Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution

Journal of Molecular Biology

Volumn 319, Issue 5, 2002, Pages 1097-1113

  Davey, Curt A ^a   Sargent, David F ^a   Luger, Karolin ^a   Maeder, Armin W ^a   Richmond, Timothy J ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Chromatin; Histone; Protein DNA interaction; Solvent interaction; X ray crystal structure

Indexed keywords

DNA; HISTONE; ION; SOLVENT; WATER;

ACCURACY; ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; BASE PAIRING; BINDING SITE; CRYSTAL STRUCTURE; DENSITY; DNA CONFORMATION; DNA HISTONE INTERACTION; DNA SEQUENCE; ELECTRICITY; HYDROGEN BOND; MOLECULE; NUCLEOSOME; PRIORITY JOURNAL;

INSERTION SEQUENCES;

EID: 0036307707     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)00386-8     Document Type: Article

References (47)

1. Crystal structure of the nucleosome core particle at 2.8 Å resolution
2. The atomic structure of the nucleosome core particle
3. Asymmetries in the nucleosome core particle at 2.5 Å resolution
4. Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions
5. Crystal structure of a nucleosome core particle containing the variant histone H2A.Z
6. Crystal structure of trp repressor/operator complex at atomic resolution
7. Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex
8. Crystal structure of a bZIP/DNA complex at 2.2 Å: Determinants of DNA specific recognition
9. Water release associated with specific binding of gal repressor
10. Sequence-specific DNA-binding dominated by dehydration
11. The role of water in protein-DNA interactions
12. An analysis of the relationship between hydration and protein-DNA interactions
13. Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
14. Protein-DNA interactions: A structural analysis
15. Non-sequence-specific DNA recognition: A structural perspective
16. Mobile nucleosomes - A general behavior
17. Positioning and stability of nucleosomes on MMTV 3′LTR sequences
18. Between objectivity and subjectivity
19. Resolution d'une structure cristalline lorsque les positions d'une partie des atomes sont connues: Traitement statistique
20. Ordered water structure around a B-DNA dodecamer. A quantitative study
21. Hydration of the phosphate group in double-helical DNA
22. X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution
23. The entropic cost of bound water in crystals and biomolecules
24. The role of the alpha-helix dipole in protein function and structure
25. Cation-∏ interactions in structural biology
26. X-ray crystal structure and characterization of halide-binding sites of human myeloperoxidase at 1.8 A resolution
27. The main role of the sequence-dependent DNA elasticity in determining the free energy of nucleosome formation on telomeric DNAs
28. Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
29. Chromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence
30. Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones
31. Can one measure the free energy of binding of the histone octamer to different DNA sequences by salt-dependent reconstitution?
32. 2 tetramer
33. Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state
34. Wet and dry interfaces: The role of solvent in protein-protein and protein-DNA recognition
35. Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI
36. Energetics and affinity of the histone octamer for defined DNA sequences
37. The histone tails of the nucleosome
38. Charge density-dependent strength of hydration and biological structure
39. Structural chemistry and biology of manganese metalloenzymes
40. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
41. Architecture of RNA polymerase II and implications for the transcription mechanism
42. Preparation of nucleosome core particle from recombinant histones
43. Processing of X-ray diffraction data collected in oscillation mode
44. Improved methods for building protein models in electron density maps and the location of errors in these models
45. Crystallography & NMR System: A new software suite for macromolecular structure determination
46. The MIDAS display system