-
1
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31: 3497-3500, 2003.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
2
-
-
84875168040
-
Hereditary folate malabsorption
-
(Online), edited by Pagon RA, Bird TD, Dolan CR, Stephens K. Seattle, WA: Univ. of Washington, Seattle
-
Diop-Bove N, Kronn D, Goldman ID. Hereditary folate malabsorption. In: GeneReviews (Online), edited by Pagon RA, Bird TD, Dolan CR, Stephens K. Seattle, WA: Univ. of Washington, Seattle, 2011. (www.ncbi. nlm.nih.gov/books/NBK1673/)
-
(2011)
GeneReviews
-
-
Diop-Bove, N.1
Kronn, D.2
Goldman, I.D.3
-
3
-
-
68849117681
-
Hypermethyl-ation of the human proton-coupled folate transporter (SLC46A1) minimal transcriptional regulatory region in an antifolate-resistant HeLa cell line
-
Diop-Bove NK, Wu J, Zhao R, Locker J, Goldman ID. Hypermethyl-ation of the human proton-coupled folate transporter (SLC46A1) minimal transcriptional regulatory region in an antifolate-resistant HeLa cell line. Mol Cancer Therap 8: 2424-2431, 2009.
-
(2009)
Mol Cancer Therap
, vol.8
, pp. 2424-2431
-
-
Diop-Bove, N.K.1
Wu, J.2
Zhao, R.3
Locker, J.4
Goldman, I.D.5
-
4
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113, 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
5
-
-
0347383758
-
Modeller: Generation and refinement of homology-based protein structure models
-
Fiser A, Sali A. Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol 374: 461-491, 2003.
-
(2003)
Methods Enzymol
, vol.374
, pp. 461-491
-
-
Fiser, A.1
Sali, A.2
-
6
-
-
0036143484
-
Hereditary folate malab-sorption: Family report and review of the literature
-
Geller J, Kronn D, Jayabose S, Sandoval C. Hereditary folate malab-sorption: family report and review of the literature. Medicine (Baltimore) 81: 51-68, 2002.
-
(2002)
Medicine (Baltimore)
, vol.81
, pp. 51-68
-
-
Geller, J.1
Kronn, D.2
Jayabose, S.3
Sandoval, C.4
-
7
-
-
33744788127
-
Analysis and prediction of helix-helix interactions in membrane channels and transporters
-
Hildebrand PW, Lorenzen S, Goede A, Preissner R. Analysis and prediction of helix-helix interactions in membrane channels and transporters. Proteins 64: 253-262, 2006.
-
(2006)
Proteins
, vol.64
, pp. 253-262
-
-
Hildebrand, P.W.1
Lorenzen, S.2
Goede, A.3
Preissner, R.4
-
8
-
-
0041489951
-
Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli
-
Huang Y, Lemieux MJ, Song J, Auer M, Wang DN. Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli. Science 301: 616-620, 2003.
-
(2003)
Science
, vol.301
, pp. 616-620
-
-
Huang, Y.1
Lemieux, M.J.2
Song, J.3
Auer, M.4
Wang, D.N.5
-
9
-
-
0032321487
-
Substituted-cysteine accessibility method
-
Karlin A, Akabas MH. Substituted-cysteine accessibility method. Methods Enzymol 293: 123-145, 1998.
-
(1998)
Methods Enzymol
, vol.293
, pp. 123-145
-
-
Karlin, A.1
Akabas, M.H.2
-
10
-
-
67650047730
-
Hereditary folate malabsorption: A positively charged amino acid at position 113 of the proton-coupled folate transporter (PCFT/SLC46A1) is required for folic acid binding
-
Lasry I, Berman B, Glaser F, Jansen G, Assaraf YG. Hereditary folate malabsorption: a positively charged amino acid at position 113 of the proton-coupled folate transporter (PCFT/SLC46A1) is required for folic acid binding. Biochem Biophys Res Commun 386: 426-431, 2009.
-
(2009)
Biochem Biophys Res Commun
, vol.386
, pp. 426-431
-
-
Lasry, I.1
Berman, B.2
Glaser, F.3
Jansen, G.4
Assaraf, Y.G.5
-
11
-
-
52649117496
-
A novel loss of function mutation in the proton-coupled folate transporter from a patient with hereditary folate malabsorption reveals that Arg 113 is crucial for function
-
Lasry I, Berman B, Straussberg R, Sofer Y, Bessler H, Sharkia M, Glaser F, Jansen G, Drori S, Assaraf YG. A novel loss of function mutation in the proton-coupled folate transporter from a patient with hereditary folate malabsorption reveals that Arg 113 is crucial for function. Blood 112: 2055-2061, 2008.
-
(2008)
Blood
, vol.112
, pp. 2055-2061
-
-
Lasry, I.1
Berman, B.2
Straussberg, R.3
Sofer, Y.4
Bessler, H.5
Sharkia, M.6
Glaser, F.7
Jansen, G.8
Drori, S.9
Assaraf, Y.G.10
-
12
-
-
33644971388
-
Variable gap penalty for protein sequence-structure alignment
-
Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A. Variable gap penalty for protein sequence-structure alignment. Protein Eng Des Sel 19: 129-133, 2006.
-
(2006)
Protein Eng Des Sel
, vol.19
, pp. 129-133
-
-
Madhusudhan, M.S.1
Marti-Renom, M.A.2
Sanchez, R.3
Sali, A.4
-
13
-
-
77249126602
-
Alignment of multiple protein structures based on sequence and structure features
-
Madhusudhan MS, Webb BM, Marti-Renom MA, Eswar N, Sali A. Alignment of multiple protein structures based on sequence and structure features. Protein Eng Des Sel 22: 569-574, 2009.
-
(2009)
Protein Eng Des Sel
, vol.22
, pp. 569-574
-
-
Madhusudhan, M.S.1
Webb, B.M.2
Marti-Renom, M.A.3
Eswar, N.4
Sali, A.5
-
14
-
-
78349241039
-
Properties of the Arg376 residue of the proton-coupled folate transporter (PCFT-SLC46A1) and a glu-tamine mutant causing hereditary folate malabsorption
-
Mahadeo K, Diop-Bove N, Shin D, Unal E, Teo J, Zhao R, Chang MH, Fulterer A, Romero MF, Goldman ID. Properties of the Arg376 residue of the proton-coupled folate transporter (PCFT-SLC46A1) and a glu-tamine mutant causing hereditary folate malabsorption. Am J Physiol Cell Physiol 299: C1153-C1161, 2010.
-
(2010)
Am J Physiol Cell Physiol
, vol.299
-
-
Mahadeo, K.1
Diop-Bove, N.2
Shin, D.3
Unal, E.4
Teo, J.5
Zhao, R.6
Chang, M.H.7
Fulterer, A.8
Romero, M.F.9
Goldman, I.D.10
-
15
-
-
33751244559
-
Identification of an intestinal folate transporter and the molecular basis for hereditary folate malabsorption
-
Qiu A, Jansen M, Sakaris A, Min SH, Chattopadhyay S, Tsai E, Sandoval C, Zhao R, Akabas MH, Goldman ID. Identification of an intestinal folate transporter and the molecular basis for hereditary folate malabsorption. Cell 127: 917-928, 2006.
-
(2006)
Cell
, vol.127
, pp. 917-928
-
-
Qiu, A.1
Jansen, M.2
Sakaris, A.3
Min, S.H.4
Chattopadhyay, S.5
Tsai, E.6
Sandoval, C.7
Zhao, R.8
Akabas, M.H.9
Goldman, I.D.10
-
16
-
-
33646075470
-
Multiple mapping method: A novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling
-
Rai BK, Fiser A. Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling. Proteins 63: 644-661, 2006.
-
(2006)
Proteins
, vol.63
, pp. 644-661
-
-
Rai, B.K.1
Fiser, A.2
-
17
-
-
33750414092
-
MMM: A sequence-to-structure alignment protocol
-
Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A. MMM: a sequence-to-structure alignment protocol. Bioinformatics 22: 2691-2692, 2006.
-
(2006)
Bioinformatics
, vol.22
, pp. 2691-2692
-
-
Rai, B.K.1
Madrid-Aliste, C.J.2
Fajardo, J.E.3
Fiser, A.4
-
18
-
-
77952752414
-
Transmembrane segment 11 appears to line the purine permeation pathway of the Plasmodium falci-parum equilibrative nucleoside transporter 1 (PfENT1)
-
Riegelhaupt PM, Frame IJ, Akabas MH. Transmembrane segment 11 appears to line the purine permeation pathway of the Plasmodium falci-parum equilibrative nucleoside transporter 1 (PfENT1). J Biol Chem 285: 17001-17010, 2010.
-
(2010)
J Biol Chem
, vol.285
, pp. 17001-17010
-
-
Riegelhaupt, P.M.1
Frame, I.J.2
Akabas, M.H.3
-
19
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A, Blundell TL. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234: 779-815, 1993.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
20
-
-
79955149687
-
Identification of novel mutations in the proton-coupled folate transporter (PCFT-SLC46A1) associated with hereditary folate malabsorption
-
Shin DS, Mahadeo K, Min SH, Diop-Bove N, Clayton P, Zhao R, Goldman ID. Identification of novel mutations in the proton-coupled folate transporter (PCFT-SLC46A1) associated with hereditary folate malabsorption. Mol Genet Metab 103: 33-37, 2011.
-
(2011)
Mol Genet Metab
, vol.103
, pp. 33-37
-
-
Shin, D.S.1
Mahadeo, K.2
Min, S.H.3
Diop-Bove, N.4
Clayton, P.5
Zhao, R.6
Goldman, I.D.7
-
21
-
-
78650055833
-
Functional roles of aspartate residues of the proton-coupled folate transporter (PCFT; SLC46A1); a D156Y mutation causing hereditary folate malabsorption
-
Shin DS, Min SH, Russell L, Zhao R, Fiser A, Goldman ID. Functional roles of aspartate residues of the proton-coupled folate transporter (PCFT; SLC46A1); a D156Y mutation causing hereditary folate malabsorption. Blood 116: 5162-5169, 2010.
-
(2010)
Blood
, vol.116
, pp. 5162-5169
-
-
Shin, D.S.1
Min, S.H.2
Russell, L.3
Zhao, R.4
Fiser, A.5
Goldman, I.D.6
-
22
-
-
84860528730
-
A P425R mutation of the proton-coupled folate transporter causing hereditary folate malabsorp-tion produces a highly selective alteration in folate binding
-
Shin DS, Zhao R, Yap EH, Fiser A, Goldman ID. A P425R mutation of the proton-coupled folate transporter causing hereditary folate malabsorp-tion produces a highly selective alteration in folate binding. Am J Physiol Cell Physiol 302: C1405-C1412, 2012.
-
(2012)
Am J Physiol Cell Physiol
, vol.302
-
-
Shin, D.S.1
Zhao, R.2
Yap, E.H.3
Fiser, A.4
Goldman, I.D.5
-
23
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
Sippl MJ. Recognition of errors in three-dimensional structures of proteins. Proteins 17: 355-362, 1993.
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
24
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Soding J. Protein homology detection by HMM-HMM comparison. Bioinformatics 21: 951-960, 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Soding, J.1
-
25
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
Tusnady GE, Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics 17: 849-850, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 849-850
-
-
Tusnady, G.E.1
Simon, I.2
-
26
-
-
67650526040
-
The functional roles of the His247 and His281 residues in folate and proton translocation mediated by the human proton-coupled folate transporter SLC46A1
-
Unal ES, Zhao R, Chang MH, Fiser A, Romero MF, Goldman ID. The functional roles of the His247 and His281 residues in folate and proton translocation mediated by the human proton-coupled folate transporter SLC46A1. J Biol Chem 284: 17846-17857, 2009.
-
(2009)
J Biol Chem
, vol.284
, pp. 17846-17857
-
-
Unal, E.S.1
Zhao, R.2
Chang, M.H.3
Fiser, A.4
Romero, M.F.5
Goldman, I.D.6
-
27
-
-
67650073369
-
Role of the glutamate 185 residue in proton translocation mediated by the proton-coupled folate transporter SLC46A1
-
Unal ES, Zhao R, Goldman ID. Role of the glutamate 185 residue in proton translocation mediated by the proton-coupled folate transporter SLC46A1. Am J Physiol Cell Physiol 297: C66-C74, 2009.
-
(2009)
Am J Physiol Cell Physiol
, vol.297
-
-
Unal, E.S.1
Zhao, R.2
Goldman, I.D.3
-
28
-
-
43649088482
-
N-linked glycosylation and its impact on the electrophoretic mobility and function of the human proton-coupled folate transporter (HsPCFT)
-
Unal ES, Zhao R, Qiu A, Goldman ID. N-linked glycosylation and its impact on the electrophoretic mobility and function of the human proton-coupled folate transporter (HsPCFT). Biochim Biophys Acta 1178: 1407-1414, 2008.
-
(2008)
Biochim Biophys Acta
, vol.1178
, pp. 1407-1414
-
-
Unal, E.S.1
Zhao, R.2
Qiu, A.3
Goldman, I.D.4
-
29
-
-
4644224936
-
Characterization of a folate transporter in HeLa cells with a low pH optimum and high affinity for pemetrexed distinct from the reduced folate carrier
-
Wang Y, Zhao R, Goldman ID. Characterization of a folate transporter in HeLa cells with a low pH optimum and high affinity for pemetrexed distinct from the reduced folate carrier. Clin Cancer Res 10: 6256-6264, 2004.
-
(2004)
Clin Cancer Res
, vol.10
, pp. 6256-6264
-
-
Wang, Y.1
Zhao, R.2
Goldman, I.D.3
-
30
-
-
0033817515
-
The mechanism of transport of the multitargeted antifolate, MTA-LY231514, and its cross resistance pattern in cell with impaired transport of methotrexate
-
Zhao R, Babani S, Gao F, Liu L, Goldman ID. The mechanism of transport of the multitargeted antifolate, MTA-LY231514, and its cross resistance pattern in cell with impaired transport of methotrexate. Clin Cancer Res 6: 3687-3695, 2000.
-
(2000)
Clin Cancer Res
, vol.6
, pp. 3687-3695
-
-
Zhao, R.1
Babani, S.2
Gao, F.3
Liu, L.4
Goldman, I.D.5
-
31
-
-
79960481261
-
Mechanisms of membrane transport of folates into cells and across epithelia
-
Zhao R, Diop-Bove N, Visentin M, Goldman ID. Mechanisms of membrane transport of folates into cells and across epithelia. Annu Rev Nutr 31: 177-201, 2011.
-
(2011)
Annu Rev Nutr
, vol.31
, pp. 177-201
-
-
Zhao, R.1
Diop-Bove, N.2
Visentin, M.3
Goldman, I.D.4
-
32
-
-
0842304934
-
A prominent low-pH methotrexate transport activity in human solid tumor cells: Contribution to the preservation of methotrexate pharmacological activity in HeLa cells lacking the reduced folate carrier
-
Zhao R, Gao F, Hanscom M, Goldman ID. A prominent low-pH methotrexate transport activity in human solid tumor cells: contribution to the preservation of methotrexate pharmacological activity in HeLa cells lacking the reduced folate carrier. Clin Cancer Res 10: 718-727, 2004.
-
(2004)
Clin Cancer Res
, vol.10
, pp. 718-727
-
-
Zhao, R.1
Gao, F.2
Hanscom, M.3
Goldman, I.D.4
-
33
-
-
59849093173
-
Membrane transporters and folate homeostasis: Intestinal absorption and transport into systemic compartments and tissues
-
Zhao R, Matherly LH, Goldman ID. Membrane transporters and folate homeostasis: intestinal absorption and transport into systemic compartments and tissues. Expert Rev Mol Med 11: e4, 2009.
-
(2009)
Expert Rev Mol Med
, vol.11
-
-
Zhao, R.1
Matherly, L.H.2
Goldman, I.D.3
-
34
-
-
34548026299
-
The spectrum of mutations in the PCFT gene, coding for an intestinal folate transporter, that are the basis for hereditary folate malabsorption
-
Zhao R, Min SH, Qiu A, Sakaris A, Goldberg GL, Sandoval C, Malatack JJ, Rosenblatt DS, Goldman ID. The spectrum of mutations in the PCFT gene, coding for an intestinal folate transporter, that are the basis for hereditary folate malabsorption. Blood 110: 1147-1152, 2007.
-
(2007)
Blood
, vol.110
, pp. 1147-1152
-
-
Zhao, R.1
Min, S.H.2
Qiu, A.3
Sakaris, A.4
Goldberg, G.L.5
Sandoval, C.6
Malatack, J.J.7
Rosenblatt, D.S.8
Goldman, I.D.9
-
35
-
-
79959873628
-
Random mutagenesis of the proton-coupled folate transporter (PCFT, SLC46A1), clustering of mutations and the bases for associated losses of function
-
Zhao R, Shin DS, Diop-Bove N, Ovits CG, Goldman ID. Random mutagenesis of the proton-coupled folate transporter (PCFT, SLC46A1), clustering of mutations and the bases for associated losses of function. J Biol Chem 286: 24150-24158, 2011.
-
(2011)
J Biol Chem
, vol.286
, pp. 24150-24158
-
-
Zhao, R.1
Shin, D.S.2
Diop-Bove, N.3
Ovits, C.G.4
Goldman, I.D.5
-
36
-
-
79751535507
-
Vulnerability of the cysteine-less proton-coupled folate transporter (PCFT-SLC46A1) to mutational stress associated with the substituted cysteine accessibility method
-
Zhao R, Shin DS, Goldman ID. Vulnerability of the cysteine-less proton-coupled folate transporter (PCFT-SLC46A1) to mutational stress associated with the substituted cysteine accessibility method. Biochim Biophys Acta 1808: 1140-1145, 2011.
-
(2011)
Biochim Biophys Acta
, vol.1808
, pp. 1140-1145
-
-
Zhao, R.1
Shin, D.S.2
Goldman, I.D.3
-
37
-
-
77950400117
-
Membrane topological analysis of the proton-coupled folate transporter (PCFT-SLC46A1) by the substituted cysteine accessibility method
-
Zhao R, Unal ES, Shin DS, Goldman ID. Membrane topological analysis of the proton-coupled folate transporter (PCFT-SLC46A1) by the substituted cysteine accessibility method. Biochemistry 49: 2925-2931, 2010.
-
(2010)
Biochemistry
, vol.49
, pp. 2925-2931
-
-
Zhao, R.1
Unal, E.S.2
Shin, D.S.3
Goldman, I.D.4
|