Two DNA-binding and nick recognition modules in human DNA ligase III

Journal of Biological Chemistry

Volumn 283, Issue 16, 2008, Pages 10764-10772

  Cotner Gohara, Elizabeth ^a,b   Kim, In Kwon ^b   Tomkinson, Alan E ^c   Ellenberger, Tom ^b,d  

^a HARVARD MEDICAL SCHOOL   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^d Campus Box 8231 ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BINDING SITES; DNA; ENZYMES; MAMMALS; NUCLEIC ACIDS; ORGANIC ACIDS; ZINC;

BINDING MODULES; CATALYTIC CORES; CATALYTIC EFFICIENCIES; CONFORMATIONAL CHANGES; DNA BINDING AFFINITIES; DNA BINDINGS; DNA LIGASE; DNA SUBSTRATES; DO-MAINS; DUPLEX DNAS; HUMAN DNAS; IN VITRO; LIGASES; STRUCTURAL INFORMATIONS; ZINC FINGERS;

GENES;

LIGASE 3; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; UNCLASSIFIED DRUG; DNA; DNA LIGASE III; ZINC FINGER PROTEIN;

ARTICLE; BACTERIAL CELL; BINDING AFFINITY; CATALYSIS; CONTROLLED STUDY; DNA BINDING MOTIF; DOUBLE STRANDED DNA BREAK; ENZYME ACTIVITY; ESCHERICHIA COLI; IN VITRO STUDY; NICK END LABELING; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; ZINC FINGER MOTIF; AMINO ACID SEQUENCE; BIOCHEMISTRY; CHEMICAL STRUCTURE; CHEMISTRY; ENZYME ACTIVE SITE; GENE DELETION; HUMAN; KINETICS; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY;

MAMMALIA;

AMINO ACID SEQUENCE; BIOCHEMISTRY; CATALYTIC DOMAIN; CLONING, MOLECULAR; DNA; DNA LIGASES; GENE DELETION; HUMANS; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; ZINC FINGERS;

EID: 44849118274     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M708175200     Document Type: Article

References (49)

1. Waga, S., Bauer, G., and Stillman, B. (1994) J. Biol. Chem. 269, 10923-10934
2. Barnes, D. E., Tomkinson, A. E., Lehmann, A. R., Webster, A. D., and Lindahl, T. (1992) Cell 69, 495-503
3. Mackenney, V. J., Barnes, D. E., and Lindahl, T. (1997) J. Biol. Chem. 272, 11550-11556
4. Sleeth, K. M., Robson, R. L., and Dianov, G. L. (2004) Biochemistry 43, 12924-12930
5. Li, Z., Otevrel, T., Gao, Y., Cheng, H. L., Seed, B., Stamato, T. D., Taccioli, G. E., and Alt, F. W. (1995) Cell 83, 1079-1089
6. Moser, J., Kool, H., Giakzidis, I., Caldecott, K., Mullenders, L. H., and Fousteri, M. I. (2007) Mol. Cell 27, 311-323
7. Wang, M., Wu, W., Wu, W., Rosidi, B., Zhang, L., Wang, H., and Iliakis, G. (2006) Nucleic Acids Res. 34, 6170-6182
8. Wang, H., Rosidi, B., Perrault, R., Wang, M., Zhang, L., Windhofer, F., and Iliakis, G. (2005) Cancer Res. 65, 4020-4030
9. Lakshmipathy, U., and Campbell, C. (1999) Mol. Cell. Biol. 19, 3869-3876
10. Bogenhagen, D. F., Pinz, K. G., and Perez-Jannotti, R. M. (2001) Prog. Nucleic Acids Res. Mol. Biol. 68, 257-271
11. Lakshmipathy, U., and Campbell, C. (2001) Nucleic Acids Res. 29, 668-676
12. Puebla-Osorio, N., Lacey, D. B., Alt, F. W., and Zhu, C. (2006) Mol. Cell. Biol. 26, 3935-3941
13. Ahel, I., Rass, U., El-Khamisy, S. F., Katyal, S., Clements, P. M., McKinnon, P. J., Caldecott, K. W., and West, S. C. (2006) Nature 443, 713-716
14. Date, H., Onodera, O., Tanaka, H., Iwabuchi, K., Uekawa, K., Igarashi, S., Koike, R., Hiroi, T., Yuasa, T., Awaya, Y., Sakai, T., Takahashi, T., Nagatomo, H., Sekijima, Y., Kawachi, I., Takiyama, Y., Nishizawa, M., Fukuhara, N., Saito, K., Sugano, S., and Tsuji, S. (2001) Nat. Genet. 29, 184-188
15. Moreira, M. C., Barbot, C., Tachi, N., Kozuka, N., Uchida, E., Gibson, T., Mendonca, P., Costa, M., Barros, J., Yanagisawa, T., Watanabe, M., Ikeda, Y., Aoki, M., Nagata, T., Coutinho, P., Sequeiros, J., and Koenig, M. (2001) Nat. Genet. 29, 189-193
16. Tomkinson, A. E., and Mackey, Z. B. (1998) Mutat. Res. 407, 1-9
17. Tomkinson, A. E., and Levin, D. S. (1997) Bioessays 19, 893-901
18. Pascal, J. M., O'Brien, P. J., Tomkinson, A. E., and Ellenberger, T. (2004) Nature 432, 473-478
19. Martin, I. V., and MacNeill, S. A. (2002) Genome Biol. 3, Reviews 3005.1-3005.7
20. Nandakumar, J., Nair, P. A., and Shuman, S. (2007) Mol. Cell 26, 257-271
21. Lee, J. Y., Chang, C., Song, H. K., Moon, J., Yang, J. K., Kim, H. K., Kwon, S. T., and Suh, S. W. (2000) EMBO J. 19, 1119-1129
22. Nair, P. A., Nandakumar, J., Smith, P., Odell, M., Lima, C. D., and Shuman, S. (2008) Nat. Struct. Mol. Biol. 14, 770-778
23. Subramanya, H. S., Doherty, A. J., Ashford, S. R., and Wigley, D. B. (1996) Cell 85, 607-615
24. Hakansson, K., Doherty, A. J., Shuman, S., and Wigley, D. B. (1997) Cell 89, 545-553
25. Odell, M., Sriskanda, V., Shuman, S., and Nikolov, D. B. (2000) Mol. Cell 6, 1183-1193
26. Dulic, A., Bates, P. A., Zhang, X., Martin, S. R., Freemont, P. S., Lindahl, T., and Barnes, D. E. (2001) Biochemistry 40, 5906-5913
27. Taylor, R. M., Wickstead, B., Cronin, S., and Caldecott, K. W. (1998) Curr. Biol. 8, 877-880
28. Thornton, K. H., Krishnan, V. V., West, M. G., Popham, J., Ramirez, M., Thelen, M. P., and Cosman, M. (2001) Protein Expression Purif. 21, 401-411
29. Krishnan, V. V., Thornton, K. H., Thelen, M. P., and Cosman, M. (2001) Biochemistry 40, 13158-13166
30. Nash, R. A., Caldecott, K. W., Barnes, D. E., and Lindahl, T. (1997) Biochemistry 36, 5207-5211
31. Mackey, Z. B., Ramos, W., Levin, D. S., Walter, C. A., McCarrey, J. R., and Tomkinson, A. E. (1997) Mol. Cell. Biol. 17, 989-998
32. Kulczyk, A. W., Yang, J. C., and Neuhaus, D. (2004) J. Mol. Biol. 341, 723-738
33. Mackey, Z. B., Niedergang, C., Murcia, J. M., Leppard, J., Au, K., Chen, J., de Murcia, G., and Tomkinson, A. E. (1999) J. Biol. Chem. 274, 21679-21687
34. Taylor, R. M., Whitehouse, J., Cappelli, E., Frosina, G., and Caldecott, K. W. (1998) Nucleic Acids Res. 26, 4804-4810
35. Taylor, R. M., Whitehouse, C. J., and Caldecott, K. W. (2000) Nucleic Acids Res. 28, 3558-3563
36. Menissier-de Murcia, J., Molinete, M., Gradwohl, G., Simonin, F., and de Murcia, G. (1989) J. Mol. Biol. 210, 229-233
37. Gradwohl, G., Menissier de Murcia, J. M., Molinete, M., Simonin, F., Koken, M., Hoeijmakers, J. H., and de Murcia, G. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 2990-2994
38. Petrucco, S. (2003) Nucleic Acids Res. 31, 6689-6699
39. Le Cam, E., Fack, F., Menissier-de Murcia, J., Cognet, J. A., Barbin, A., Sarantoglou, V., Revet, B., Delain, E., and de Murcia, G. (1994) J. Mol. Biol. 235, 1062-1071
40. Petrucco, S., Volpi, G., Bolchi, A., Rivetti, C., and Ottonello, S. (2002) J. Biol. Chem. 277, 23675-23683
41. Windhofer, F., Wu, W., and Iliakis, G. (2008) J. Cell. Physiol. 213, 475-483
42. Audebert, M., Salles, B., and Calsou, P. (2004) J. Biol. Chem. 279, 55117-55126
43. Sekiguchi, J., and Shuman, S. (1997) Nucleic Acids Res. 25, 727-734
44. Sekiguchi, J., and Shuman, S. (1997) J. Virol. 71, 9679-9684
45. Odell, M., and Shuman, S. (1999) J. Biol. Chem. 274, 14032-14039
46. Leppard, J. B., Dong, Z., Mackey, Z. B., and Tomkinson, A. E. (2003) Mol. Cell. Biol. 23, 5919-5927
47. Chen, L., Trujillo, K., Sung, P., and Tomkinson, A. E. (2000) J. Biol. Chem. 275, 26196-26205
48. Tomkinson, A. E., Vijayakumar, S., Pascal, J. M., and Ellenberger, T. (2006) Chem. Rev. 106, 687-699
49. Pascal, J. M., Tsodikov, O. V., Hura, G. L., Song, W., Cotner, E. A., Classen, S., Tomkinson, A. E., Tainer, J. A., and Ellenberger, T. (2006) Mol. Cell 24, 279-291