Alignment of multiple protein structures based on sequence and structure features

Protein Engineering, Design and Selection

Volumn 22, Issue 9, 2009, Pages 569-574

  Madhusudhan, M S ^a,b,c   Webb, Benjamin M ^a,b   Marti Renom, Marc A ^a,b,d   Eswar, Narayanan ^a,b,e   Sali, Andrej ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c BIOINFORMATICS INSTITUTE   (Singapore)

^d CENTRO DE INVESTIGACIÓN PRÍNCIPE FELIPE   (Spain)

^e DUPONT COMPANY   (United States)

Author keywords

Dynamic programming; Guide tree; Multiple structure alignment; RMSD; Structure overlap

Indexed keywords

ACCESSIBLE SURFACE AREAS; AMINO ACID RESIDUES; FEATURE WEIGHT; GAINING INSIGHTS; GAP PENALTIES; GUIDE TREE; MATRIX; MULTIPLE ALIGNMENT; MULTIPLE STRUCTURES; OPTIMAL ALIGNMENTS; PAIRWISE ALIGNMENT; PARAMETER VALUES; PROTEIN ALIGNMENT; PROTEIN EVOLUTION; PROTEIN STRUCTURES; RMSD; SCORING FUNCTIONS; SECONDARY STRUCTURES; SHORT SEGMENTS; STRUCTURE FEATURES; STRUCTURE OVERLAP;

ALIGNMENT; AMINO ACIDS; OPTIMIZATION; PROTEINS;

DYNAMIC PROGRAMMING;

AMINO ACID SEQUENCE; ARTICLE; DATA BASE; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT;

ALGORITHMS; AMINO ACID SEQUENCE; DATABASES, PROTEIN; PROTEIN CONFORMATION; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 77249126602     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzp040     Document Type: Article

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