-
1
-
-
2942575993
-
A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology
-
DOI 10.1016/j.molcel.2004.05.006, PII S1097276504002734
-
S. Sato, C. Tomomori-Sato, T.J. Parmely, L. Florens, B. Zybailov, S.K. Swanson, C.A.S. Banks, J. Jin, Y. Cai, M.P. Washburn, J.W. Conaway, and R.C. Conaway A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology Mol. Cell 14 2004 685 691 (Pubitemid 38739090)
-
(2004)
Molecular Cell
, vol.14
, Issue.5
, pp. 685-691
-
-
Sato, S.1
Tomomori-Sato, C.2
Parmely, T.J.3
Florens, L.4
Zybailov, B.5
Swanson, S.K.6
Banks, C.A.S.7
Jin, J.8
Cai, Y.9
Washburn, M.P.10
Conaway, J.W.11
Conaway, R.C.12
-
2
-
-
79957599759
-
Mitotic spindle proteomics in Chinese hamster ovary cells
-
M.K. Bonner, D.S. Poole, T. Xu, A. Sarkeshik, J.R. Yates III, and A.R. Skop Mitotic spindle proteomics in Chinese hamster ovary cells PloS One 6 2011 e20489
-
(2011)
PloS One
, vol.6
, pp. 20489
-
-
Bonner, M.K.1
Poole, D.S.2
Xu, T.3
Sarkeshik, A.4
Yates Iii, J.R.5
Skop, A.R.6
-
3
-
-
84869081189
-
Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: A strategy for identification of novel cancer markers
-
P. Mauri, A. Scarpa, A.C. Nascimbeni, L. Benazzi, E. Parmagnani, A. Mafficini, M.D. Peruta, C. Bassi, K. Miyazaki, and C. Sorio Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: a strategy for identification of novel cancer markers FASEB J. 22 2005 1 22
-
(2005)
FASEB J.
, vol.22
, pp. 1-22
-
-
Mauri, P.1
Scarpa, A.2
Nascimbeni, A.C.3
Benazzi, L.4
Parmagnani, E.5
Mafficini, A.6
Peruta, M.D.7
Bassi, C.8
Miyazaki, K.9
Sorio, C.10
-
4
-
-
23044439399
-
Multidimensional protein identification technology (MudPIT): Technical overview of a profiling method optimized for the comprehensive proteomic investigation of normal and diseased heart tissue
-
DOI 10.1016/j.jasms.2005.02.015, PII S1044030505001649
-
T. Kislinger, A.O. Gramolini, D.H. MacLennan, and A. Emili Multidimensional protein identification technology (MudPIT): technical overview of a profiling method optimized for the comprehensive proteomic investigation of normal and diseased heart tissue J. Am. Soc. Mass Spectrom. 16 2005 1207 1220 (Pubitemid 41059557)
-
(2005)
Journal of the American Society for Mass Spectrometry
, vol.16
, Issue.8
, pp. 1207-1220
-
-
Kislinger, T.1
Gramolini, A.O.2
MacLennan, D.H.3
Emili, A.4
-
5
-
-
33845566742
-
Mass spectrometry-based proteomic analysis of the epitope-tag affinity purified protein complexes in eukaryotes
-
I.F. Chang Mass spectrometry-based proteomic analysis of the epitope-tag affinity purified protein complexes in eukaryotes Proteomics 6 2006 6158 6166
-
(2006)
Proteomics
, vol.6
, pp. 6158-6166
-
-
Chang, I.F.1
-
6
-
-
34247642450
-
Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors
-
DOI 10.1073/pnas.0606379103
-
A.C. Paoletti, T.J. Parmely, C. Tomomori-Sato, S. Sato, D. Zhu, R.C. Conaway, J.W. Conaway, L. Florens, and M.P. Washburn Quantitative proteomic analysis of distinct mammalian mediator complexes using normalized spectral abundance factors Proc. Natl. Acad. Sci. USA 103 2006 18928 18933 (Pubitemid 350002805)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.50
, pp. 18928-18933
-
-
Paoletti, A.C.1
Parmely, T.J.2
Tomomori-Sato, C.3
Sato, S.4
Zhu, D.5
Conaway, R.C.6
Conaway, J.W.7
Florens, L.8
Washburn, M.P.9
-
7
-
-
40349092949
-
Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics
-
DOI 10.1073/pnas.0706983105
-
M.E. Sardiu, Y. Cai, J. Jin, S.K. Swanson, R.C. Conaway, J.W. Conaway, L. Florens, and M.P. Washburn Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics Proc. Natl. Acad. Sci. USA 105 2008 1454 1459 (Pubitemid 351346535)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.5
, pp. 1454-1459
-
-
Sardiu, M.E.1
Cai, Y.2
Jin, J.3
Swanson, S.K.4
Conaway, R.C.5
Conaway, J.W.6
Florens, L.7
Washburn, M.P.8
-
8
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
A.C. Gavin, P. Aloy, P. Grandi, R. Krause, M. Boesche, M. Marzioch, C. Rau, L.J. Jensen, S. Bastuck, B. Dümpelfeld, A. Edelmann, M.-A. Heurtier, V. Hoffman, C. Hoefert, K. Klein, M. Hudak, A.-M. Michon, M. Schelder, M. Schirle, M. Remor, T. Rudi, S. Hooper, A. Bauer, T. Bouwmeester, G. Casari, G. Drewes, G. Neubauer, J.M. Rick, B. Kuster, P. Bork, R.B. Russell, and G. Superti-Furga Proteome survey reveals modularity of the yeast cell machinery Nature 440 2006 631 636
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dümpelfeld, B.10
Edelmann, A.11
Heurtier, M.-A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.-M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
9
-
-
79959896639
-
Building protein-protein interaction networks with proteomic and informatics tools
-
M. Sardiu, and M. Washburn Building protein-protein interaction networks with proteomic and informatics tools J. Biol. Chem. 286 2011 23645 23651
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 23645-23651
-
-
Sardiu, M.1
Washburn, M.2
-
10
-
-
0040279506
-
The purification of coenzyme A by ion exchange chromatography
-
E.R. Stadtman, and A. Kornberg The purification of coenzyme A by ion exchange chromatography J. Biol. Chem. 203 1953 47 54
-
(1953)
J. Biol. Chem.
, vol.203
, pp. 47-54
-
-
Stadtman, E.R.1
Kornberg, A.2
-
11
-
-
0015591262
-
Hydrophobic chromatography: Use for purification of glycogen synthetase
-
S. Shaltiel, and Z. Er-El Hydrophobic chromatography: use for purification of glycogen synthetase Proc. Natl. Acad. Sci. USA 70 1973 778 781
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 778-781
-
-
Shaltiel, S.1
Er-El, Z.2
-
12
-
-
33748919316
-
Gel filtration: A method for desalting and group separation
-
J. Porath, and P. Flodin Gel filtration: a method for desalting and group separation Nature 183 1959 1657 1659
-
(1959)
Nature
, vol.183
, pp. 1657-1659
-
-
Porath, J.1
Flodin, P.2
-
13
-
-
0141539517
-
A critical review of the methods for cleavage of fusion proteins with thrombin and factor Xa
-
DOI 10.1016/S1046-5928(03)00168-2
-
R.J. Jenny, K.G. Mann, and R.L. Lundblad A critical review of the methods for cleavage of fusion proteins with thrombin and factor Xa Protein Expr. Purif. 31 2003 1 11 (Pubitemid 37207638)
-
(2003)
Protein Expression and Purification
, vol.31
, Issue.1
, pp. 1-11
-
-
Jenny, R.J.1
Mann, K.G.2
Lundblad, R.L.3
-
14
-
-
37349079205
-
Specific and efficient cleavage of fusion proteins by recombinant plum pox virus NIa protease
-
DOI 10.1016/j.pep.2007.10.008, PII S1046592807002501
-
N. Zheng, J. de J. Pérez, Z. Zhang, E. Domínguez, J.A. Garcia, Q. Xie, Specific and efficient cleavage of fusion proteins by recombinant plum pox virus NIa protease, Protein Expr. Purif. 57 (2008) 153-162. (Pubitemid 350296984)
-
(2008)
Protein Expression and Purification
, vol.57
, Issue.2
, pp. 153-162
-
-
Zheng, N.1
Perez, J.D.J.2
Zhang, Z.3
Dominguez, E.4
Garcia, J.A.5
Xie, Q.6
-
15
-
-
0018136078
-
Affinity chromatographic isolation of the periplasmic maltose binding protein of Escherichia coli
-
DOI 10.1016/0014-5793(78)80940-5
-
T. Ferenci, and U. Klotz Affinity chromatographic isolation of the periplasmic maltose binding protein of Escherichia coli FEBS Lett. 94 1978 213 217 (Pubitemid 9038309)
-
(1978)
FEBS Letters
, vol.94
, Issue.2
, pp. 213-217
-
-
Ferenci, T.1
Klotz, U.2
-
16
-
-
40649099110
-
Expression and purification of maltose-binding protein fusions
-
Chapter 16 Unit 16.6
-
P. Riggs, Expression and purification of maltose-binding protein fusions, Curr. Protoc. Mol. Biol. (2001) (Chapter 16 Unit 16.6).
-
(2001)
Curr. Protoc. Mol. Biol.
-
-
Riggs, P.1
-
17
-
-
15744372778
-
Comparison of affinity tags for protein purification
-
DOI 10.1016/j.pep.2005.01.019
-
J.J. Lichty, J.L. Malecki, H.D. Agnew, D.J. Michelson-Horowitz, and S. Tan Comparison of affinity tags for protein purification Protein Expr. Purif. 41 2005 98 105 (Pubitemid 40406368)
-
(2005)
Protein Expression and Purification
, vol.41
, Issue.1
, pp. 98-105
-
-
Lichty, J.J.1
Malecki, J.L.2
Agnew, H.D.3
Michelson-Horowitz, D.J.4
Tan, S.5
-
18
-
-
77249162697
-
Streamlined analysis schema for high-throughput identification of endogenous protein complexes
-
A. Malovannaya, Y. Li, Y. Bulynko, S.Y. Jung, Y. Wang, R.B. Lanz, B.W. O'Malley, and J. Qin Streamlined analysis schema for high-throughput identification of endogenous protein complexes Proc. Natl. Acad. Sci. USA 107 2010 2431 2436
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 2431-2436
-
-
Malovannaya, A.1
Li, Y.2
Bulynko, Y.3
Jung, S.Y.4
Wang, Y.5
Lanz, R.B.6
O'Malley, B.W.7
Qin, J.8
-
19
-
-
44049093832
-
Isolation of proteins and protein complexes by immunoprecipitation
-
B. Kaboord, and M. Perr Isolation of proteins and protein complexes by immunoprecipitation Methods Mol. Biol. 424 2008 349 364
-
(2008)
Methods Mol. Biol.
, vol.424
, pp. 349-364
-
-
Kaboord, B.1
Perr, M.2
-
20
-
-
84869091832
-
Protein purification flow charts
-
Chapter 1 Unit 1.3
-
R.K. Scopes, Protein purification flow charts, Curr. Protoc. Protein Sci. (2000) (Chapter 1 Unit 1.3).
-
(2000)
Curr. Protoc. Protein Sci.
-
-
Scopes, R.K.1
-
21
-
-
54949132514
-
The dark side of EGFP: Defective polyubiquitination
-
M. Baens, H. Noels, V. Broeckx, S. Hagens, S. Fevery, A.D. Billiau, H. Vankelecom, and P. Marynen The dark side of EGFP: defective polyubiquitination PloS One 1 2006 e54
-
(2006)
PloS One
, vol.1
, pp. 54
-
-
Baens, M.1
Noels, H.2
Broeckx, V.3
Hagens, S.4
Fevery, S.5
Billiau, A.D.6
Vankelecom, H.7
Marynen, P.8
-
22
-
-
0347362854
-
Unexpected Effects of Epitope and Chimeric Tags on Gonadotropin-Releasing Hormone Receptors: Implications for Understanding the Molecular Etiology of Hypogonadotropic Hypogonadism
-
DOI 10.1210/jc.2003-031047
-
S.P. Brothers, J.A. Janovick, and P.M. Conn Unexpected effects of epitope and chimeric tags on gonadotropin-releasing hormone receptors: implications for understanding the molecular etiology of hypogonadotropic hypogonadism J. Clin. Endocrinol. Metab. 88 2003 6107 6112 (Pubitemid 38033099)
-
(2003)
Journal of Clinical Endocrinology and Metabolism
, vol.88
, Issue.12
, pp. 6107-6112
-
-
Brothers, S.P.1
Janovick, J.A.2
Conn, P.M.3
-
23
-
-
33645703441
-
A tandem affinity tag for two-step purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking
-
C. Tagwerker, K. Flick, M. Cui, C. Guerrero, Y. Dou, B. Auer, P. Baldi, L. Huang, and P. Kaiser A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking Mol. Cell Proteomics 5 2006 737 748
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 737-748
-
-
Tagwerker, C.1
Flick, K.2
Cui, M.3
Guerrero, C.4
Dou, Y.5
Auer, B.6
Baldi, P.7
Huang, L.8
Kaiser, P.9
-
24
-
-
0027908939
-
Isolation, renaturation, and formation of disulfide bonds of eukaryotic proteins expressed in Escherichia coli as inclusion bodies
-
DOI 10.1002/bit.260410103
-
B. Fischer, I. Sumner, and P. Goodenough Isolation, renaturation, and formation of disulfide bonds of eukaryotic proteins expressed in Escherichia coli as inclusion bodies Biotechnol. Bioeng. 41 1993 3 13 (Pubitemid 23004914)
-
(1993)
Biotechnology and Bioengineering
, vol.41
, Issue.1
, pp. 3-13
-
-
Fischer, B.1
Sumner, I.2
Goodenough, P.3
-
25
-
-
72149124383
-
IKK phosphorylates Huntingtin and targets it for degradation by the proteasome and lysosome
-
L.M. Thompson, C.T. Aiken, L.S. Kaltenbach, N. Agrawal, K. Illes, A. Khoshnan, M. Martinez-Vincente, M. Arrasate, J.G. O'Rourke, H. Khashwji, T. Lukacsovich, Y.Z. Zhu, A.L. Lau, A. Massey, M.R. Hayden, S.O. Zeitlin, S. Finkbeiner, K.N. Green, F.M. LaFerla, G. Bates, L. Huang, P.H. Patterson, D.C. Lo, A.M. Cuervo, J.L. Marsh, and J.S. Steffan IKK phosphorylates Huntingtin and targets it for degradation by the proteasome and lysosome J. Cell Biol. 187 2009 1083 1099
-
(2009)
J. Cell Biol.
, vol.187
, pp. 1083-1099
-
-
Thompson, L.M.1
Aiken, C.T.2
Kaltenbach, L.S.3
Agrawal, N.4
Illes, K.5
Khoshnan, A.6
Martinez-Vincente, M.7
Arrasate, M.8
O'Rourke, J.G.9
Khashwji, H.10
Lukacsovich, T.11
Zhu, Y.Z.12
Lau, A.L.13
Massey, A.14
Hayden, M.R.15
Zeitlin, S.O.16
Finkbeiner, S.17
Green, K.N.18
Laferla, F.M.19
Bates, G.20
Huang, L.21
Patterson, P.H.22
Lo, D.C.23
Cuervo, A.M.24
Marsh, J.L.25
Steffan, J.S.26
more..
-
26
-
-
0032787876
-
Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused
-
R.B. Kapust, and D.S. Waugh Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused Protein Sci. 8 1999 1668 1674 (Pubitemid 29379949)
-
(1999)
Protein Science
, vol.8
, Issue.8
, pp. 1668-1674
-
-
Kapust, R.B.1
Waugh, D.S.2
-
27
-
-
0023714467
-
A short polypeptide marker sequence useful for recombinant protein identification and purification
-
T.P. Hopp, K.S. Prickett, V.L. Price, R.T. Libby, C.J. March, D. Pat Cerretti, D.L. Urdal, and P.J. Conlon A short polypeptide marker sequence useful for recombinant protein identification and purification Nat. Biotechnol. 6 1988 1204 1210
-
(1988)
Nat. Biotechnol.
, vol.6
, pp. 1204-1210
-
-
Hopp, T.P.1
Prickett, K.S.2
Price, V.L.3
Libby, R.T.4
March, C.J.5
Pat Cerretti, D.6
Urdal, D.L.7
Conlon, P.J.8
-
28
-
-
0035975859
-
The FLAG™ peptide, a versatile fusion tag for the purification of recombinant proteins
-
DOI 10.1016/S0165-022X(01)00213-5, PII S0165022X01002135
-
A. Einhauer, and A. Jungbauer The FLAG peptide, a versatile fusion tag for the purification of recombinant proteins J. Biochem. Biophys. Methods 49 2001 455 465 (Pubitemid 33022564)
-
(2001)
Journal of Biochemical and Biophysical Methods
, vol.49
, Issue.1-3
, pp. 455-465
-
-
Einhauer, A.1
Jungbauer, A.2
-
29
-
-
0030029527
-
Vectors for expression and secretion of FLAG epitope-tagged proteins in mammalian cells
-
R.G. Chubet, and B.L. Brizzard Vectors for expression and secretion of FLAG epitope-tagged proteins in mammalian cells BioTechniques 20 1996 136 141 (Pubitemid 26025526)
-
(1996)
BioTechniques
, vol.20
, Issue.1
, pp. 136-141
-
-
Chubet, R.G.1
Brizzard, B.L.2
-
30
-
-
45549091210
-
Epitope tagging of recombinant proteins
-
Chapter 5 Unit 5.8
-
B. Brizzard, R. Chubet, Epitope tagging of recombinant proteins, Curr. Protoc. Neurosci. (2001) (Chapter 5 Unit 5.8).
-
(2001)
Curr. Protoc. Neurosci.
-
-
Brizzard, B.1
Chubet, R.2
-
31
-
-
34247113782
-
Identification and characterization of a Schizosaccharomyces pombe RNA polymerase II elongation factor with similarity to the metazoan transcription factor ELL
-
DOI 10.1074/jbc.M610393200
-
C.A.S. Banks, S.E. Kong, H. Spahr, L. Florens, S. Martin-Brown, M.P. Washburn, J.W. Conaway, A. Mushegian, and R.C. Conaway Identification and characterization of a Schizosaccharomyces pombe RNA polymerase II elongation factor with similarity to the metazoan transcription factor ELL J. Biol. Chem. 282 2007 5761 5769 (Pubitemid 47093720)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.8
, pp. 5761-5769
-
-
Banks, C.A.S.1
Kong, S.E.2
Spahr, H.3
Florens, L.4
Martin-Brown, S.5
Washburn, M.P.6
Conaway, J.W.7
Mushegian, A.8
Conaway, R.C.9
-
32
-
-
79959735636
-
A cost-benefit analysis of multidimensional fractionation of affinity purification-mass spectrometry samples
-
W.H. Dunham, B. Larsen, S. Tate, B.G. Badillo, M. Goudreault, Y. Tehami, T. Kislinger, and A.C. Gingras A cost-benefit analysis of multidimensional fractionation of affinity purification-mass spectrometry samples Proteomics 11 2011 2603 2612
-
(2011)
Proteomics
, vol.11
, pp. 2603-2612
-
-
Dunham, W.H.1
Larsen, B.2
Tate, S.3
Badillo, B.G.4
Goudreault, M.5
Tehami, Y.6
Kislinger, T.7
Gingras, A.C.8
-
33
-
-
20244385811
-
The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes
-
DOI 10.1074/jbc.M500001200
-
Y. Cai, J. Jin, L. Florens, S.K. Swanson, T. Kusch, B. Li, J.L. Workman, M.P. Washburn, R.C. Conaway, and J.W. Conaway The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes J. Biol. Chem. 280 2005 13665 13670 (Pubitemid 40517261)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.14
, pp. 13665-13670
-
-
Cai, Y.1
Jin, J.2
Florens, L.3
Swanson, S.K.4
Kusch, T.5
Li, B.6
Workman, J.L.7
Washburn, M.P.8
Conaway, R.C.9
Conaway, J.W.10
-
34
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
DOI 10.1038/415180a
-
Y. Ho, A. Gruhler, A. Heilbut, G.D. Bader, L. Moore, S.-L. Adams, A. Millar, P. Taylor, K. Bennett, K. Boutilier, L. Yang, C. Wolting, I. Donaldson, S. Schandorff, J. Shewnarane, M. Vo, J. Taggart, M. Goudreault, B. Muskat, C. Alfarano, D. Dewar, Z. Lin, K. Michalickova, A.R. Willems, H. Sassi, P.A. Nielsen, K.J. Rasmussen, J.R. Andersen, L.E. Johansen, L.H. Hansen, H. Jespersen, A. Podtelejnikov, E. Nielsen, J. Crawford, V. Poulsen, B.D. Sorensen, J. Matthiesen, R.C. Hendrickson, F. Gleeson, T. Pawson, M.F. Moran, D. Durocher, M. Mann, C.W. Hogue, D. Figeys, and M. Tyers Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Nature 415 2002 180 183 (Pubitemid 34059520)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.-L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.V.44
Figeys, D.45
Tyers, M.46
more..
-
35
-
-
33947219266
-
Large-scale mapping of human protein-protein interactions by mass spectrometry
-
R.M. Ewing, P. Chu, F. Elisma, H. Li, P. Taylor, S. Climie, L. McBroom-Cerajewski, M.D. Robinson, L. O'Connor, M. Li, R. Taylor, M. Dharsee, Y. Ho, A. Heilbut, L. Moore, S. Zhang, O. Ornatsky, Y.V. Bukhman, M. Ethier, Y. Sheng, J. Vasilescu, M. Abu-Farha, J.P. Lambert, H.S. Duewel, I.I. Stewart, B. Kuehl, K. Hogue, K. Colwill, K. Gladwish, B. Muskat, R. Kinach, S.L. Adams, M.F. Moran, G.B. Morin, T. Topaloglou, and D. Figeys Large-scale mapping of human protein-protein interactions by mass spectrometry Mol. Syst. Biol. 3 2007 89
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 89
-
-
Ewing, R.M.1
Chu, P.2
Elisma, F.3
Li, H.4
Taylor, P.5
Climie, S.6
McBroom-Cerajewski, L.7
Robinson, M.D.8
O'Connor, L.9
Li, M.10
Taylor, R.11
Dharsee, M.12
Ho, Y.13
Heilbut, A.14
Moore, L.15
Zhang, S.16
Ornatsky, O.17
Bukhman, Y.V.18
Ethier, M.19
Sheng, Y.20
Vasilescu, J.21
Abu-Farha, M.22
Lambert, J.P.23
Duewel, H.S.24
Stewart, I.I.25
Kuehl, B.26
Hogue, K.27
Colwill, K.28
Gladwish, K.29
Muskat, B.30
Kinach, R.31
Adams, S.L.32
Moran, M.F.33
Morin, G.B.34
Topaloglou, T.35
Figeys, D.36
more..
-
36
-
-
0037225952
-
A general method for the covalent labeling of fusion proteins with small molecules in vivo
-
DOI 10.1038/nbt765
-
A. Keppler, S. Gendreizig, T. Gronemeyer, H. Pick, H. Vogel, and K. Johnsson A general method for the covalent labeling of fusion proteins with small molecules in vivo Nat. Biotechnol. 21 2003 86 89 (Pubitemid 36055833)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.1
, pp. 86-89
-
-
Keppler, A.1
Gendreizig, S.2
Gronemeyer, T.3
Pick, H.4
Vogel, H.5
Johnsson, K.6
-
37
-
-
34447272975
-
The HaloTag: A novel technology for cell imaging and protein analysis
-
G.V. Los, and K. Wood The HaloTag: a novel technology for cell imaging and protein analysis Methods Mol. Biol. 356 2007 195 208
-
(2007)
Methods Mol. Biol.
, vol.356
, pp. 195-208
-
-
Los, G.V.1
Wood, K.2
-
38
-
-
48049092838
-
HaloTag: A novel protein labeling technology for cell imaging and protein analysis
-
G.V. Los, L.P. Encell, M.G. Mcdougall, D.D. Hartzell, N. Karassina, C. Zimprich, M.G. Wood, R. Learish, R.F. Ohana, M. Urh, D. Simpson, J. Mendez, K. Zimmerman, P. Otto, G. Vidugiris, J. Zhu, A. Darzins, D.H. Klaubert, R.F. Bulleit, and K.V. Wood HaloTag: a novel protein labeling technology for cell imaging and protein analysis ACS Chem. Biol. 3 2008 373 382
-
(2008)
ACS Chem. Biol.
, vol.3
, pp. 373-382
-
-
Los, G.V.1
Encell, L.P.2
McDougall, M.G.3
Hartzell, D.D.4
Karassina, N.5
Zimprich, C.6
Wood, M.G.7
Learish, R.8
Ohana, R.F.9
Urh, M.10
Simpson, D.11
Mendez, J.12
Zimmerman, K.13
Otto, P.14
Vidugiris, G.15
Zhu, J.16
Darzins, A.17
Klaubert, D.H.18
Bulleit, R.F.19
Wood, K.V.20
more..
-
39
-
-
84856654953
-
Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics
-
D.L. Daniels, J. Méndez, A.L. Mosley, S.R. Ramisetty, N. Murphy, H. Benink, K.V. Wood, M. Urh, and M.P. Washburn Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics J. Proteome Res. 11 2012 564 575
-
(2012)
J. Proteome Res.
, vol.11
, pp. 564-575
-
-
Daniels, D.L.1
Méndez, J.2
Mosley, A.L.3
Ramisetty, S.R.4
Murphy, N.5
Benink, H.6
Wood, K.V.7
Urh, M.8
Washburn, M.P.9
-
40
-
-
0027499708
-
The random peptide library-assisted engineering of a C-terminal affinity peptide, useful for the detection and purification of a functional Ig Fv fragment
-
T.G.M. Schmidt, and A. Skerra The random peptide library-assisted engineering of a C-terminal affinity peptide, useful for the detection and purification of a functional Ig Fv fragment Protein Eng. 6 1993 109 122 (Pubitemid 23048948)
-
(1993)
Protein Engineering
, vol.6
, Issue.1
, pp. 109-122
-
-
Schmidt, T.G.M.1
Skerra, A.2
-
41
-
-
0033814033
-
Use of the Strep-tag and streptavidin for detection and purification of recombinant proteins
-
A. Skerra, and T.G.M. Schmidt Use of the Strep-tag and streptavidin for detection and purification of recombinant proteins Methods Enzymol. 326 2000 271 304
-
(2000)
Methods Enzymol.
, vol.326
, pp. 271-304
-
-
Skerra, A.1
Schmidt, T.G.M.2
-
42
-
-
0029865819
-
Molecular interaction between the Strep-tag affinity peptide and its cognate target, streptavidin
-
T.G. Schmidt, J. Koepke, R. Frank, and A. Skerra Molecular interaction between the Strep-tag affinity peptide and its cognate target, streptavidin J. Mol. Biol. 255 1996 753 766
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 753-766
-
-
Schmidt, T.G.1
Koepke, J.2
Frank, R.3
Skerra, A.4
-
43
-
-
17044415362
-
Single-step Strep-tag purification for the isolation and identification of protein complexes from mammalian cells
-
M.R. Junttila, S. Saarinen, T. Schmidt, J. Kast, and J. Westermarck Single-step Strep-tag purification for the isolation and identification of protein complexes from mammalian cells Proteomics 5 2005 1199 1203
-
(2005)
Proteomics
, vol.5
, pp. 1199-1203
-
-
Junttila, M.R.1
Saarinen, S.2
Schmidt, T.3
Kast, J.4
Westermarck, J.5
-
44
-
-
0035543198
-
One-step purification of recombinant proteins using a nanomolar-affinity streptavidin-binding peptide, the SBP-tag
-
DOI 10.1006/prep.2001.1515
-
A.D. Keefe, D.S. Wilson, B. Seelig, and J.W. Szostak One-step purification of recombinant proteins using a nanomolar-affinity streptavidin-binding peptide, the SBP-Tag Protein Expr. Purif. 23 2001 440 446 (Pubitemid 34067367)
-
(2001)
Protein Expression and Purification
, vol.23
, Issue.3
, pp. 440-446
-
-
Keefe, A.D.1
Wilson, D.S.2
Seelig, B.3
Szostak, J.W.4
-
45
-
-
0347597739
-
The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins
-
DOI 10.1016/j.pep.2003.08.014
-
T. Lamla, and V.A. Erdmann The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins Protein Expr. Purif. 33 2004 39 47 (Pubitemid 38069813)
-
(2004)
Protein Expression and Purification
, vol.33
, Issue.1
, pp. 39-47
-
-
Lamla, T.1
Erdmann, V.A.2
-
46
-
-
0032006484
-
Solubility of proteins isolated from inclusion bodies is enhanced by fusion to maltose-binding protein or thioredoxin
-
DOI 10.1006/prep.1997.0826
-
D. Sachdev, and J.M. Chirgwin Solubility of proteins isolated from inclusion bodies is enhanced by fusion to maltose-binding protein or thioredoxin Protein Expr. Purif. 12 1998 122 132 (Pubitemid 28361978)
-
(1998)
Protein Expression and Purification
, vol.12
, Issue.1
, pp. 122-132
-
-
Sachdev, D.1
Chirgwin, J.M.2
-
47
-
-
0024215242
-
An Escherichia coli vector to express and purify foreign proteins by fusion to and separation from maltose-binding protein
-
DOI 10.1016/0378-1119(88)90170-9
-
C.V. Mania, P.D. Riggs, A.G. Grandea III, B.E. Slatko, L.S. Moran, J.A. Tagliamonte, L.A. McReynolds, and C. Guan An Escherichia coli vector to express and purify foreign proteins by fusion to and separation from maltose-binding protein Gene 74 1988 365 373 (Pubitemid 19060651)
-
(1988)
Gene
, vol.74
, Issue.2
, pp. 365-373
-
-
Maina, C.V.1
Riggs, P.D.2
Grandea III, A.G.3
Slatko, B.E.4
Moran, L.S.5
Tagliamonte, J.A.6
McReynolds, L.A.7
Guan, C.8
-
48
-
-
0037068447
-
Comprehensive proteomic analysis of the human spliceosome
-
DOI 10.1038/nature01031
-
Z. Zhou, L.J. Licklider, S.P. Gygi, and R. Reed Comprehensive proteomic analysis of the human spliceosome Nature 419 2002 182 185 (Pubitemid 35025448)
-
(2002)
Nature
, vol.419
, Issue.6903
, pp. 182-185
-
-
Zhou, Z.1
Licklider, L.J.2
Gygi, S.P.3
Reed, R.4
-
49
-
-
0033636518
-
Functional association of U2 snRNP with the ATP-independent spliceosomal complex e
-
R. Das, Z. Zhou, and R. Reed Functional association of U2 snRNP with the ATP-independent spliceosomal complex E Mol. Cell 5 2000 779 787
-
(2000)
Mol. Cell
, vol.5
, pp. 779-787
-
-
Das, R.1
Zhou, Z.2
Reed, R.3
-
50
-
-
0022340978
-
Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product
-
G.I. Evan, G.K. Lewis, G. Ramsay, and J.M. Bishop Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product Mol. Cell. Biol. 5 1985 3610 3616 (Pubitemid 16233068)
-
(1985)
Molecular and Cellular Biology
, vol.5
, Issue.12
, pp. 3610-3616
-
-
Evan, G.I.1
Lewis, G.K.2
Ramsay, G.3
Bishop, J.M.4
-
51
-
-
0035067367
-
Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly
-
DOI 10.1038/35070067
-
J.H. Seol, A. Shevchenko, A. Shevchenko, and R.J. Deshaies Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly Nat. Cell Biol. 3 2001 384 391 (Pubitemid 32288446)
-
(2001)
Nature Cell Biology
, vol.3
, Issue.4
, pp. 384-391
-
-
Seol, J.H.1
Shevchenko, A.2
Shevchenko, A.3
Deshaies, R.J.4
-
52
-
-
0025815340
-
Secretion in yeast: Purification and in vitro translocation of chemical amounts of prepro-α-factor
-
G.L. Bush, A.M. Tassin, H. Friden, and D.I. Meyer Secretion in yeast. Purification and in vitro translocation of chemical amounts of prepro-alpha-factor J. Biol. Chem. 266 1991 13811 13814 (Pubitemid 21907424)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.21
, pp. 13811-13814
-
-
Bush, G.L.1
Tassin, A.-M.2
Friden, H.3
Meyer, D.I.4
-
53
-
-
0016717761
-
Metal chelate affinity chromatography, a new approach to protein fractionation
-
J. Porath, J. Carlsson, I. Olsson, and G. Belfrage Metal chelate affinity chromatography, a new approach to protein fractionation Nature 258 1975 598 599
-
(1975)
Nature
, vol.258
, pp. 598-599
-
-
Porath, J.1
Carlsson, J.2
Olsson, I.3
Belfrage, G.4
-
54
-
-
71549166323
-
Immobilized-metal affinity chromatography (IMAC): A review
-
H. Block, B. Maertens, A. Spriestersbach, N. Brinker, J. Kubicek, R. Fabis, J. Labahn, and F. Schäfer Immobilized-metal affinity chromatography (IMAC): a review Methods Enzymol. 463 2009 439 473
-
(2009)
Methods Enzymol.
, vol.463
, pp. 439-473
-
-
Block, H.1
Maertens, B.2
Spriestersbach, A.3
Brinker, N.4
Kubicek, J.5
Fabis, R.6
Labahn, J.7
Schäfer, F.8
-
55
-
-
44949249096
-
Metal chelate affinity chromatography
-
Chapter 9 Unit 9.4
-
K.J. Petty, Metal chelate affinity chromatography, Curr. Protoc. Protein Sci. (2001) (Chapter 9 Unit 9.4).
-
(2001)
Curr. Protoc. Protein Sci.
-
-
Petty, K.J.1
-
56
-
-
79961189743
-
Method for suppressing non-specific protein interactions observed with affinity resins
-
J.S. Rees, and K.S. Lilley Method for suppressing non-specific protein interactions observed with affinity resins Methods 54 2011 407 412
-
(2011)
Methods
, vol.54
, pp. 407-412
-
-
Rees, J.S.1
Lilley, K.S.2
-
57
-
-
70449354972
-
Avoiding nonspecific interactions in studies of the plasma proteome: Practical solutions to prevention of nonspecific interactions for label-free detection of low-abundance plasma proteins
-
J.L. Richens, E.A.M. Lunt, D. Sanger, G. McKenzie, and P. O'Shea Avoiding nonspecific interactions in studies of the plasma proteome: practical solutions to prevention of nonspecific interactions for label-free detection of low-abundance plasma proteins J. Proteome Res. 8 2009 5103 5110
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5103-5110
-
-
Richens, J.L.1
Lunt, E.A.M.2
Sanger, D.3
McKenzie, G.4
O'Shea, P.5
-
58
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
DOI 10.1038/13732
-
G. Rigaut, A. Shevchenko, B. Rutz, M. Wilm, M. Mann, and B. Séraphin A generic protein purification method for protein complex characterization and proteome exploration Nat. Biotechnol. 17 1999 1030 1032 (Pubitemid 29474865)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
59
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
DOI 10.1006/meth.2001.1183
-
O. Puig, F. Caspary, G. Rigaut, B. Rutz, E. Bouveret, E. Bragado-Nilsson, M. Wilm, and B. Séraphin The tandem affinity purification (TAP) method: a general procedure of protein complex purification Methods 24 2001 218 229 (Pubitemid 32846428)
-
(2001)
Methods
, vol.24
, Issue.3
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
60
-
-
1842430185
-
Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants
-
DOI 10.1111/j.1365-313X.2004.02031.x
-
J.S. Rohila, M. Chen, R. Cerny, and M.E. Fromm Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants Plant J. 38 2004 172 181 (Pubitemid 38448454)
-
(2004)
Plant Journal
, vol.38
, Issue.1
, pp. 172-181
-
-
Rohila, J.S.1
Chen, M.2
Cerny, R.3
Fromm, M.E.4
-
61
-
-
2342461648
-
Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast
-
DOI 10.1074/mcp.M300099-MCP200
-
J. Graumann, L.A. Dunipace, J.H. Seol, W.H. McDonald, J.R. Yates, B.J. Wold, and R.J. Deshaies Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast Mol. Cell Proteomics 3 2004 226 237 (Pubitemid 38714278)
-
(2004)
Molecular and Cellular Proteomics
, vol.3
, Issue.3
, pp. 226-237
-
-
Graumann, J.1
Dunipace, L.A.2
Seol, J.H.3
McDonald, W.H.4
Yates III, J.R.5
Wold, B.J.6
Deshaies, R.J.7
-
62
-
-
33751211249
-
An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
-
DOI 10.1038/nmeth968, PII NMETH968
-
T. Burckstummer, K.L. Bennett, A. Preradovic, G. Schutze, O. Hantschel, G. Superti-Furga, and A. Bauch An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells Nat. Methods 3 2006 1013 1019 (Pubitemid 44782701)
-
(2006)
Nature Methods
, vol.3
, Issue.12
, pp. 1013-1019
-
-
Burckstummer, T.1
Bennett, K.L.2
Preradovic, A.3
Schutze, G.4
Hantschel, O.5
Superti-Furga, G.6
Bauch, A.7
-
63
-
-
37048999786
-
A novel tandem affinity purification strategy for the efficient isolation and characterisation of native protein complexes
-
DOI 10.1002/pmic.200700038
-
C.J. Gloeckner, K. Boldt, A. Schumacher, R. Roepman, and M. Ueffing A novel tandem affinity purification strategy for the efficient isolation and characterisation of native protein complexes Proteomics 7 2007 4228 4234 (Pubitemid 350250468)
-
(2007)
Proteomics
, vol.7
, Issue.23
, pp. 4228-4234
-
-
Gloeckner, C.J.1
Boldt, K.2
Schumacher, A.3
Roepman, R.4
Ueffing, M.5
-
64
-
-
58549085778
-
An integrated workflow for charting the human interaction proteome: Insights into the PP2A system
-
T. Glatter, A. Wepf, R. Aebersold, and M. Gstaiger An integrated workflow for charting the human interaction proteome: insights into the PP2A system Mol. Syst. Biol. 5 2009 237
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 237
-
-
Glatter, T.1
Wepf, A.2
Aebersold, R.3
Gstaiger, M.4
-
65
-
-
70350161473
-
Identification of FANCA interacting proteins in mammalian cells using tandem affinity purification and mass spectrometry
-
S.L. Conner, and M. Wang Identification of FANCA interacting proteins in mammalian cells using tandem affinity purification and mass spectrometry Scientific Res. Essays 3 2008 143 153
-
(2008)
Scientific Res. Essays
, vol.3
, pp. 143-153
-
-
Conner, S.L.1
Wang, M.2
-
66
-
-
78650780078
-
Highly efficient purification of protein complexes from mammalian cells using a novel streptavidin-binding peptide and hexahistidine tandem tag system: Application to Bruton's tyrosine kinase
-
Y. Li, S. Franklin, M.J. Zhang, and T.M. Vondriska Highly efficient purification of protein complexes from mammalian cells using a novel streptavidin-binding peptide and hexahistidine tandem tag system: application to Bruton's tyrosine kinase Protein Sci. 20 2011 140 149
-
(2011)
Protein Sci.
, vol.20
, pp. 140-149
-
-
Li, Y.1
Franklin, S.2
Zhang, M.J.3
Vondriska, T.M.4
-
67
-
-
33644670152
-
An integrated mass spectrometry-based proteomic approach: Quantitave analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network
-
DOI 10.1074/mcp.M500303-MCP200
-
C. Guerrero, C. Tagwerker, P. Kaiser, and L. Huang An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network Mol. Cell. Proteomics 5 2006 366 378 (Pubitemid 43329314)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.2
, pp. 366-378
-
-
Guerrero, C.1
Tagwerker, C.2
Kaiser, P.3
Huang, L.4
-
68
-
-
20344365363
-
Measuring ubiquitin conjugation in cells
-
E.G. Mimnaugh, and L.M. Neckers Measuring ubiquitin conjugation in cells Methods Mol. Biol. 301 2005 223 241
-
(2005)
Methods Mol. Biol.
, vol.301
, pp. 223-241
-
-
Mimnaugh, E.G.1
Neckers, L.M.2
-
69
-
-
4444281106
-
Sequential Peptide Affinity (SPA) system for the identification of mammalian and bacterial protein complexes
-
DOI 10.1021/pr034084x
-
M. Zeghouf, J. Li, G. Butland, A. Borkowska, V. Canadien, D. Richards, B. Beattie, A. Emili, and J.F. Greenblatt Sequential peptide affinity (SPA) system for the identification of mammalian and bacterial protein complexes J. Proteome Res. 3 2004 463 468 (Pubitemid 39207350)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.3
, pp. 463-468
-
-
Zeghouf, M.1
Li, J.2
Butland, G.3
Borkowska, A.4
Canadien, V.5
Richards, D.6
Beattie, B.7
Emili, A.8
Greenblatt, J.F.9
-
70
-
-
70349768564
-
Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli
-
M. Babu, G. Butland, O. Pogoutse, J. Li, J.F. Greenblatt, and A. Emili Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli Methods Mol. Biol. 564 2009 373 400
-
(2009)
Methods Mol. Biol.
, vol.564
, pp. 373-400
-
-
Babu, M.1
Butland, G.2
Pogoutse, O.3
Li, J.4
Greenblatt, J.F.5
Emili, A.6
-
71
-
-
26944490411
-
A combined approach for the localization and tandem affinity purification of protein complexes from metazoans
-
I.M. Cheeseman, A. Desai, A combined approach for the localization and tandem affinity purification of protein complexes from metazoans, Sci. STKE 2005 (2005) p. l1.
-
(2005)
Sci. STKE
, vol.2005
-
-
Cheeseman, I.M.1
Desai, A.2
-
72
-
-
66449111040
-
High-throughput generation of tagged stable cell lines for proteomic analysis
-
J.Z. Torres, J.J. Miller, and P.K. Jackson High-throughput generation of tagged stable cell lines for proteomic analysis Proteomics 9 2009 2888 2891
-
(2009)
Proteomics
, vol.9
, pp. 2888-2891
-
-
Torres, J.Z.1
Miller, J.J.2
Jackson, P.K.3
-
73
-
-
33746500659
-
Proteomic analysis by multidimensional protein identification technology
-
L. Florens, and M.P. Washburn Proteomic analysis by multidimensional protein identification technology Methods Mol. Biol. 328 2006 159 175
-
(2006)
Methods Mol. Biol.
, vol.328
, pp. 159-175
-
-
Florens, L.1
Washburn, M.P.2
-
74
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
DOI 10.1021/ac010617e
-
D.A. Wolters, M.P. Washburn, and J.R. Yates III An automated multidimensional protein identification technology for shotgun proteomics Anal. Chem. 73 2001 5683 5690 (Pubitemid 33126725)
-
(2001)
Analytical Chemistry
, vol.73
, Issue.23
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates III, J.R.3
-
75
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
J.K. Eng, A.L. McCormack, and J.R. Yates III An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 5 1994 976 989
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates Iii, J.R.3
-
77
-
-
79952300022
-
A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision
-
N. Colaert, J. Vandekerckhove, K. Gevaert, and L. Martens A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision Proteomics 11 2011 1110 1113
-
(2011)
Proteomics
, vol.11
, pp. 1110-1113
-
-
Colaert, N.1
Vandekerckhove, J.2
Gevaert, K.3
Martens, L.4
-
78
-
-
33748319353
-
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
-
DOI 10.1021/pr060161n
-
B. Zybailov, A.L. Mosley, M.E. Sardiu, M.K. Coleman, L. Florens, and M. Washburn Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae J. Proteome Res. 5 2006 2339 2347 (Pubitemid 44330827)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.9
, pp. 2339-2347
-
-
Zybailov, B.1
Mosley, A.L.2
Sardiu, M.E.3
Coleman, M.K.4
Florens, L.5
Washburn, M.P.6
-
79
-
-
62349120127
-
Generation and analysis of multidimensional protein identification technology datasets
-
S. Swanson, and L. Florens Generation and analysis of multidimensional protein identification technology datasets Methods Mol. Biol. 492 2009 1 20
-
(2009)
Methods Mol. Biol.
, vol.492
, pp. 1-20
-
-
Swanson, S.1
Florens, L.2
-
80
-
-
79955417151
-
Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides
-
B.Q. Tran, C. Hernandez, P. Waridel, A. Potts, J. Barblan, F. Lisacek, and M. Quadroni Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides J. Proteome Res. 10 2011 800 811
-
(2011)
J. Proteome Res.
, vol.10
, pp. 800-811
-
-
Tran, B.Q.1
Hernandez, C.2
Waridel, P.3
Potts, A.4
Barblan, J.5
Lisacek, F.6
Quadroni, M.7
-
81
-
-
36448962323
-
MudPIT: Multidimensional protein identification technology
-
DOI 10.2144/000112604
-
C.M. Delahunty, and J.R. Yates III MudPIT: multidimensional protein identification technology Biotechniques 43 2007 563 569 (Pubitemid 350174904)
-
(2007)
BioTechniques
, vol.43
, Issue.5
, pp. 563-569
-
-
Delahunty, C.M.1
Yates III, J.R.2
-
82
-
-
0029685702
-
Analytical properties of the nanoelectrospray ion source
-
M. Wilm, and M. Mann Analytical properties of the nanoelectrospray ion source Anal. Chem. 68 1996 1 8
-
(1996)
Anal. Chem.
, vol.68
, pp. 1-8
-
-
Wilm, M.1
Mann, M.2
-
83
-
-
70350507226
-
Electrospray: From ions in solution to ions in the gas phase, what we know now
-
P. Kebarle, and U.H. Verkerk Electrospray: from ions in solution to ions in the gas phase, what we know now Mass Spectrom. Rev. 28 2009 898 917
-
(2009)
Mass Spectrom. Rev.
, vol.28
, pp. 898-917
-
-
Kebarle, P.1
Verkerk, U.H.2
-
85
-
-
0033926938
-
A brief overview of the present status of the mechanisms involved in electrospray mass spectrometry
-
DOI 10.1002/1096-9888(200007)35:7<804::AID-JMS22>3.0.CO;2-Q
-
P. Kebarle A brief overview of the present status of the mechanisms involved in electrospray mass spectrometry J. Mass Spectrom. 35 2000 804 817 (Pubitemid 30479522)
-
(2000)
Journal of Mass Spectrometry
, vol.35
, Issue.7
, pp. 804-817
-
-
Kebarle, P.1
-
86
-
-
0034487744
-
Mechanistic investigation of ionization suppression in electrospray ionization
-
DOI 10.1016/S1044-0305(00)00163-X, PII S104403050000163X
-
R. King, R. Bonfiglio, C. Fernandez-Metzler, C. Miller-Stein, and T. Olah Mechanistic investigation of ionization suppression in electrospray ionization J. Am. Soc. Mass Spectrom. 11 2000 942 950 (Pubitemid 34546664)
-
(2000)
Journal of the American Society for Mass Spectrometry
, vol.11
, Issue.11
, pp. 942-950
-
-
King, R.1
Bonfiglio, R.2
Fernandez-Metzler, C.3
Miller-Stein, C.4
Olah, T.5
-
88
-
-
84869093237
-
-
Thermo Electron Corporation Technical Publications, Thermo Electron Corporation, San Jose
-
Thermo Electron Corporation, Finnigan LTQ hardware manual revision B, Technical Publications, Thermo Electron Corporation, San Jose, 2005.
-
(2005)
Finnigan LTQ Hardware Manual Revision B
-
-
-
89
-
-
0041408938
-
Electrostatic axially harmonic orbital trapping: A high-performance technique of mass analysis
-
DOI 10.1021/ac991131p
-
A. Makarov Electrostatic axially harmonic orbital trapping: a high-performance technique of mass analysis Anal. Chem. 72 2000 1156 1162 (Pubitemid 30163769)
-
(2000)
Analytical Chemistry
, vol.72
, Issue.6
, pp. 1156-1162
-
-
Makarov, A.1
-
90
-
-
33645654439
-
Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer
-
A. Makarov, E. Denisov, A. Kholomeev, W. Balschun, O. Lange, K. Strupat, and S. Horning Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer Anal. Chem. 78 2006 2113 2120
-
(2006)
Anal. Chem.
, vol.78
, pp. 2113-2120
-
-
Makarov, A.1
Denisov, E.2
Kholomeev, A.3
Balschun, W.4
Lange, O.5
Strupat, K.6
Horning, S.7
-
91
-
-
75149144996
-
A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
-
J.V. Olsen, J.C. Schwartz, J. Griep-Raming, M.L. Nielsen, E. Damoc, E. Denisov, O. Lange, P. Remes, D. Taylor, M. Splendore, E.R. Wouters, M. Senko, A. Makarov, M. Mann, and S. Horning A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed Mol. Cell. Proteomics 8 2009 2759 2769
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2759-2769
-
-
Olsen, J.V.1
Schwartz, J.C.2
Griep-Raming, J.3
Nielsen, M.L.4
Damoc, E.5
Denisov, E.6
Lange, O.7
Remes, P.8
Taylor, D.9
Splendore, M.10
Wouters, E.R.11
Senko, M.12
Makarov, A.13
Mann, M.14
Horning, S.15
-
92
-
-
84869092838
-
Mass spectrometric techniques
-
K. Wilson, J. Walker (Eds.) 5th ed., Cambridge University Press
-
K. Wilson, J. Walker, Mass spectrometric techniques, in: K. Wilson, J. Walker (Eds.), Principles and Techniques of Biochemistry and Molecular Biology, 5th ed., Cambridge University Press, 2000, pp. 527-579.
-
(2000)
Principles and Techniques of Biochemistry and Molecular Biology
, pp. 527-579
-
-
Wilson, K.1
Walker, J.2
-
93
-
-
68049085754
-
Effect of dynamic exclusion duration on spectral count based quantitative proteomics
-
Y. Zhang, Z. Wen, M.P. Washburn, and L. Florens Effect of dynamic exclusion duration on spectral count based quantitative proteomics Anal. Chem. 81 2009 6317 6326
-
(2009)
Anal. Chem.
, vol.81
, pp. 6317-6326
-
-
Zhang, Y.1
Wen, Z.2
Washburn, M.P.3
Florens, L.4
-
94
-
-
18744398125
-
Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book
-
R.G. Sadygov, D. Cociorva, and J.R. Yates III Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book Nat. Methods 1 2004 195 202
-
(2004)
Nat. Methods
, vol.1
, pp. 195-202
-
-
Sadygov, R.G.1
Cociorva, D.2
Yates Iii, J.R.3
-
95
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
D.N. Perkins, D.J. Pappin, D.M. Creasy, and J.S. Cottrell Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 1999 3551 3567 (Pubitemid 30007252)
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
96
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
DOI 10.1093/bioinformatics/bth092
-
R. Craig, and R.C. Beavis TANDEM: matching proteins with tandem mass spectra Bioinformatics 20 2004 1466 1467 (Pubitemid 38931421)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
97
-
-
7044246160
-
Open mass spectrometry search algorithm
-
DOI 10.1021/pr0499491
-
L.Y. Geer, S.P. Markey, J.A. Kowalak, L. Wagner, M. Xu, D.M. Maynard, X. Yang, W. Shi, and S.H. Bryant Open mass spectrometry search algorithm J. Proteome Res. 3 2004 958 964 (Pubitemid 39425651)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.5
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
98
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
P. Roepstorff, and J. Fohlman Proposal for a common nomenclature for sequence ions in mass spectra of peptides Biomed. Mass Spectrom. 11 1984 601
-
(1984)
Biomed. Mass Spectrom.
, vol.11
, pp. 601
-
-
Roepstorff, P.1
Fohlman, J.2
-
99
-
-
0025617140
-
Appendix 5. Nomenclature for peptide fragment ions (positive ions)
-
K. Biemann, Appendix 5. Nomenclature for peptide fragment ions (positive ions), Methods in Enzymol. 193 (1990) 886-887.
-
(1990)
Methods in Enzymol.
, vol.193
, pp. 886-887
-
-
Biemann, K.1
-
100
-
-
0036393898
-
DTASelect and contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
D.L. Tabb, W.H. McDonald, and J.R. Yates III DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics J. Proteome Res. 1 2002 21 26
-
(2002)
J. Proteome Res.
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates Iii, J.R.3
-
101
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
DOI 10.1074/mcp.M500061-MCP200
-
Y. Ishihama, Y. Oda, T. Tabata, T. Sato, T. Nagasu, J. Rappsilber, and M. Mann Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein Mol. Cell. Prot. 4 2005 1265 1272 (Pubitemid 41448714)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.9
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
Rappsilber, J.6
Mann, M.7
-
102
-
-
74049132731
-
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
-
N.M. Griffin, J. Yu, F. Long, P. Oh, S. Shore, Y. Li, J.A. Koziol, and J.E. Schnitzer Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis Nat. Biotechnol. 28 2010 83 89
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 83-89
-
-
Griffin, N.M.1
Yu, J.2
Long, F.3
Oh, P.4
Shore, S.5
Li, Y.6
Koziol, J.A.7
Schnitzer, J.E.8
-
103
-
-
3543005925
-
Cluster analysis of mass spectrometry data reveals a novel component of SAGA
-
DOI 10.1128/MCB.24.16.7249-7259.2004
-
D. Powell, C. Weaver, J.L. Jennings, K.J. McAfee, Y. He, P.A. Weil, and A. Link Cluster analysis of mass spectrometry data reveals a novel component of SAGA Mol. Cell. Biol. 24 2004 7249 7259 (Pubitemid 39014450)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.16
, pp. 7249-7259
-
-
Powell, D.W.1
Weaver, C.M.2
Jennings, J.L.3
McAfee, K.J.4
He, Y.5
Weil, P.A.6
Link, A.J.7
-
104
-
-
34247614401
-
Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors
-
DOI 10.1039/b701483j
-
B.L. Zybailov, L. Florens, and M.P. Washburn Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors Mol. Biosyst. 3 2007 354 360 (Pubitemid 46674865)
-
(2007)
Molecular BioSystems
, vol.3
, Issue.5
, pp. 354-360
-
-
Zybailov, B.L.1
Florens, L.2
Washburn, M.P.3
-
105
-
-
77949795829
-
Refinements to label free proteome quantitation: How to deal with peptides shared by multiple proteins
-
Y. Zhang, Z. Wen, M.P. Washburn, and L. Florens Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins Anal. Chem. 82 2010 2272 2281
-
(2010)
Anal. Chem.
, vol.82
, pp. 2272-2281
-
-
Zhang, Y.1
Wen, Z.2
Washburn, M.P.3
Florens, L.4
-
106
-
-
20044383907
-
The mammalian Mediator complex
-
DOI 10.1016/j.febslet.2004.11.031
-
J.W. Conaway, L. Florens, S. Sato, C. Tomomori-Sato, T.J. Parmely, T. Yao, S.K. Swanson, C.A. Banks, M.P. Washburn, and R.C. Conaway The mammalian mediator complex FEBS Lett. 579 2005 904 908 (Pubitemid 40361863)
-
(2005)
FEBS Letters
, vol.579
, Issue.4 SPEC. ISS.
, pp. 904-908
-
-
Conaway, J.W.1
Florens, L.2
Sato, S.3
Tomomori-Sato, C.4
Parmely, T.J.5
Yao, T.6
Swanson, S.K.7
Banks, C.A.S.8
Washburn, M.P.9
Conaway, R.C.10
-
107
-
-
67049118963
-
Evaluation of clustering algorithms for protein complex and protein interaction network assembly
-
M.E. Sardiu, L. Florens, and M.P. Washburn Evaluation of clustering algorithms for protein complex and protein interaction network assembly J. Proteome Res. 8 2009 2944 2952
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2944-2952
-
-
Sardiu, M.E.1
Florens, L.2
Washburn, M.P.3
-
108
-
-
77049113847
-
Crude subcellular fractionation of cultured mammalian cell lines
-
P. Holden, and W.A. Horton Crude subcellular fractionation of cultured mammalian cell lines BMC Res. Notes 2 2009 243
-
(2009)
BMC Res. Notes
, vol.2
, pp. 243
-
-
Holden, P.1
Horton, W.A.2
-
109
-
-
0038561131
-
A method for the comprehensive proteomic analysis of membrane proteins
-
DOI 10.1038/nbt819
-
C.C. Wu, M.J. MacCoss, K.E. Howell, and J.R. Yates III A method for the comprehensive proteomic analysis of membrane proteins Nat. Biotechnol. 21 2003 532 538 (Pubitemid 36532018)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.5
, pp. 532-538
-
-
Wu, C.C.1
MacCoss, M.J.2
Howell, K.E.3
Yates III, J.R.4
-
110
-
-
35748955884
-
Studies of the specificity of deoxyribonuclease i
-
S. Vanecko, and M. Laskowski Studies of the specificity of deoxyribonuclease I J. Biol. Chem. 236 1961 3312 3316
-
(1961)
J. Biol. Chem.
, vol.236
, pp. 3312-3316
-
-
Vanecko, S.1
Laskowski, M.2
-
111
-
-
0038574979
-
Ion suppression in mass spectrometry
-
DOI 10.1373/49.7.1041
-
T.M. Annesley Ion suppression in mass spectrometry Clin. Chem. 49 2003 1041 1044 (Pubitemid 36751088)
-
(2003)
Clinical Chemistry
, vol.49
, Issue.7
, pp. 1041-1044
-
-
Annesley, T.M.1
-
112
-
-
34047166974
-
Affinity chromatography: A useful tool in proteomics studies
-
DOI 10.1016/j.jchromb.2006.10.056, PII S1570023206008877
-
M. Azarkan, J. Huet, D. Baeyens-Volant, Y. Looze, and G. Vandenbussche Affinity chromatography: a useful tool in proteomics studies J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 849 2007 81 90 (Pubitemid 46529319)
-
(2007)
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences
, vol.849
, Issue.1-2
, pp. 81-90
-
-
Azarkan, M.1
Huet, J.2
Baeyens-Volant, D.3
Looze, Y.4
Vandenbussche, G.5
-
113
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
DOI 10.1038/85686
-
M.P. Washburn, D. Wolters, and J.R. Yates III Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat. Biotechnol. 19 2001 242 247 (Pubitemid 32220565)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates, J.R.3
-
115
-
-
8444238235
-
S-peptide epitope tagging for protein purification, expression monitoring, and localization in mammalian cells
-
J.S. Hackbarth, S.-H. Lee, X.W. Meng, B.T. Vroman, S.H. Kaufmann, and L.M. Karnitz S-peptide epitope tagging for protein purification, expression monitoring, and localization in mammalian cells Biotechniques 37 2004 835 839 (Pubitemid 39488463)
-
(2004)
BioTechniques
, vol.37
, Issue.5
, pp. 835-839
-
-
Hackbarth, J.S.1
Lee, S.-H.2
Meng, X.W.3
Vroman, B.T.4
Kaufmann, S.H.5
Karnitz, L.M.6
|