Variable gap penalty for protein sequence-structure alignment

Protein Engineering, Design and Selection

Volumn 19, Issue 3, 2006, Pages 129-133

  Madhusudhan, M S ^a   Marti Renom, Marc A ^a   Sanchez, Roberto ^b   Sali, Andrej ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b MOUNT SINAI SCHOOL OF MEDICINE   (United States)

Author keywords

Comparative protein structure modeling; Gap penalty function; Homology modeling; Sequence structure alignment

Indexed keywords

ALGORITHMS; DYNAMIC PROGRAMMING; MATHEMATICAL MODELS; PARAMETER ESTIMATION;

COMPARATIVE PROTEIN STRUCTURE MODELING; GAP PENALTY FUNCTION; HOMOLOGY MODELING; SEQUENCE-STRUCTURE ALIGNMENT;

PROTEINS;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; STATISTICAL SIGNIFICANCE;

ALGORITHMS; AMINO ACID SEQUENCE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 33644971388     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzj005     Document Type: Article

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