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Volumn 55, Issue 11, 2012, Pages 5536-5545

Discovery of selective LRRK2 inhibitors guided by computational analysis and molecular modeling

Author keywords

[No Author keywords available]

Indexed keywords

LEUCINE RICH REPEAT KINASE 2; LEUCINE RICH REPEAT KINASE 2 INHIBITOR; PROTEIN SERINE THREONINE KINASE INHIBITOR; PYRIMIDINE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 84862274036     PISSN: 00222623     EISSN: 15204804     Source Type: Journal    
DOI: 10.1021/jm300452p     Document Type: Article
Times cited : (74)

References (64)
  • 1
    • 66949152096 scopus 로고    scopus 로고
    • Parkinson's disease
    • Lees, A. J.; Hardy, J.; Revesz, T. Parkinson's disease Lancet 2009, 373, 2055-2066
    • (2009) Lancet , vol.373 , pp. 2055-2066
    • Lees, A.J.1    Hardy, J.2    Revesz, T.3
  • 2
    • 69149097771 scopus 로고    scopus 로고
    • Erratum in.
    • Erratum in Lancet 2009, 374, 684.
    • (2009) Lancet , vol.374 , pp. 684
  • 5
    • 77952122496 scopus 로고    scopus 로고
    • LRRK2 and Parkinson disease
    • Dachsel, J. C.; Farrer, M. J. LRRK2 and Parkinson disease Arch. Neurol. 2010, 67, 542-547
    • (2010) Arch. Neurol. , vol.67 , pp. 542-547
    • Dachsel, J.C.1    Farrer, M.J.2
  • 9
    • 77953395313 scopus 로고    scopus 로고
    • Leucine-rich repeat kinase 2 mutations and Parkinson's disease: Three questions
    • Greggio, E.; Cookson, M. R. Leucine-rich repeat kinase 2 mutations and Parkinson's disease: three questions ASN Neuro 2009, 1 (e00002) 13-24
    • (2009) ASN Neuro , vol.1 , Issue.E00002 , pp. 13-24
    • Greggio, E.1    Cookson, M.R.2
  • 10
    • 65549124540 scopus 로고    scopus 로고
    • Leucine-rich repeat kinase 2 (LRRK2): A key player in the pathogenesis of Parkinson's disease
    • Gandhi, P. N.; Chen, S. G.; Wilson-Delfosse, A. L. Leucine-rich repeat kinase 2 (LRRK2): a key player in the pathogenesis of Parkinson's disease J. Neurosci. Res. 2009, 87, 1283-1295
    • (2009) J. Neurosci. Res. , vol.87 , pp. 1283-1295
    • Gandhi, P.N.1    Chen, S.G.2    Wilson-Delfosse, A.L.3
  • 11
    • 81555205691 scopus 로고    scopus 로고
    • Leucine-rich repeat kinase 2 (LRRK2) cellular biology: A review of recent advances in identifying physiological substrates and cellular functions
    • Drolet, R. E.; Sanders, J. M.; Kern, J. T. Leucine-rich repeat kinase 2 (LRRK2) cellular biology: a review of recent advances in identifying physiological substrates and cellular functions J. Neurogenet. 2011, 25, 140-151
    • (2011) J. Neurogenet. , vol.25 , pp. 140-151
    • Drolet, R.E.1    Sanders, J.M.2    Kern, J.T.3
  • 14
    • 78649389313 scopus 로고    scopus 로고
    • The role of leucine-rich repeat kinase 2 (LRRK2) in Parkinson's disease
    • Cookson, M. R. The role of leucine-rich repeat kinase 2 (LRRK2) in Parkinson's disease Nat. Rev. Neurosci. 2010, 11, 791-797
    • (2010) Nat. Rev. Neurosci. , vol.11 , pp. 791-797
    • Cookson, M.R.1
  • 15
    • 84857285604 scopus 로고    scopus 로고
    • Is inhibition of kinase activity the only therapeutic strategy for LRRK2-associated Parkinson's disease?
    • Rudenko, I. N.; Chia, R.; Cookson, M. R. Is inhibition of kinase activity the only therapeutic strategy for LRRK2-associated Parkinson's disease? BMC Med. 2012, 10, 20-27
    • (2012) BMC Med. , vol.10 , pp. 20-27
    • Rudenko, I.N.1    Chia, R.2    Cookson, M.R.3
  • 16
    • 80053152848 scopus 로고    scopus 로고
    • Inhibitors of LRRK2 kinase attenuate neurodegeneration and Parkinson-like phenotypes in Caenorhabditis elegans and Drosophila Parkinson's disease models
    • Liu, Z.; Hamamichi, S.; Lee, B. D.; Yang, D.; Ray, A.; Caldwell, G. A.; Caldwell, K. A.; Dawson, T. M.; Smith, W. W.; Dawson, V. L. Inhibitors of LRRK2 kinase attenuate neurodegeneration and Parkinson-like phenotypes in Caenorhabditis elegans and Drosophila Parkinson's disease models Hum. Mol. Genet. 2011, 20, 3933-3942
    • (2011) Hum. Mol. Genet. , vol.20 , pp. 3933-3942
    • Liu, Z.1    Hamamichi, S.2    Lee, B.D.3    Yang, D.4    Ray, A.5    Caldwell, G.A.6    Caldwell, K.A.7    Dawson, T.M.8    Smith, W.W.9    Dawson, V.L.10
  • 22
    • 84858791638 scopus 로고    scopus 로고
    • Small molecule kinase inhibitors for LRRK2 and their application to parkinson's disease models
    • Kramer, T.; Lo Monte, F.; Goering, S.; Okala Amombo, G. M.; Schmidt, B. Small molecule kinase inhibitors for LRRK2 and their application to parkinson's disease models ACS Chem. Neurosci. 2012, 3, 151-160
    • (2012) ACS Chem. Neurosci. , vol.3 , pp. 151-160
    • Kramer, T.1    Lo Monte, F.2    Goering, S.3    Okala Amombo, G.M.4    Schmidt, B.5
  • 23
    • 77950640166 scopus 로고    scopus 로고
    • Differential effects of divalent manganese and magnesium on the kinase activity of leucine-rich repeat kinase 2 (LRRK2)
    • Lovitt, B; Vanderporten, E. C.; Sheng, Z.; Zhu, H.; Drummond, J.; Liu, Y. Differential effects of divalent manganese and magnesium on the kinase activity of leucine-rich repeat kinase 2 (LRRK2) Biochemistry 2010, 49, 3092-3100
    • (2010) Biochemistry , vol.49 , pp. 3092-3100
    • Lovitt, B.1    Vanderporten, E.C.2    Sheng, Z.3    Zhu, H.4    Drummond, J.5    Liu, Y.6
  • 24
    • 77953675980 scopus 로고    scopus 로고
    • Moving beyond rules: The development of a central nervous system multiparameter optimization (CNS MPO) approach to enable alignment of druglike properties
    • Wager, T. T.; Hou, X.; Verhoest, P. R.; Villalobos, A. Moving beyond rules: the development of a central nervous system multiparameter optimization (CNS MPO) approach to enable alignment of druglike properties ACS Chem. Neurosci. 2010, 1, 435-449
    • (2010) ACS Chem. Neurosci. , vol.1 , pp. 435-449
    • Wager, T.T.1    Hou, X.2    Verhoest, P.R.3    Villalobos, A.4
  • 25
    • 1942453243 scopus 로고    scopus 로고
    • Ligand efficiency: A useful metric for lead selection
    • Hopkins, A. L.; Groom, C. R.; Alex, A. Ligand efficiency: a useful metric for lead selection Drug Discovery Today 2004, 9, 430-431
    • (2004) Drug Discovery Today , vol.9 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2    Alex, A.3
  • 26
    • 35748934487 scopus 로고    scopus 로고
    • The influence of drug-like concepts on decision-making in medicinal chemistry
    • Leeson, P. D.; Springthorpe, B. The influence of drug-like concepts on decision-making in medicinal chemistry Nat. Rev. Drug Discovery 2007, 6, 881-890
    • (2007) Nat. Rev. Drug Discovery , vol.6 , pp. 881-890
    • Leeson, P.D.1    Springthorpe, B.2
  • 27
    • 78649280204 scopus 로고    scopus 로고
    • An analysis of the diaminopyrimidine patent estates describing spleen tyrosine kinase inhibitors by Rigel and Portola
    • Moore, W. J.; Richard, D.; Thorarensen, A. An analysis of the diaminopyrimidine patent estates describing spleen tyrosine kinase inhibitors by Rigel and Portola Expert Opin. Ther. Pat. 2010, 20, 1703-1722
    • (2010) Expert Opin. Ther. Pat. , vol.20 , pp. 1703-1722
    • Moore, W.J.1    Richard, D.2    Thorarensen, A.3
  • 28
    • 40349101849 scopus 로고    scopus 로고
    • Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase
    • Deng, J.; Lewis, P. A.; Greggio, E.; Sluch, E.; Beilina, A.; Cookson, M. R. Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 1499-1504
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 1499-1504
    • Deng, J.1    Lewis, P.A.2    Greggio, E.3    Sluch, E.4    Beilina, A.5    Cookson, M.R.6
  • 29
    • 33750931271 scopus 로고    scopus 로고
    • The Parkinson disease gene LRRK2: Evolutionary and structural insights
    • Marín, I. The Parkinson disease gene LRRK2: evolutionary and structural insights Mol. Biol. Evol. 2006, 23, 2423-2433
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2423-2433
    • Marín, I.1
  • 31
    • 80054979896 scopus 로고    scopus 로고
    • Kinetic, mechanistic, and structural modeling studies of truncated wild-type leucine-rich repeat kinase 2 and the G2019S mutant
    • Liu, M.; Kang, S.; Ray, S.; Jackson, J.; Zaitsev, A. D.; Gerber, S. A.; Cuny, G. D.; Glicksman, M. A. Kinetic, mechanistic, and structural modeling studies of truncated wild-type leucine-rich repeat kinase 2 and the G2019S mutant Biochemistry 2011, 50, 9399-9408
    • (2011) Biochemistry , vol.50 , pp. 9399-9408
    • Liu, M.1    Kang, S.2    Ray, S.3    Jackson, J.4    Zaitsev, A.D.5    Gerber, S.A.6    Cuny, G.D.7    Glicksman, M.A.8
  • 32
    • 67649518035 scopus 로고    scopus 로고
    • Homology modeling in drug discovery: Current trends and applications
    • Cavasotto, C. N.; Phatak, S. S. Homology modeling in drug discovery: current trends and applications Drug Discovery Today 2009, 14, 676-683
    • (2009) Drug Discovery Today , vol.14 , pp. 676-683
    • Cavasotto, C.N.1    Phatak, S.S.2
  • 33
    • 71249140665 scopus 로고    scopus 로고
    • Protein structure prediction in structure-based ligand design and virtual screening
    • Grant, M. A. Protein structure prediction in structure-based ligand design and virtual screening Comb. Chem. High Throughput Screening 2009, 12, 940-960
    • (2009) Comb. Chem. High Throughput Screening , vol.12 , pp. 940-960
    • Grant, M.A.1
  • 34
    • 79960009157 scopus 로고    scopus 로고
    • Homology models in docking and high-throughput docking
    • Cavasotto, C. N. Homology models in docking and high-throughput docking Curr. Top. Med. Chem. 2011, 11, 1528-1534
    • (2011) Curr. Top. Med. Chem. , vol.11 , pp. 1528-1534
    • Cavasotto, C.N.1
  • 37
    • 84862288871 scopus 로고    scopus 로고
    • version 2009.10; Chemical Computing Group Inc. Montreal, Canada.
    • MOE, version 2009.10; Chemical Computing Group Inc.: Montreal, Canada.
    • MOE
  • 39
    • 57749185024 scopus 로고    scopus 로고
    • Identification of compounds that inhibit the kinase activity of leucine-rich repeat kinase 2
    • Covy, J. P.; Giasson, B. I. Identification of compounds that inhibit the kinase activity of leucine-rich repeat kinase 2 Biochem. Biophys. Res. Commun. 2009, 378, 473-477
    • (2009) Biochem. Biophys. Res. Commun. , vol.378 , pp. 473-477
    • Covy, J.P.1    Giasson, B.I.2
  • 40
    • 84862283762 scopus 로고    scopus 로고
    • Schrödinger, Inc. New York.
    • Maestro; Schrödinger, Inc.: New York, 2009.
    • (2009) Maestro
  • 41
    • 0035990910 scopus 로고    scopus 로고
    • Designing specific protein kinase inhibitors: Insights from computer simulations and comparative sequence/structure analysis
    • Gould, C.; Wong, C. F. Designing specific protein kinase inhibitors: insights from computer simulations and comparative sequence/structure analysis Pharmacol. Ther. 2002, 93, 169-178
    • (2002) Pharmacol. Ther. , vol.93 , pp. 169-178
    • Gould, C.1    Wong, C.F.2
  • 42
    • 57649131066 scopus 로고    scopus 로고
    • Prediction of specificity-determining residues for small-molecule kinase inhibitors
    • Caffrey, D. R.; Lunney, E. A.; Moshinsky, D. J. Prediction of specificity-determining residues for small-molecule kinase inhibitors BMC Bioinf. 2008, 9, 491-505
    • (2008) BMC Bioinf. , vol.9 , pp. 491-505
    • Caffrey, D.R.1    Lunney, E.A.2    Moshinsky, D.J.3
  • 43
    • 77950473958 scopus 로고    scopus 로고
    • Kinase selectivity potential for inhibitors targeting the ATP binding site: A network analysis
    • Huang, D.; Zhou, T.; Lafleur, K.; Nevado, C.; Caflisch, A. Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis Bioinformatics 2010, 26, 198-204
    • (2010) Bioinformatics , vol.26 , pp. 198-204
    • Huang, D.1    Zhou, T.2    Lafleur, K.3    Nevado, C.4    Caflisch, A.5
  • 45
    • 80052015102 scopus 로고    scopus 로고
    • Profile-QSAR: A novel meta-QSAR method that combines activities across the kinase family to accurately predict affinity, selectivity, and cellular activity
    • Martin, E.; Mukherjee, P.; Sullivan, D.; Jansen, J. Profile-QSAR: a novel meta-QSAR method that combines activities across the kinase family to accurately predict affinity, selectivity, and cellular activity J. Chem. Inf. Model. 2011, 51, 1942-1956
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1942-1956
    • Martin, E.1    Mukherjee, P.2    Sullivan, D.3    Jansen, J.4
  • 48
    • 32244443107 scopus 로고    scopus 로고
    • LRRK1 protein kinase activity is stimulated upon binding of GTP to its Roc domain
    • Korr, D.; Toschi, L.; Donner, P.; Pohlenz, H. D.; Kreft, B.; Weiss, B. LRRK1 protein kinase activity is stimulated upon binding of GTP to its Roc domain Cell. Signalling 2006, 18, 910-920
    • (2006) Cell. Signalling , vol.18 , pp. 910-920
    • Korr, D.1    Toschi, L.2    Donner, P.3    Pohlenz, H.D.4    Kreft, B.5    Weiss, B.6
  • 52
    • 84857380650 scopus 로고    scopus 로고
    • Rational approaches to improving selectivity in drug design
    • Huggins, D. J.; Sherman, W.; Tidor, B. Rational approaches to improving selectivity in drug design J. Med. Chem. 2012, 55, 1424-1444
    • (2012) J. Med. Chem. , vol.55 , pp. 1424-1444
    • Huggins, D.J.1    Sherman, W.2    Tidor, B.3
  • 53
    • 33750976700 scopus 로고    scopus 로고
    • Matched molecular pairs as a guide in the optimization of pharmaceutical properties; A study of aqueous solubility, plasma protein binding and oral exposure
    • Leach, A. G.; Jones, H. D.; Cosgrove, D. A.; Kenny, P. W.; Ruston, L.; MacFaul, P.; Wood, J. M.; Colclough, N.; Law, B. Matched molecular pairs as a guide in the optimization of pharmaceutical properties; a study of aqueous solubility, plasma protein binding and oral exposure J. Med. Chem. 2006, 49, 6672-6682
    • (2006) J. Med. Chem. , vol.49 , pp. 6672-6682
    • Leach, A.G.1    Jones, H.D.2    Cosgrove, D.A.3    Kenny, P.W.4    Ruston, L.5    MacFaul, P.6    Wood, J.M.7    Colclough, N.8    Law, B.9
  • 54
    • 36148989137 scopus 로고    scopus 로고
    • SAR index: Quantifying the nature of structure-activity relationships
    • Peltason, L.; Bajorath, J. SAR index: quantifying the nature of structure-activity relationships J. Med. Chem. 2007, 50, 5571-5578
    • (2007) J. Med. Chem. , vol.50 , pp. 5571-5578
    • Peltason, L.1    Bajorath, J.2
  • 55
    • 78049415439 scopus 로고    scopus 로고
    • Chemical substitutions that introduce activity cliffs across different compound classes and biological targets
    • Wassermann, A. M.; Bajorath, J. Chemical substitutions that introduce activity cliffs across different compound classes and biological targets J. Chem. Inf. Model. 2010, 50, 1248-1256
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1248-1256
    • Wassermann, A.M.1    Bajorath, J.2
  • 56
    • 79952118736 scopus 로고    scopus 로고
    • Computational analysis of activity and selectivity cliffs
    • Peltason, L.; Bajorath, J. Computational analysis of activity and selectivity cliffs Methods Mol. Biol. 2011, 672, 119-132
    • (2011) Methods Mol. Biol. , vol.672 , pp. 119-132
    • Peltason, L.1    Bajorath, J.2
  • 57
    • 81555204763 scopus 로고    scopus 로고
    • Matched molecular pairs as a medicinal chemistry tool
    • Griffen, E.; Leach, A. G.; Robb, G. R.; Warner, D. J. Matched molecular pairs as a medicinal chemistry tool J. Med. Chem. 2011, 54, 7739-7750
    • (2011) J. Med. Chem. , vol.54 , pp. 7739-7750
    • Griffen, E.1    Leach, A.G.2    Robb, G.R.3    Warner, D.J.4
  • 58
    • 80052080825 scopus 로고    scopus 로고
    • From activity cliffs to target-specific scoring models and pharmacophore hypotheses
    • Seebeck, B.; Wagener, M.; Rarey, M. From activity cliffs to target-specific scoring models and pharmacophore hypotheses ChemMedChem 2011, 6, 1630-1639
    • (2011) ChemMedChem , vol.6 , pp. 1630-1639
    • Seebeck, B.1    Wagener, M.2    Rarey, M.3
  • 59
    • 33748896303 scopus 로고    scopus 로고
    • Expression and function of multidrug resistance transporters at the blood-brain barriers
    • Scherrmann, J. M. Expression and function of multidrug resistance transporters at the blood-brain barriers Expert Opin. Drug Metab. Toxicol. 2005, 1, 233-246
    • (2005) Expert Opin. Drug Metab. Toxicol. , vol.1 , pp. 233-246
    • Scherrmann, J.M.1
  • 60
    • 0033526176 scopus 로고    scopus 로고
    • P-Glycoprotein, a gatekeeper in the blood-brain barrier
    • Schinkel, A. H. P-Glycoprotein, a gatekeeper in the blood-brain barrier Adv. Drug Delivery Rev. 1999, 36, 179-194
    • (1999) Adv. Drug Delivery Rev. , vol.36 , pp. 179-194
    • Schinkel, A.H.1
  • 61
    • 0001398008 scopus 로고    scopus 로고
    • How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
    • Wang, J.; Cieplak, P.; Kollman, P. A. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 2000, 21, 1049-1074
    • (2000) J. Comput. Chem. , vol.21 , pp. 1049-1074
    • Wang, J.1    Cieplak, P.2    Kollman, P.A.3
  • 62
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J. D.; Higgins, D. G.; Gibson, T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice Nucleic Acids Res. 1994, 22, 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 63
    • 33646855259 scopus 로고    scopus 로고
    • version 7.5; Accelrys Inc. San Diego, CA.
    • Pipeline Pilot, version 7.5; Accelrys Inc.: San Diego, CA.
    • Pipeline Pilot
  • 64
    • 77952772341 scopus 로고    scopus 로고
    • Extended-connectivity fingerprints
    • Rogers, D.; Hahn, M. Extended-connectivity fingerprints J. Chem. Inf. Model. 2010, 50, 742-754
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 742-754
    • Rogers, D.1    Hahn, M.2


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