaccinia virus DNA ligase: Specificity, fidelity, and inhibition
-
Shuman, S. Vaccinia virus DNA ligase: specificity, fidelity, and inhibition. Biochemistry 34, 16138-16147 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 16138-16147
-
-
Shuman, S.1
-
32
-
-
0033569841
-
Delayed DNA joining at 3′ mismatches by human DNA ligases
-
Bhagwat, A. S., Sanderson, R. J. & Lindahl, T. Delayed DNA joining at 3′ mismatches by human DNA ligases. Nucleic Acids Res. 27, 4028-4033 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4028-4033
-
-
Bhagwat, A.S.1
Sanderson, R.J.2
Lindahl, T.3
-
33
-
-
4344569343
-
DNA ligases ensure fidelity by interrogating minor groove contacts
-
Liu, P., Burdzy, A. & Sowers, L. C. DNA ligases ensure fidelity by interrogating minor groove contacts. Nucleic Acids Res. 32, 4503-4511 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4503-4511
-
-
Liu, P.1
Burdzy, A.2
Sowers, L.C.3
-
34
-
-
2442599792
-
Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
-
Corbett, K. D. & Berger, J. M. Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct. 33, 95-118 (2004).
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
35
-
-
0023801508
-
AMP-dependent DNA relaxation catalyzed by DNA ligase occurs by a nicking-closing mechanism
-
Montecucco, A. & Ciarrocchi, G. AMP-dependent DNA relaxation catalyzed by DNA ligase occurs by a nicking-closing mechanism. Nucleic Acids Res. 16, 7369-7381 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 7369-7381
-
-
Montecucco, A.1
Ciarrocchi, G.2
-
36
-
-
0033534370
-
Functional domains of an ATP-dependem DNA ligase
-
Doherty, A. J. & Wigley, D. B. Functional domains of an ATP-dependem DNA ligase. J. Mol. Biol. 285, 63-71 (1999).
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 63-71
-
-
Doherty, A.J.1
Wigley, D.B.2
-
37
-
-
0032031972
-
PCNA binding through a conserved motif
-
Warbrick, E. PCNA binding through a conserved motif. Bioessays 20, 195-199 (1998).
-
(1998)
Bioessays
, vol.20
, pp. 195-199
-
-
Warbrick, E.1
-
38
-
-
0342350255
-
Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair
-
Levin, D. S., McKenna, A. E., Motycka, T. A., Matsumoto, Y. & Tomkinson, A. E. Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair. Curr. Biol. 10, 919-922 (2000).
-
(2000)
Curr. Biol.
, vol.10
, pp. 919-922
-
-
Levin, D.S.1
McKenna, A.E.2
Motycka, T.A.3
Matsumoto, Y.4
Tomkinson, A.E.5
-
39
-
-
0030692134
-
An interaction between DNA ligase I and proliferating cell nuclear antigen: Implications for Okazaki fragment synthesis and joining
-
Levin, D. S., Bai, W., Yao, N., O'Donnell, M. & Tomkinson, A. E. An interaction between DNA ligase I and proliferating cell nuclear antigen: implications for Okazaki fragment synthesis and joining. Proc. Natl Acad. Sci. USA 94, 12863-12868 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 12863-12868
-
-
Levin, D.S.1
Bai, W.2
Yao, N.3
O'Donnell, M.4
Tomkinson, A.E.5
-
40
-
-
0037251411
-
A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Dionne, I., Nookala, R. K., Jackson, S. P., Doherty, A. I. & Bell, S. D. A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Cell 11, 275-282 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 275-282
-
-
Dionne, I.1
Nookala, R.K.2
Jackson, S.P.3
Doherty, A.I.4
Bell, S.D.5
-
41
-
-
0027420787
-
Expression of active human DNA ligase I in Escherichia coli cells that harbor a full-length DNA ligase I cDNA construct
-
Teraoka, H. et al. Expression of active human DNA ligase I in Escherichia coli cells that harbor a full-length DNA ligase I cDNA construct. J. Biol. Chem. 268, 24156-24162 (1993).
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 24156-24162
-
-
Teraoka, H.1
-
42
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne, G. D., Standaert, R. E., Karplus, P. A., Schreiber, S. L. & Clardy, J. Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol. 229, 105-124 (1993).
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.E.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
43
-
-
0031059866
-
-
(eds Carter, C. W. & Sweet, R. M.) (Academic, New York)
-
Otwinowski, Z. & Minor, W. in Methods Enzymology (eds Carter, C. W. & Sweet, R. M.) 307-326 (Academic, New York, 1997).
-
(1997)
Methods Enzymology
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
45
-
-
0031058188
-
-
(eds Sweet, R. M. & Carter, C. W.) (Academic, New York)
-
La Fortelle, E. D. & Bricogne, G. in Methods Enzymology (eds Sweet, R. M. & Carter, C. W.) 472-494 (Academic, New York, 1997).
-
(1997)
Methods Enzymology
, pp. 472-494
-
-
La Fortelle, E.D.1
Bricogne, G.2
-
46
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
-
47
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T. et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
48
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255 (1997).
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
-
49
-
-
0028850148
-
The N-terminal domain of human DNA ligase I contains the nuclear localization signal and directs the enzyme to sites of DNA replication
-
Montecucco, A. et al. The N-terminal domain of human DNA ligase I contains the nuclear localization signal and directs the enzyme to sites of DNA replication. EMBO J. 14, 5379-5386 (1995).
-
(1995)
EMBO J.
, vol.14
, pp. 5379-5386
-
-
Montecucco, A.1
-
50
-
-
0032493630
-
Thermodynamics of human DNA ligase I trimerization and association with DNA polymerase β
-
Dimitriadis, E. K. et al. Thermodynamics of human DNA ligase I trimerization and association with DNA polymerase β. J. Biol. Chem. 273, 20540-20550 (1998).
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20540-20550
-
-
Dimitriadis, E.K.1
|