메뉴 건너뛰기




Volumn 31, Issue 13, 2003, Pages 3497-3500

Multiple sequence alignment with the Clustal series of programs

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ACCURACY; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; GENETIC ALGORITHM; INTERNET; MOLECULAR BIOLOGY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; ALGORITHM; CHEMISTRY; METHODOLOGY; SEQUENCE ANALYSIS;

EID: 0042121237     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg500     Document Type: Article
Times cited : (4210)

References (18)
  • 1
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
    • Higgins,D.G. and Sharp,P.M. (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene, 73, 237-244.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 3
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng,D.F. and Doolittle,R.F. (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J. Mol. Evol., 25, 351-360.
    • (1987) J. Mol. Evol. , vol.25 , pp. 351-360
    • Feng, D.F.1    Doolittle, R.F.2
  • 4
    • 0024245156 scopus 로고
    • A flexible method to align large numbers of biological sequences
    • Taylor,W.R. (1988) A flexible method to align large numbers of biological sequences. J. Mol. Evol., 28, 161-169.
    • (1988) J. Mol. Evol. , vol.28 , pp. 161-169
    • Taylor, W.R.1
  • 5
    • 0020714456 scopus 로고
    • Rapid similarity searches of nucleic acid and protein data banks
    • Wilbur,W.J. and Lipman,D.J. (1983) Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl Acad. Sci. USA, 80, 726-730.
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 726-730
    • Wilbur, W.J.1    Lipman, D.J.2
  • 7
    • 0028249912 scopus 로고
    • CLUSTAL V: Multiple alignment of DNA and protein sequences
    • Higgins,D.G. (1994) CLUSTAL V: multiple alignment of DNA and protein sequences. Methods Mol. Biol., 25, 307-318.
    • (1994) Methods Mol. Biol. , vol.25 , pp. 307-318
    • Higgins, D.G.1
  • 8
    • 0026605537 scopus 로고
    • CLUSTAL W: Improved software for multiple sequence alignment
    • Higgins,D.G., Bleasby,A.J. and Fuchs,R. (1992) CLUSTAL W: improved software for multiple sequence alignment. Comput. Appl. Biosci., 8, 189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 9
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou,N. and Nei,M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 10
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 11
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALwindows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson,J.D., Gibson,T.J., Plewniak,F., Jeanmougin,F. and Higgins,D.G. (1997) The CLUSTALwindows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 12
    • 0033753792 scopus 로고    scopus 로고
    • Clustalnet: The joining of Clustal and CORBA
    • Compagne,F. (2000) Clustalnet: the joining of Clustal and CORBA. Bioinformatics, 16, 606-612.
    • (2000) Bioinformatics , vol.16 , pp. 606-612
    • Compagne, F.1
  • 13
    • 0034255358 scopus 로고    scopus 로고
    • DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
    • Thompson,J.D., Plewniak,F., Thierry,J. and Poch,O. (2000) DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acids Res., 28, 2919-2926.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2919-2926
    • Thompson, J.D.1    Plewniak, F.2    Thierry, J.3    Poch, O.4
  • 14
    • 0031350056 scopus 로고    scopus 로고
    • NEXUS: An extensible file format for systematic information
    • Maddison,D.R., Swofford,D.L. and Maddison,W.P. (1997) NEXUS: an extensible file format for systematic information, Syst. Biol., 46, 590-621.
    • (1997) Syst. Biol. , vol.46 , pp. 590-621
    • Maddison, D.R.1    Swofford, D.L.2    Maddison, W.P.3
  • 15
    • 0028092214 scopus 로고
    • Amino acid substitution during functionally constrained divergent evolution of protein sequences
    • Benner,S.A., Cohen,M.A. and Gonnet,G.H. (1994) Amino acid substitution during functionally constrained divergent evolution of protein sequences. Protein Eng., 7, 1323-1332.
    • (1994) Protein Eng. , vol.7 , pp. 1323-1332
    • Benner, S.A.1    Cohen, M.A.2    Gonnet, G.H.3
  • 17
    • 0036857358 scopus 로고    scopus 로고
    • Quick Tree: Building huge Neighbour-Joining trees of protein sequences
    • Howe,K., Bateman,A. and Durbin,R. (2002) Quick Tree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics, 11, 1546-1547.
    • (2002) Bioinformatics , vol.11 , pp. 1546-1547
    • Howe, K.1    Bateman, A.2    Durbin, R.3
  • 18
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • Perrière,G. and Gouy,M. (1996) WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.