-
1
-
-
0000257294
-
Insertion sequences revisited
-
Craig N, Craigie R, Gellert M, Lambowitz A (ed.) ASM Press, Washington, DC
-
Chandler M, Mahillon J, (2002) Insertion sequences revisited. In: Craig N, Craigie R, Gellert M, Lambowitz A (ed.), Mobile DNA, vol. 2. ASM Press, Washington, DC
-
(2002)
Mobile DNA
, vol.2
-
-
Chandler, M..1
Mahillon, J.2
-
2
-
-
12344323970
-
New insertion sequences of Sulfolobus: Functional properties and implications for genome evolution in hyperthermophilic archaea
-
DOI 10.1111/j.1365-2958.2004.04391.x
-
Blount Z, Grogan D, (2005) New insertion sequences of Sulfolobus: functional properties and implications for genome evolution in hyperthermophilic archaea. Mol Microbiol 55:312-325 (Pubitemid 40127905)
-
(2005)
Molecular Microbiology
, vol.55
, Issue.1
, pp. 312-325
-
-
Blount, Z.D.1
Grogan, D.W.2
-
3
-
-
33644899969
-
Periodic extinctions of transposable elements in bacterial lineages: Evidence from intragenomic variation in multiple genomes
-
Wagner A, (2006) Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomes. Mol Biol Evol 23:723-733
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 723-733
-
-
Wagner, A.1
-
4
-
-
33644873699
-
ISfi nder: The reference centre for bacterial insertion sequences
-
Siguier P, et al (2006) ISfi nder: the reference centre for bacterial insertion sequences. Nucl Acids Res 34:D32-D36
-
(2006)
Nucl. Acids. Res.
, vol.34
-
-
Siguier, P.1
-
5
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
DOI 10.1038/36786
-
Kunst F, et al (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390:249-256 (Pubitemid 27513299)
-
(1997)
Nature
, vol.390
, Issue.6657
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
Bertero, M.G.7
Bessieres, P.8
Bolotin, A.9
Borchert, S.10
Borriss, R.11
Boursier, L.12
Brans, A.13
Braun, M.14
Brignell, S.C.15
Bron, S.16
Brouillet, S.17
Bruschi, C.V.18
Caldwell, B.19
Capuano, V.20
Carter, N.M.21
Choi, S.-K.22
Codani, J.-J.23
Connerton, I.F.24
Cummings, N.J.25
Daniel, R.A.26
Denizot, F.27
Devine, K.M.28
Dusterhoft, A.29
Ehrlich, S.D.30
Emmerson, P.T.31
Entian, K.D.32
Errington, J.33
Fabret, C.34
Ferrari, E.35
Foulger, D.36
Fritz, C.37
Fujita, M.38
Fujita, Y.39
Fuma, S.40
Galizzi, A.41
Galleron, N.42
Ghim, S.-Y.43
Glaser, P.44
Goffeau, A.45
Golightly, E.J.46
Grandi, G.47
Guiseppi, G.48
Guy, B.J.49
Haga, K.50
Haiech, J.51
Harwood, C.R.52
Henaut, A.53
Hilbert, H.54
Holsappel, S.55
Hosono, S.56
Hullo, M.-F.57
Itaya, M.58
Jones, L.59
Joris, B.60
Karamata, D.61
Kasahara, Y.62
Klaerr-Blanchard, M.63
Klein, C.64
Kobayashi, Y.65
Koetter, P.66
Koningstein, G.67
Krogh, S.68
Kumano, M.69
Kurita, K.70
Lapidus, A.71
Lardinois, S.72
Lauber, J.73
Lazarevic, V.74
Lee, S.-M.75
Levine, A.76
Liu, H.77
Masuda, S.78
Mauel, C.79
Medigue, C.80
Medina, N.81
Mellado, R.P.82
Mizuno, M.83
Moestl, D.84
Nakai, S.85
Noback, M.86
Noone, D.87
O'Reilly, M.88
Ogawa, K.89
Ogiwara, A.90
Oudega, B.91
Park, S.-H.92
Parro, V.93
Pohl, T.M.94
Portetelle, D.95
Porwollik, S.96
Prescott, A.M.97
Presecan, E.98
Pujic, P.99
more..
-
7
-
-
56449107747
-
Tn7 elements: Engendering diversity from chromosomes to episomes
-
Parks A, Peters J, (2009) Tn7 elements: engendering diversity from chromosomes to episomes. Plasmid 61:1-14
-
(2009)
Plasmid.
, vol.61
, pp. 1-14
-
-
Parks, A.1
Peters, J.2
-
8
-
-
58549097483
-
Transposon tn5 annu
-
Reznikoff W, (2008) Transposon Tn5. Annu Rev Genet 42:269-286
-
(2008)
Rev. Genet.
, vol.42
, pp. 269-286
-
-
Reznikoff, W.1
-
9
-
-
84860140367
-
Transposition of phage
-
Mu DNA. Craig N, Craigie R, Gellert M, Lambowitz A (edASM Press, Washington, DC
-
Chaconas G, Harshey R, (2002) Transposition of phage Mu DNA. Craig N, Craigie R, Gellert M, Lambowitz A (ed.), Mobile DNA, vol. 2. ASM Press, Washington, DC
-
(2002)
, Mobile DNA
, vol.2
-
-
Chaconas, G.1
Harshey, R.2
-
10
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham E, (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41:331-368
-
(2007)
Annu. Rev. Genet.
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.2
-
12
-
-
33846939973
-
Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
-
DOI 10.1016/j.gene.2006.08.008, PII S0378111906005373
-
Pritham E, Putliwala T, Feschotte C, (2007) Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene 390:3-17 (Pubitemid 46241741)
-
(2007)
Gene
, vol.390
, Issue.1-2
, pp. 3-17
-
-
Pritham, E.J.1
Putliwala, T.2
Feschotte, C.3
-
13
-
-
33749522239
-
Genetics: Junk DNA as an evolutionary force
-
DOI 10.1038/443521a, PII 443521A
-
Biémont C, Vieira C, (2006) Genetics: junk DNA as an evolutionary force. Nature 443:521-524 (Pubitemid 44527281)
-
(2006)
Nature
, vol.443
, Issue.7111
, pp. 521-524
-
-
Biemont, C.1
Vieira, C.2
-
15
-
-
34047240364
-
Causes of insertion sequences abundance in prokaryotic genomes
-
DOI 10.1093/molbev/msm014
-
Touchon M, Rocha E, (2007) Causes of insertion sequences abundance in prokaryotic genomes. Mol Biol Evol 24:969-981 (Pubitemid 46536707)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.4
, pp. 969-981
-
-
Touchon, M.1
Rocha, E.P.C.2
-
16
-
-
21044452598
-
Cyanidioschyzon merolae genome. A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes
-
DOI 10.1104/pp.104.053991
-
Misumi O, et al (2005) Cyanidioschyzon merolae genome. A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes. Plant Physiol 137:567-585 (Pubitemid 43126686)
-
(2005)
Plant Physiology
, vol.137
, Issue.2
, pp. 567-585
-
-
Misumi, O.1
Matsuzaki, M.2
Nozaki, H.3
Miyagishima, S.-Y.4
Mori, T.5
Nishida, K.6
Yagisawa, F.7
Yoshida, Y.8
Kuroiwa, H.9
Kuroiwa, T.10
-
17
-
-
7744238311
-
The genome of Cryptosporidium hominis
-
DOI 10.1038/nature02977
-
Xu P, et al (2004) The genome of Cryptosporidium hominis. Nature 431: 1107-1112 (Pubitemid 39472235)
-
(2004)
Nature
, vol.431
, Issue.7012
, pp. 1107-1112
-
-
Xu, P.1
Widmer, G.2
Wang, Y.3
Ozaki, L.S.4
Alves, J.M.5
Serrano, M.G.6
Pulu, D.7
Manque, P.8
Akiyoshi, D.9
Mackey, A.J.10
Pearson, W.R.11
Dear, P.H.12
Bankler, A.T.13
Peterson, D.L.14
Abrahamsen, M.S.15
Kapur, V.16
Tzipori, S.17
Buck, G.A.18
-
18
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
Lander E, et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921 (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
-
19
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
DOI 10.1038/nature01262
-
Waterston R, et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562 (Pubitemid 35477048)
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
Antonarakis, S.E.11
Attwood, J.12
Baertsch, R.13
Bailey, J.14
Barlow, K.15
Beck, S.16
Berry, E.17
Birren, B.18
Bloom, T.19
Bork, P.20
Botcherby, M.21
Bray, N.22
Brent, M.R.23
Brown, D.G.24
Brown, S.D.25
Bult, C.26
Burton, J.27
Butler, J.28
Campbell, R.D.29
Carninci, P.30
Cawley, S.31
Chiaromonte, F.32
Chinwalla, A.T.33
Church, D.M.34
Clamp, M.35
Clee, C.36
Collins, F.S.37
Cook, L.L.38
Copley, R.R.39
Coulson, A.40
Couronne, O.41
Cuff, J.42
Curwen, V.43
Cutts, T.44
Daly, M.45
David, R.46
Davies, J.47
Delehaunty, K.D.48
Deri, J.49
Dermitzakis, E.T.50
Dewey, C.51
Dickens, N.J.52
Diekhans, M.53
Dodge, S.54
Dubchak, I.55
Dunn, D.M.56
Eddy, S.R.57
Elnitski, L.58
Emes, R.D.59
Eswara, P.60
Eyras, E.61
Felsenfeld, A.62
Fewell, G.A.63
Flicek, P.64
Foley, K.65
Frankel, W.N.66
Fulton, L.A.67
Fulton, R.S.68
Furey, T.S.69
Gage, D.70
Gibbs, R.A.71
Glusman, G.72
Gnerre, S.73
Goldman, N.74
Goodstadt, L.75
Grafham, D.76
Graves, T.A.77
Green, E.D.78
Gregory, S.79
Guigo, R.80
Guyer, M.81
Hardison, R.C.82
Haussler, D.83
Hayashizaki, Y.84
Hillier, L.W.85
Hinrichs, A.86
Hlavina, W.87
Holzer, T.88
Hsu, F.89
Hua, A.90
Hubbard, T.91
Hunt, A.92
Jackson, I.93
Jaffe, D.B.94
Steven Johnson, L.95
Jones, M.96
Jones, T.A.97
Joy, A.98
Kamal, M.99
more..
-
20
-
-
34248512741
-
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
-
DOI 10.1101/gr.6070707
-
Gentles A, et al (2007) Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res 17:992-1004 (Pubitemid 47026346)
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 992-1004
-
-
Gentles, A.J.1
Wakefield, M.J.2
Kohany, O.3
Gu, W.4
Batzer, M.A.5
Pollock, D.D.6
Jurka, J.7
-
21
-
-
77955273950
-
Rfaut triptych of the evolution of plant transposable elements
-
Tenaillon M, Hollister J, Gaut B (2010)A triptych of the evolution of plant transposable elements. Trends Plant Sci 15: 471-478
-
(2010)
Trends Plant. Sci.
, vol.15
, pp. 471-478
-
-
Tenaillon, M.1
Hollister, J.2
Gaut, B.3
-
22
-
-
77952844078
-
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates
-
Sela N, Kim E, Ast G. (2010) The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates. Genome Biol 11:R59
-
(2010)
Genome Biol.
, vol.11
-
-
Sela, N.1
Kim, E.2
Ast, G.3
-
23
-
-
69249205498
-
Transposable elements and factors infl uencing their success in eukaryotes
-
Pritham E, (2009) Transposable elements and factors infl uencing their success in eukaryotes. J Hered 100:648-655
-
(2009)
J. Hered.
, vol.100
, pp. 648-655
-
-
Pritham, E.1
-
24
-
-
33749389724
-
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
-
DOI 10.1101/gr.5282906
-
Hawkins J, et al (2006) Differential lineagespecifi c amplifi cation of transposable elements is responsible for genome size variation in Gossypium. Genome Res 16:1252-1261 (Pubitemid 44506958)
-
(2006)
Genome Research
, vol.16
, Issue.10
, pp. 1252-1261
-
-
Hawkins, J.S.1
Kim, H.2
Nason, J.D.3
Wing, R.A.4
Wendel, J.F.5
-
25
-
-
33749392949
-
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
DOI 10.1101/gr.5290206
-
Piegu B, et al (2006) Doubling genome size without polyploidization: dynamics of retrotransposition- driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16:1262-1269 (Pubitemid 44506959)
-
(2006)
Genome Research
, vol.16
, Issue.10
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Saniyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
Panaud, O.11
-
26
-
-
0038363536
-
CACTA transposons in triticeae. A diverse family of high-copy repetitive elements
-
DOI 10.1104/pp.102.015743
-
Wicker T, et al (2003) CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements. Plant Physiol 132:52-63 (Pubitemid 36590401)
-
(2003)
Plant Physiology
, vol.132
, Issue.1
, pp. 52-63
-
-
Wicker, T.1
Guyot, R.2
Yahiaoui, N.3
Keller, B.4
-
27
-
-
34147105638
-
The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
-
DOI 10.1101/gr.5826307
-
Pace J, Feschotte C, (2007) The evolutionary history of human DNA transposons: evidence for intense activity in the primate ineage. Genome Res 17:422-432 (Pubitemid 46556446)
-
(2007)
Genome Research
, vol.17
, Issue.4
, pp. 422-432
-
-
Pace II, J.K.1
Feschotte, C.2
-
28
-
-
0036250001
-
Plant transposable elements: Where genetics meets genomics
-
DOI 10.1038/nrg793
-
Feschotte C, Jiang N, Wessler S, (2002) Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3:329-341 (Pubitemid 34506715)
-
(2002)
Nature Reviews Genetics
, vol.3
, Issue.5
, pp. 329-341
-
-
Feschotte, C.1
Jiang, N.2
Wessler, S.R.3
-
29
-
-
58449137410
-
The Sorghum bicolor genome and the diversifi cation of grasses
-
Paterson A, et al (2009) The Sorghum bicolor genome and the diversifi cation of grasses. Nature 457:51-556
-
(2009)
Nature.
, vol.457
, pp. 51-556
-
-
Paterson, A.1
-
30
-
-
54249135347
-
A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice Oryza sativa ssp. Japonica
-
Oki N, et al (2008) A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica. Genes Genet Syst 83:321-329
-
(2008)
Genes. Genet. Syst.
, vol.83
, pp. 321-329
-
-
Oki, N.1
-
31
-
-
78650630076
-
Evolutionary dynamics of transposable elements in a small RNA world
-
Blumenstiel J, (2011) Evolutionary dynamics of transposable elements in a small RNA world. Trends Genet 27:23-31
-
(2011)
Trends. Genet.
, vol.27
, pp. 23-31
-
-
Blumenstiel, J.1
-
32
-
-
43149103661
-
Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
-
DOI 10.1101/gr.071886.107
-
Ray D, et al (2008) Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res 18:717-728 (Pubitemid 351645062)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 717-728
-
-
Ray, D.A.1
Feschotte, C.2
Pagan, H.J.T.3
Smith, J.D.4
Pritham, E.J.5
Arensburger, P.6
Atkinson, P.W.7
Craig, N.L.8
-
33
-
-
62349089758
-
Molecular domestication of transposable elements: From detrimental parasites to useful host genes
-
Sinzelle L, Izsvák Z, Ivics Z. (2009) Molecular domestication of transposable elements: from detrimental parasites to useful host genes. Cell Mol Life Sci 66:1073-1093
-
(2009)
Cell Mol. Life. Sci.
, vol.66
, pp. 1073-1093
-
-
Sinzelle, L.1
Izsvák, Z.2
Ivics, Z.3
-
34
-
-
77955658052
-
Promiscuous DNA: Horizontal transfer of transposable elements and why it matters for eukaryotic evolution
-
Schaack S, Gilbert C, Feschotte C (2010) Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol Evol 25:537-546
-
(2010)
Trends. Ecol. Evol.
, vol.25
, pp. 537-546
-
-
Schaack, S.1
Gilbert, C.2
Feschotte, C.3
-
35
-
-
0141630486
-
Retrotransposons and their recognition of pol II promoters: A comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe
-
DOI 10.1101/gr.1191603
-
Bowen N, et al (2003) Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe. Genome Res 13:1984-1997 (Pubitemid 37161756)
-
(2003)
Genome Research
, vol.13
, Issue.9
, pp. 1984-1997
-
-
Bowen, N.J.1
Jordan, I.K.2
Epstein, J.A.3
Wood, V.4
Levin, H.L.5
-
36
-
-
0346120025
-
Detection of New Transposable Element Families in Drosophila melanogaster and Anopheles gambiae Genomes
-
DOI 10.1007/s00239-003-0007-2
-
Quesneville H, Nouaud D, Anxolabéhère D, (2003) Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes. J Mol Evol 57 Suppl 1:S50-S59 (Pubitemid 37543995)
-
(2003)
Journal of Molecular Evolution
, vol.57
, Issue.SUPPL. 1
-
-
Quesneville, H.1
Nouaud, D.2
Anxolabehere, D.3
-
37
-
-
33947705203
-
Which transposable elements are active in the human genome?
-
DOI 10.1016/j.tig.2007.02.006, PII S0168952507000595
-
Mills R, et al (2007) Which transposable elements are active in the human genome? Trends Genet 23:183-91 (Pubitemid 46497510)
-
(2007)
Trends in Genetics
, vol.23
, Issue.4
, pp. 183-191
-
-
Mills, R.E.1
Bennett, E.A.2
Iskow, R.C.3
Devine, S.E.4
-
38
-
-
0029030242
-
Cell stress and translational inhibitors transiently increase the abundanceof mammalian SINE transcripts
-
Liu W, et al (1995) Cell stress and translational inhibitors transiently increase the abundanceof mammalian SINE transcripts. Nucleic Acids Res 23:1758-1765
-
(1995)
Nucleic. Acids. Res.
, vol.23
, pp. 1758-1765
-
-
Liu, W.1
-
39
-
-
0031439952
-
The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses
-
Grandbastien M, et al (1997) The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses. Genetica 100:241-252 (Pubitemid 28034771)
-
(1997)
Genetica
, vol.100
, Issue.1-3
, pp. 241-252
-
-
Grandbastien, M.-A.1
Lucas, H.2
Morel, J.-B.3
Mhiri, C.4
Vernhettes, S.5
Casacuberta, J.M.6
-
40
-
-
0035802431
-
Differential stress induction of individual Alu loci: Implications for transcription and retrotransposition
-
DOI 10.1016/S0378-1119(01)00637-0, PII S0378111901006370
-
Li T, Schmid C, (2001) Differential stress induction of individual Alu loci: implicationsfor transcription and retrotransposition. Gene 276:135-141 (Pubitemid 32925268)
-
(2001)
Gene
, vol.276
, Issue.1-2
, pp. 135-141
-
-
Li, T.-H.1
Schmid, C.W.2
-
41
-
-
0034814706
-
Stress induction of Bm1 RNA in silkworm larvae: SINEs, an unusual class of stress genes
-
DOI 10.1379/1466-1268(2001)006<0263:SIOBRI>2.0.CO;2
-
Kimura R, et al (2001) Stress induction of Bm1 RNA in silkworm larvae: SINEs, an unusual class of stress genes. Cell Stress Chaperones 6:263-272 (Pubitemid 32912011)
-
(2001)
Cell Stress and Chaperones
, vol.6
, Issue.3
, pp. 263-272
-
-
Kimura, R.H.1
Choudary, P.V.2
Stone, K.K.3
Schmid, C.W.4
-
42
-
-
70349323106
-
Transposable elements and an epigenetic basis for punctuated equilibria
-
Zeh D, Zeh J, Ishida Y, (2009) Transposable elements and an epigenetic basis for punctuated equilibria. Bioessays 31:715-726
-
(2009)
Bioessays.
, vol.31
, pp. 715-726
-
-
Zeh, D.1
Zeh, J.2
Ishida, Y.3
-
43
-
-
77952487819
-
Jumping genes and epigenetics: Towards new species
-
Rebollo R, et al (2010) Jumping genes and epigenetics: towards new species. Gene 454:1-7
-
(2010)
Gene.
, vol.454
, pp. 1-7
-
-
Rebollo, R.1
-
47
-
-
38149117037
-
Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
-
de Boer J, et al (2007) Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics 8:422
-
(2007)
BMC Genomics.
, vol.8
, pp. 422
-
-
De Boer, J.1
-
48
-
-
33750018038
-
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
-
DOI 10.1016/j.cub.2006.09.020, PII S0960982206022135
-
Ungerer M, Strakosh S, Zhen Y (2006) Genome expansion in three hybrid sunfl ower species is associated with retrotransposon proliferation. Curr Biol 16:R872-R873 (Pubitemid 44573827)
-
(2006)
Current Biology
, vol.16
, Issue.20
-
-
Ungerer, M.C.1
Strakosh, S.C.2
Zhen, Y.3
-
49
-
-
33645464594
-
Recently mobilized transposons in the human and chimpanzee genomes
-
Mills R, et al (2006) Recently mobilized transposons in the human and chimpanzee genomes. Am J Hum Genet 78:671-679
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 671-679
-
-
Mills, R.1
-
50
-
-
78650525750
-
Transposable element insertions have strongly affected human evolution
-
Britten R (2010) Transposable element insertions have strongly affected human evolution. Proc Natl Acad Sci USA 107:19945-19948
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 19945-19948
-
-
Britten, R.1
-
51
-
-
78650898250
-
Insertion sequence inversions mediated by ectopic recombination between terminal inverted repeats
-
Ling A, Cordaux R, (2010) Insertion sequence inversions mediated by ectopic recombination between terminal inverted repeats. PLoS One 5:e15654
-
(2010)
PLoS One.
, vol.5
-
-
Ling, A.1
Cordaux, R.2
-
52
-
-
0023867459
-
Haemophilia a resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man
-
Kazazian H, et al (1988) Haemophilia a resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332:164-166
-
(1988)
Nature.
, vol.332
, pp. 164-166
-
-
Kazazian, H.1
-
54
-
-
22844438250
-
A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
-
DOI 10.1007/s00439-005-1321-0
-
Chen J, et al (2005) A systematic analysis of LINE-1 endonuclease- dependent retrotranspositional events causing human genetic disease. Hum Genet 117:411-427 (Pubitemid 41236363)
-
(2005)
Human Genetics
, vol.117
, Issue.5
, pp. 411-427
-
-
Chen, J.-M.1
Stenson, P.D.2
Cooper, D.N.3
Ferec, C.4
-
55
-
-
0031897937
-
Mutations in the liver glycogen phosphorylase gene (PYGL) underlying glycogenosis type VI (Hers disease)
-
DOI 10.1086/301790
-
Burwinkel B, et al (1998) Mutations in the liver glycogen phosphorylase gene (PYGL) underlying glycogenosis type VI. Am J Hum Genet 62:785-791 (Pubitemid 28194319)
-
(1998)
American Journal of Human Genetics
, vol.62
, Issue.4
, pp. 785-791
-
-
Burwinkel, B.1
Bakker, H.D.2
Herschkovitz, E.3
Moses, S.W.4
Shin, Y.S.5
Kilimann, M.W.6
-
56
-
-
0025816675
-
Duplication of the γ-globin gene mediated by L1 long interspersed repetitive elements in an early ancestor of simian primates
-
Fitch D, et al (1991) Duplication of the gamma-globin gene mediated by L1 long interspersed repetitive elements in an early ancestor of simian primates. Proc Natl Acad Sci USA 88:7396-7400 (Pubitemid 21915158)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.16
, pp. 7396-7400
-
-
Fitch, D.H.A.1
Bailey, W.J.2
Tagle, D.A.3
Goodman, M.4
Sieu, L.5
Slightom, J.L.6
-
57
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
DOI 10.1038/nrg2337, PII NRG2337
-
Feschotte C (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9:397-405 (Pubitemid 351556062)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.5
, pp. 397-405
-
-
Feschotte, C.1
-
58
-
-
70349339300
-
Transposable elements: Powerful facilitators of evolution
-
Oliver K, Greene W (2009) Transposable elements: powerful facilitators of evolution. Bioessays 31:703-714
-
(2009)
Bioessays.
, vol.31
, pp. 703-714
-
-
Oliver, K.1
Greene, W.2
-
59
-
-
0037301560
-
Origin of a substantial fraction of human regulatory sequences from transposable elements
-
DOI 10.1016/S0168-9525(02)00006-9, PII S0168952502000069
-
Jordan I, et al (2003) Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet 19:68-72 (Pubitemid 36120660)
-
(2003)
Trends in Genetics
, vol.19
, Issue.2
, pp. 68-72
-
-
Jordan, I.K.1
Rogozin, I.B.2
Glazko, G.V.3
Koonin, E.V.4
-
60
-
-
4944239027
-
Pack-MULE transposable elements mediate gene evolution in plants
-
DOI 10.1038/nature02953
-
Jiang N, et al (2004) Pack-MULE transposable elements mediate gene evolution in plants. Nature 431:569-573 (Pubitemid 39336337)
-
(2004)
Nature
, vol.431
, Issue.7008
, pp. 569-573
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Eddy, S.R.4
Wessler, S.R.5
-
61
-
-
25144488228
-
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
-
DOI 10.1038/ng1615, PII NG1615
-
Morgante M, et al (2005) Gene duplication and exon shuffl ing by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37:997-1002 (Pubitemid 43086159)
-
(2005)
Nature Genetics
, vol.37
, Issue.9
, pp. 997-1002
-
-
Morgante, M.1
Brunner, S.2
Pea, G.3
Fengler, K.4
Zuccolo, A.5
Rafalski, A.6
-
62
-
-
0031127039
-
Centromeres, CENP-B and Tigger too
-
DOI 10.1016/S0168-9525(97)01098-6, PII S0168952597010986
-
Kipling D, Warburton P, (1997) Centromeres, CENP-B and Tigger too. Trends Genet 13:141-145 (Pubitemid 27191518)
-
(1997)
Trends in Genetics
, vol.13
, Issue.4
, pp. 141-145
-
-
Kipling, D.1
Warburton, P.E.2
-
63
-
-
11144245992
-
Transposition of hAT elements links transposable elements and V(D)J recombination
-
DOI 10.1038/nature03157
-
Zhou L, et al (2004) Transposition of hAT elements links transposable elements and V(D)J recombination. Nature 432:995-1001 (Pubitemid 40052224)
-
(2004)
Nature
, vol.432
, Issue.7020
, pp. 995-1001
-
-
Zhou, L.1
Mitra, R.2
Atkinson, P.W.3
Hickman, A.B.4
Dyda, F.5
Craig, N.L.6
-
64
-
-
33846627783
-
The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase
-
DOI 10.1128/MCB.01899-06
-
Liu D, et al (2007) The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase. Mol Cell Biol 27:1125-1132 (Pubitemid 46174572)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.3
, pp. 1125-1132
-
-
Liu, D.1
Bischerour, J.2
Siddique, A.3
Buisine, N.4
Bigot, Y.5
Chalmers, R.6
-
65
-
-
78650449644
-
Evolution of diverse mechanisms for protecting chromosome ends by Drosophila TART telomere retrotransposons
-
George J, et al (2010) Evolution of diverse mechanisms for protecting chromosome ends by Drosophila TART telomere retrotransposons. Proc Natl Acad Sci USA 107:21052-21057
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21052-21057
-
-
George, J.1
-
66
-
-
55549117831
-
Evolution of the mammalian transcription factor binding repertoire via transposable elements
-
Bourque G, et al (2008) Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18:1752-1762
-
(2008)
Genome Res.
, vol.18
, pp. 1752-1762
-
-
Bourque, G.1
-
67
-
-
0033287156
-
Sex brings transposons and genomes into conflict
-
Bestor T, (1999) Sex brings transposons and genomes into confl ict. Genetica 107:289-295 (Pubitemid 129574972)
-
(1999)
Genetica
, vol.107
, Issue.1-3
, pp. 289-295
-
-
Bestor, T.H.1
-
68
-
-
65549105694
-
Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
-
Malone C, et al. (2009) Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137:522-535
-
(2009)
Cell
, vol.137
, pp. 522-535
-
-
Malone, C.1
-
69
-
-
60149098474
-
Small RNAs as Guardians of the Genome
-
Malone C, Hannon G, (2009) Small RNAs as Guardians of the Genome. Cell 136:656-668
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.1
Hannon, G.2
-
70
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
DOI 10.1038/nrg2341, PII NRG2341
-
Suzuki M, Bird A, (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 9:465-476 (Pubitemid 351693975)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.6
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
71
-
-
34250776711
-
A family of human microRNA genes from miniature inverted-repeat transposable elements
-
Piriyapongsa J, Jordan I, (2007) A family of human microRNA genes from miniature inverted-repeat transposable elements. PLoS One 2:e203
-
(2007)
PLoS One.
, vol.2
-
-
Piriyapongsa, J.1
Jordan, I.2
-
72
-
-
0035206024
-
Transcriptional activation of short interspersed elements by DNA-damaging agents
-
Rudin C, Thompson C, (2001) Transcriptional activation of short interspersed elements by DNA-damaging agents. Genes Chromosomes Cancer 30:64-71
-
(2001)
Genes. Chromosomes Cancer
, vol.30
, pp. 64-71
-
-
Rudin, C.1
Thompson, C.2
-
73
-
-
38549152196
-
Host genome surveillance for retrotransposons by transposon-derived proteins
-
DOI 10.1038/nature06499, PII NATURE06499
-
Cam H, et al (2008) Host genome surveillance for retrotransposons by transposonderived proteins. Nature 451:431-436 (Pubitemid 351158888)
-
(2008)
Nature
, vol.451
, Issue.7177
, pp. 431-436
-
-
Cam, H.P.1
Noma, K.-I.2
Ebina, H.3
Levin, H.L.4
Grewal, S.I.S.5
-
74
-
-
62749195179
-
Mobilization of endogenous retroviruses in mice after infection with an exogenous retrovirus
-
Evans LH, et al (2009) Mobilization of endogenous retroviruses in mice after infection with an exogenous retrovirus. J Virol. 83(6):2429-2435
-
(2009)
J. Virol.
, vol.83
, Issue.6
, pp. 2429-2435
-
-
Evans, L.H.1
-
75
-
-
74549184086
-
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
-
Maumus F, et al (2009) Potential impact of stress activated retrotransposons on genome evolution in a marine diatom. BMC Genomics. 10:624
-
(2009)
BMC Genomics.
, vol.10
, pp. 624
-
-
Maumus, F.1
-
76
-
-
23844474398
-
Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae
-
Grandbastien MA, et al. (2005) Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae. Cytogenet Genome Res. 110(1-4):229-241
-
(2005)
Cytogenet. Genome. Res.
, vol.110
, Issue.1-4
, pp. 229-241
-
-
Grandbastien, M.A.1
-
77
-
-
0036613781
-
Repair by retrotransposition
-
Eickbush T, (2002) Repair by retrotransposition. Nat Genet 31:126-127
-
(2002)
Nat. Genet.
, vol.31
, pp. 126-127
-
-
Eickbush, T.1
-
78
-
-
33646840311
-
Alu RNP and Alu RNA regulate translation initiation in vitro
-
DOI 10.1093/nar/gkl246
-
Hâsler J, Strub K, (2006) Alu RNP and Alu RNA regulate translation initiation in vitro. Nucleic Acids Res 34:2374-2385 (Pubitemid 43985675)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.8
, pp. 2374-2385
-
-
Hasler, J.1
Strub, K.2
-
79
-
-
0018894384
-
Selfish genes, the phenotype paradigm and genome evolution
-
Doolittle W, Sapienza C, (1980) Selfi sh genes, the phenotype paradigm and genome evolution. Nature 284:601-603 (Pubitemid 10070865)
-
(1980)
Nature
, vol.284
, Issue.5757
, pp. 601-603
-
-
Doolittle, W.F.1
Sapienza, C.2
-
80
-
-
0029556272
-
Evolution and biological significance of human retroelements
-
DOI 10.1007/BF01728654
-
Leib-Mosch C, Seifarth W, (1995) Evolution and biological signifi cance of human retroelements. Virus Genes 11:133-145 (Pubitemid 26186006)
-
(1995)
Virus Genes
, vol.11
, Issue.2-3
, pp. 133-145
-
-
Leib-Mosch, C.1
Seifarth, W.2
-
82
-
-
77957579304
-
Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species
-
Mortada H, Vieira C, Lerat E, (2010) Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species. J Mol Evol 71: 180-91
-
(2010)
J. Mol Evol.
, vol.71
, pp. 180-91
-
-
Mortada, H.1
Vieira, C.2
Lerat, E.3
-
83
-
-
72749127435
-
The origin and behavior of mutable loci in maize
-
McClintock B, (1950) The origin and behavior of mutable loci in maize. Proc Natl Acad Sci USA 36:344-355
-
(1950)
Proc. Natl. Acad. Sci. USA
, vol.36
, pp. 344-355
-
-
Mc Clintock, B.1
-
84
-
-
0016991656
-
DNA sequence arrangement and preliminary evidence on its evolution
-
Britten R, Davidson E, (1976) DNA sequence arrangement and preliminary evidence on its evolution. Fed Proc 35:2151-2157
-
(1976)
Fed. Proc.
, vol.35
, pp. 2151-2157
-
-
Britten, R.1
Davidson, E.2
-
85
-
-
78650855113
-
Impact of Alu repeats on the evolution of human p53 binding sites
-
Cui F, Sirotin M, Zhurkin V, (2011) Impact of Alu repeats on the evolution of human p53 binding sites. Biol Direct 6:2
-
(2011)
Biol. Direct.
, vol.6
, pp. 2
-
-
Cui, F.1
Sirotin, M.2
Zhurkin, V.3
-
86
-
-
77952670452
-
Identifying repeats and transposable elements in sequenced genomes: How to fi nd your way through the dense forest of programs
-
Lerat E, (2010) Identifying repeats and transposable elements in sequenced genomes: how to fi nd your way through the dense forest of programs. Heredity 104:520-533
-
(2010)
Heredity.
, vol.104
, pp. 520-533
-
-
Lerat, E.1
-
87
-
-
65549101705
-
Teclass - A tool for automated classifi cation of unknown eukaryotic transposable elements
-
Abrusan G, et al (2009) Teclass - a tool for automated classifi cation of unknown eukaryotic transposable elements. Bioinformatics 25:1329-1330
-
(2009)
Bioinformatics
, vol.25
, pp. 1329-1330
-
-
Abrusan, G.1
-
88
-
-
43349107538
-
Using RepeatMasker to identify repetitive elements in genomic sequences
-
Chen N, (2004) Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics Chapter 4:Unit 4.10
-
(2004)
Curr Protoc Bioinformatics Chapter 4: Unit 4.10
-
-
Chen, N.1
-
89
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
DOI 10.1159/000084979
-
Jurka J, et al (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110:462-7 (Pubitemid 41159923)
-
(2005)
Cytogenetic and Genome Research
, vol.110
, Issue.1-4
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
90
-
-
75549084423
-
ISbrowser: An extension of ISfi nder for visualizing insertion sequences in prokaryotic genomes
-
Database issue
-
Kichenaradja P, et al (2010) ISbrowser: an extension of ISfi nder for visualizing insertion sequences in prokaryotic genomes. Nucleic Acids Res 38(Database issue):D62-68
-
(2010)
Nucleic. Acids. Res.
, vol.38
-
-
Kichenaradja, P.1
-
91
-
-
78650432054
-
MITE-Hunter: A program for discovering miniature inverted-repeat transposable elements from genomic sequences
-
Han Y, Wessler S, (2010) MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences. Nucleic Acids Res 38:e199
-
(2010)
Nucleic. Acids. Res.
, vol.38
-
-
Han, Y.1
Wessler, S.2
-
92
-
-
38149066750
-
SERpredict: Detection of tissue- or tumor-specifi c isoforms generated through exonization of transposable elements
-
Mersch B, et al (2007) SERpredict: detection of tissue- or tumor-specifi c isoforms generated through exonization of transposable elements. BMC Genet 8:78
-
(2007)
BMC Genet.
, vol.8
, pp. 78
-
-
Mersch, B.1
-
93
-
-
0030843036
-
Satellite DNA sequences as taxonomic markers in nematodes of agronomic interest
-
DOI 10.1016/S0169-4758(97)01113-7
-
Grenier E, Castagnone-Sereno P, Abad P, (1997) Satellite DNA sequences as taxonomic markers in nematodes of agronomic interest. Parasitol Today 13:398-401 (Pubitemid 27389328)
-
(1997)
Parasitology Today
, vol.13
, Issue.10
, pp. 398-401
-
-
Grenier, E.1
Castagnone-Sereno, P.2
Abad, P.3
-
94
-
-
26244452955
-
Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: The effects of inherited symbionts
-
DOI 10.1098/rspb.2005.3056
-
Hurst G, Jiggins F, (2005) Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proc Biol Sci 272:1525-1534 (Pubitemid 41414684)
-
(2005)
Proceedings of the Royal Society B: Biological Sciences
, vol.272
, Issue.1572
, pp. 1525-1534
-
-
Hurst, G.D.D.1
Jiggins, F.M.2
-
95
-
-
24344509193
-
Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
-
DOI 10.1101/gr.3910705
-
van de Lagemaat L, et al (2005) Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates. Genome Res 15:1243-1249 (Pubitemid 41247914)
-
(2005)
Genome Research
, vol.15
, Issue.9
, pp. 1243-1249
-
-
Van De Lagemaat, L.N.1
Gagnier, L.2
Medstrand, P.3
Mager, D.L.4
-
96
-
-
20444425693
-
An unusual primate locus that attracted two independent Alu insertions and facilitates their transcription
-
DOI 10.1016/j.jmb.2005.03.058, PII S0022283605003499
-
Ludwig A, et al (2005) An unusual primate locus that attracted two independent Alu insertions and facilitates their transcription. J Mol Biol 350:200-214 (Pubitemid 40805456)
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.2
, pp. 200-214
-
-
Ludwig, A.1
Rozhdestvensky, T.S.2
Kuryshev, V.Yu.3
Schmitz, J.4
Brosius, J.5
-
97
-
-
0242331639
-
Alu elements and hominid phylogenetics
-
DOI 10.1073/pnas.2133766100
-
Salem A, et al (2003) Alu elements and hominid phylogenetics. Proc Natl Acad Sci USA 100:12787-12791 (Pubitemid 37339977)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.22
, pp. 12787-12791
-
-
Salem, A.-H.1
Ray, D.A.2
Xing, J.3
Callinan, P.A.4
Myers, J.S.5
Hedges, D.J.6
Garber, R.K.7
Witherspoon, D.J.8
Jorde, L.B.9
Batzer, M.A.10
-
98
-
-
43449123631
-
Genome analysis of the platypus reveals unique signatures of evolution
-
DOI 10.1038/nature06936, PII NATURE06936
-
Warren W, et al (2008) Genome analysis of the platypus reveals unique signatures of evolution. Nature 453:175-183 (Pubitemid 351667983)
-
(2008)
Nature
, vol.453
, Issue.7192
, pp. 175-183
-
-
Warren, W.C.1
-
99
-
-
33646255212
-
Retroposed elements as archives for the evolutionary history of placental mammals
-
Kriegs J, et al (2006) Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol 4:e91
-
(2006)
PLoS Biol.
, vol.4
-
-
Kriegs, J.1
-
100
-
-
33646237451
-
Automated scanning for phylogenetically informative transposed elements in rodents
-
Farwick A, et al (2006) Automated scanning for phylogenetically informative transposed elements in rodents. Syst Biol 55:936-948
-
(2006)
Syst. Biol.
, vol.55
, pp. 936-948
-
-
Farwick, A.1
-
101
-
-
77955027318
-
Tracking marsupial evolution using archaic genomic retroposon insertions
-
Nilsson M, et al (2010) Tracking marsupial evolution using archaic genomic retroposon insertions. PLoS Biol 8:e1000436
-
(2010)
PLoS Biol.
, vol.8
-
-
Nilsson, M.1
-
102
-
-
29444441356
-
Bacterial insertion sequence IS256 as a potential molecular marker to discriminate invasive strains from commensal strains of Staphylococcus epidermidis
-
DOI 10.1016/j.jhin.2005.04.017, PII S0195670105002082
-
Gu J, et al (2005) Bacterial insertion sequence IS256 as a potential molecular marker to discriminate invasive strains from commensal strains of Staphylococcus epidermidis. J Hosp Infect 1:342-348 (Pubitemid 43009079)
-
(2005)
Journal of Hospital Infection
, vol.61
, Issue.4
, pp. 342-348
-
-
Gu, J.1
Li, H.2
Li, M.3
Vuong, C.4
Otto, M.5
Wen, Y.6
Gao, Q.7
-
103
-
-
23944505784
-
A retrospon analysis of Afrotherian phylogeny
-
Nishihara H, et al (2005) A retrospon analysis of Afrotherian phylogeny. Mol Biol Evol 22:1823-1833
-
(2005)
Mol. Biol. Evo.l
, vol.22
, pp. 1823-1833
-
-
Nishihara, H.1
-
104
-
-
4544222472
-
SINEs of speciation: Tracking lineages with retroposons
-
DOI 10.1016/j.tree.2004.08.002, PII S0169534704002332
-
Shedlock A, Okada N, (2004) SINEs of speciation: tracking lineages with retroposons. Trends Ecol Evol 19:545-553 (Pubitemid 39234761)
-
(2004)
Trends in Ecology and Evolution
, vol.19
, Issue.10
, pp. 545-553
-
-
Shedlock, A.M.1
Takahashi, K.2
Okada, N.3
-
105
-
-
33748586768
-
Molecular marker systems in insects: Current trends and future avenues
-
DOI 10.1111/j.1365-294X.2006.03014.x
-
Behura S, (2006) Molecular marker systems in insects: current trends and future avenues. Mol Ecol 15:3087-3113 (Pubitemid 44379720)
-
(2006)
Molecular Ecology
, vol.15
, Issue.11
, pp. 3087-3113
-
-
Behura, S.K.1
-
106
-
-
68749104735
-
Markers and mapping revisited: Fi nding your gene
-
Jones N, et al (2009) Markers and mapping revisited: fi nding your gene. New Phytol 183:935-966
-
(2009)
New. Phytol.
, vol.183
, pp. 935-966
-
-
Jones, N.1
-
107
-
-
79953078781
-
Analysis of plant diversity with retrotransposon-based molecular markers
-
Kalendar R, et al (2011) Analysis of plant diversity with retrotransposon-based molecular markers. Heredity 106:520-530
-
(2011)
Heredity.
, vol.106
, pp. 520-530
-
-
Kalendar, R.1
-
108
-
-
40549142353
-
Transposon-Based Strategies for the Identifi cation of Essential Bacterial Genes
-
Osterman A, and Gerdes Y (ed Microbial Gene Essentiality, Totowa, NJ
-
Reznikoff W, Winterberg K, (2008) Transposon-Based Strategies for the Identifi cation of Essential Bacterial Genes. In: Osterman A, and Gerdes Y (ed) Methods in Molecular Biology, vol. 416: Microbial Gene Essentiality, Totowa, NJ
-
(2008)
Methods in Molecular Biology
, vol.416
-
-
Reznikoff, W.1
Winterberg, K.2
-
109
-
-
77951972320
-
Transposition of fl y mariner elements into bacteria as a genetic tool for mutagenesis
-
Picardeau M, (2010) Transposition of fl y mariner elements into bacteria as a genetic tool for mutagenesis. Genetica 138:551-558
-
(2010)
Gene.tica.
, vol.138
, pp. 551-558
-
-
Picardeau, M.1
-
110
-
-
0033910576
-
TnaRaOut, a transposon-based approach to identify and characterize essential bacterial genes
-
DOI 10.1038/77305
-
Judson N, Mekalanos J, (2000) TnAraOut, a transposon-based approach to identify and characterize essential bacterial genes. Nat Biotechnol 18:740-745 (Pubitemid 30460689)
-
(2000)
Nature Biotechnology
, vol.18
, Issue.7
, pp. 740-745
-
-
Judson, N.1
Mekalanos, J.J.2
-
111
-
-
50249139585
-
Essential genes in Salmonella enteritidis as identifi ed by TnAraOut mutagenesis
-
Kim J, Youm G, Kwon Y, (2008) Essential genes in Salmonella enteritidis as identifi ed by TnAraOut mutagenesis. Curr Microbiol 57:391-394
-
(2008)
Curr. Microbiol.
, vol.57
, pp. 391-394
-
-
Kim, J.1
Youm, G.2
Kwon, Y.3
-
112
-
-
0029117137
-
Simultaneous identifi - Cation of bacterial virulence genes by negative selection
-
Hensel M, et al (1995) Simultaneous identifi - cation of bacterial virulence genes by negative selection. Science 269:400-403
-
(1995)
Science.
, vol.269
, pp. 400-403
-
-
Hensel, M.1
-
113
-
-
29144473841
-
Signature-tagged transposon mutagenesis studies demonstrate the dynamic nature of cecal colonization of 2-week-old chickens by Campylobacter jejuni
-
DOI 10.1128/AEM.71.12.8031-8041.2005
-
Grant A, et al (2005) Signature-tagged transposon mutagenesis studies demonstrate the dynamic nature of cecal colonization of 2-week-old chickens by Campylobacter jejuni. Appl Environ Microbiol 71:8031-8041 (Pubitemid 41803926)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8031-8041
-
-
Grant, A.J.1
Coward, C.2
Jones, M.A.3
Woodall, C.A.4
Barrow, P.A.5
Maskell, D.J.6
-
114
-
-
0032555218
-
Systematic identification of essential genes by in vitro mariner mutagenesis
-
DOI 10.1073/pnas.95.15.8927
-
Akerley B, et al (1998) Systematic identifi cation of essential genes by in vitro mariner mutagenesis. Proc Natl Acad Sci USA 95:8927-8932 (Pubitemid 28350591)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.15
, pp. 8927-8932
-
-
Akerley, B.J.1
Rubin, E.J.2
Camilli, A.3
Lampe, D.J.4
Robertson, H.M.5
Mekalanos, J.J.6
-
115
-
-
33645995109
-
Tn5 transposition: A molecular tool for studying protein structurefunction
-
Reznikoff W, (2006) Tn5 transposition: a molecular tool for studying protein structurefunction. Biochem Soc Trans 34:320-323
-
(2006)
Biochem Soc. Trans.
, vol.34
, pp. 320-323
-
-
Reznikoff, W.1
-
116
-
-
78650489387
-
Expanding the genetic toolbox for Leptospira species by generation of fl uorescent bacteria
-
Aviat F, et al (2010) Expanding the genetic toolbox for Leptospira species by generation of fl uorescent bacteria. Appl Environ Microbiol 76:8135-8142
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 8135-8142
-
-
Aviat, F.1
-
117
-
-
17644368883
-
Random insertional mutagenesis of Leptospira interrogans, the agent of leptospirosis, using a mariner transposon
-
DOI 10.1128/JB.187.9.3255-3258.2005
-
Bourhy P, et al (2005) Random insertional mutagenesis of Leptospira interrogans, the agent of leptospirosis, using a mariner transposon. J Bacteriol. 187:3255-3258 (Pubitemid 40571619)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.9
, pp. 3255-3258
-
-
Bourhy, P.1
Louvel, H.2
Saint Girons, I.3
Picardeau, M.4
-
119
-
-
79952840062
-
Transpositional reactivation of two LTR retrotransposons in rice- Zizania recombinant inbred lines (RILs)
-
Wang H, et al (2010) Transpositional reactivation of two LTR retrotransposons in rice- Zizania recombinant inbred lines (RILs). Hereditas 147:264-277
-
(2010)
Hereditas.
, vol.147
, pp. 264-277
-
-
Wang, H.1
-
120
-
-
78049329663
-
Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice
-
Takagi K, et al (2010) Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice. Mol Genet Genomics 284:343-355
-
(2010)
Mol. Genet. Genomics.
, vol.284
, pp. 343-355
-
-
Takagi, K.1
-
121
-
-
33846230103
-
Targeted engineering of the Caenorhabditis elegans genome following Mos1-triggered chromosomal breaks
-
DOI 10.1038/sj.emboj.7601463, PII 7601463
-
Robert V, Bessereau JL, (2007) Targeted engineering of the Caenorhabditis elegans genome following Mos1-triggered chromosomal breaks. EMBO J 26:170-183 (Pubitemid 46094709)
-
(2007)
EMBO Journal
, vol.26
, Issue.1
, pp. 170-183
-
-
Robert, V.1
Bessereau, J.-L.2
-
122
-
-
55049117864
-
Single-copy insertion of transgenes in Caenorhabditis elegans
-
Frokjaer-Jensen C, et al (2008) Single-copy insertion of transgenes in Caenorhabditis elegans. Nat Genet 40:1375-1383
-
(2008)
Nat. Genet.
, vol.40
, pp. 1375-1383
-
-
Frokjaer-Jensen, C.1
-
123
-
-
34247516317
-
The use of Tn5 transposable elements in a gene trapping strategy for the protozoan Leishmania
-
DOI 10.1016/j.ijpara.2006.12.021, PII S0020751907000318
-
Laurentino E, et al (2007) The use of Tn5 transposable elements in a gene trapping strategy for the protozoan Leishmania. Int J Parasitol 37:735-742 (Pubitemid 46654011)
-
(2007)
International Journal for Parasitology
, vol.37
, Issue.7
, pp. 735-742
-
-
Laurentino, E.C.1
Ruiz, J.C.2
Brito, L.O.3
Fiandt, M.4
Nicoletti, L.M.5
Jamur, M.C.6
Oliver, C.7
Tosi, L.R.O.8
Cruz, A.K.9
-
125
-
-
66649104843
-
PiggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome
-
Balu B, et al (2009) piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome. BMC Microbiol 9:83
-
(2009)
BMC Microbiol.
, vol.9
, pp. 83
-
-
Balu, B.1
-
126
-
-
77949277866
-
A transposon toolkit for gene transfer and mutagenesis in protozoan parasites
-
Damasceno J, Beverley S, Tosi L, (2010) A transposon toolkit for gene transfer and mutagenesis in protozoan parasites. Genetica 138:301-311
-
(2010)
Gene.Tica.
, vol.138
, pp. 301-311
-
-
Damasceno, J.1
Beverley, S.2
Tosi, L.3
-
127
-
-
0030724895
-
Insertional mutagenesis by a modifi ed in vitro Ty1 transposition system
-
Garraway L, et al (1997) Insertional mutagenesis by a modifi ed in vitro Ty1 transposition system. Gene 198:27-35
-
(1997)
Gene.
, vol.198
, pp. 27-35
-
-
Garraway, L.1
-
128
-
-
70449729325
-
Elementary research into the transformation BmN cells mediated by the piggyBac transposon vector
-
Renyu X, et al. (2009) Elementary research into the transformation BmN cells mediated by the piggyBac transposon vector. J Biotechnol 144:272-278
-
(2009)
J. Biotechnol
, vol.144
, pp. 272-278
-
-
Renyu, X.1
-
130
-
-
7544239459
-
Promoter and piggyBac activities within embryos of the potato tuber moth, Phthorimaea operculella, Zeller (Lepidoptera: Gelechiidae)
-
DOI 10.1016/j.gene.2004.08.008, PII S0378111904004925
-
Mohammed A, Coates C, (2004) Promoter and piggyBac activities within embryos of the potato tuber moth, P hthorimaea operculella, Zeller (Lepidoptera: Gelechiidae). Gene 342:293-301 (Pubitemid 39452348)
-
(2004)
Gene
, vol.342
, Issue.2
, pp. 293-301
-
-
Mohammed, A.1
Coates, C.J.2
-
131
-
-
79251615290
-
Germ-line transformation of the Queensland fruit fl y, Bactrocera tryoni, using a piggyBac vector in the presence of endogenous piggyBac elements
-
Raphaël K, et al (2010) Germ-line transformation of the Queensland fruit fl y, Bactrocera tryoni, using a piggyBac vector in the presence of endogenous piggyBac elements. Genetica 139:91-97
-
(2010)
Gene.Tica.
, vol.139
, pp. 91-97
-
-
Raphaël, K.1
-
132
-
-
34547110588
-
A sensitized PiggyBac-based screen for regulators of border cell migration in drosophila
-
DOI 10.1534/genetics.107.071282
-
Mathieu J, et al (2007) A Sensitized PiggyBac- Based Screen for Regulators of Border Cell Migration in Drosophila. Genetics 176:1579-1590 (Pubitemid 47105219)
-
(2007)
Genetics
, vol.176
, Issue.3
, pp. 1579-1590
-
-
Mathieu, J.1
Sung, H.-H.2
Pugieux, C.3
Soetaert, J.4
Rorth, P.5
-
133
-
-
34748827977
-
Targeting ie-1 gene by RNAi induces baculoviral resistance in lepidopteran cell lines and in transgenic silkworms
-
DOI 10.1111/j.1365-2583.2007.00753.x
-
Kanginakudru S, et al (2007) Targeting ie-1 gene by RNAi induces baculoviral resistance in lepidopteran cell lines and in transgenic silkworms. Insect Mol Biol 16:635-644 (Pubitemid 47481032)
-
(2007)
Insect Molecular Biology
, vol.16
, Issue.5
, pp. 635-644
-
-
Kanginakudru, S.1
Royer, C.2
Edupalli, S.V.3
Jalabert, A.4
Mauchamp, B.5
Prasad, S.V.6
Chavancy, G.7
Couble, P.8
Nagaraju, J.9
-
134
-
-
0036785508
-
Re-engineering the sterile insect technique
-
Alphey L, (2002) Re-engineering the sterile insect technique. Insect Biochem Mol Biol 32:1243-1247
-
(2002)
Insect. Biochem. Mol. Biol.
, vol.32
, pp. 1243-1247
-
-
Alphey, L.1
-
135
-
-
1242344733
-
Insect transgenesis and its potential role in agriculture and human health
-
DOI 10.1016/j.ibmb.2003.10.004
-
Robinson A, Franz G, Atkinson P, (2004) Insect transgenesis and its potential role in agriculture and human health. Insect Biochem Mol Biol 34:113-120 (Pubitemid 38215067)
-
(2004)
Insect Biochemistry and Molecular Biology
, vol.34
, Issue.2
, pp. 113-120
-
-
Robinson, A.S.1
Franz, G.2
Atkinson, P.W.3
-
136
-
-
79251648043
-
Mobility properties of the Hermes transposable element in transgenic lines of Aedes aegypti
-
Smith R, Atkinson P, (2010) Mobility properties of the Hermes transposable element in transgenic lines of Aedes aegypti. Genetica 139:7-22
-
(2010)
Gene.Tica.
, vol.139
, pp. 7-22
-
-
Smith, R.1
Atkinson, P.2
-
137
-
-
0033813646
-
Purifi ed mariner (Mos1) transposase catalyzes the integration of marked elements into the germ-line of the yellow fever mosquito, Aedes aegypti
-
Coates C, et al (2000) Purifi ed mariner (Mos1) transposase catalyzes the integration of marked elements into the germ-line of the yellow fever mosquito, Aedes aegypti. Insect Biochemistry and Molecular Biology 30:1003-1008
-
(2000)
Insect Biochemistry and Molecular Biology
, vol.30
, pp. 1003-1008
-
-
Coates, C.1
-
138
-
-
0034007556
-
Toward Anopheles transformation: Minos element activity in anopheline cells and embryos
-
DOI 10.1073/pnas.040568397
-
Catteruccia F, et al (2000). Toward Anopheles transformation: Minos element activity in anopheline cells and embryos. Proc Natl AcadSci USA 97:2157-2162 (Pubitemid 30134038)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.5
, pp. 2157-2162
-
-
Catteruccia, F.1
Nolan, T.2
Blass, C.3
Muller, H.-M.4
Crisanti, A.5
Kafatos, F.C.6
Loukeris, T.G.7
-
139
-
-
77957989924
-
Using chimeric piggy- Bac transposase to achieve directed interplasmid transposition in silkworm Bombyx mori and fruit fl y Drosophila cells
-
Wang N, et al (2010) Using chimeric piggy- Bac transposase to achieve directed interplasmid transposition in silkworm Bombyx mori and fruit fl y Drosophila cells. J Zhejiang Univ- Sci B 11:728-734
-
(2010)
J. Zhejiang. Univ.- Sci B.
, vol.11
, pp. 728-734
-
-
Wang, N.1
-
140
-
-
10744230091
-
Gene vector and transposable element behavior in mosquitoes
-
O'Brochta D, (2003) Gene vector and transposable element behavior in mosquitoes. J Exp Biol 206:3823-3834
-
(2003)
J. Exp. Biol.
, vol.206
, pp. 3823-3834
-
-
O'Brochta, D.1
-
142
-
-
0034144317
-
Structure of Hermes integrations in the germline of the yellow fever mosquito, Aedes aegypti
-
DOI 10.1046/j.1365-2583.2000.00153.x
-
Jasinskiene N, Coates C, James A, (2000) Structure of Hermes integrations in the germline of the yellow fever mosquito, Aedes aegypti. Insect Mol Biol 9:11-18 (Pubitemid 30121208)
-
(2000)
Insect Molecular Biology
, vol.9
, Issue.1
, pp. 11-18
-
-
Jasinskiene, N.1
Coates, C.J.2
James, A.A.3
-
143
-
-
0029895562
-
Hermes, a functional non-drosophilid insect gene vector from Musca domestica
-
O'Brochta D, et al (1996) Hermes, a functional non-drosophilid insect gene vector from Musca domestica. Genetics 142:907-914
-
(1996)
Gene.Tics.
, vol.142
, pp. 907-914
-
-
O'Brochta, D.1
-
144
-
-
0023666214
-
Heritable somatic excision of a Drosophila transposon
-
Bryan G, Jacobson J, Hartl D, (1987) Heritable somatic excision of a Drosophila transposon. Science 235:1636-1638
-
(1987)
Science.
, vol.235
, pp. 1636-1638
-
-
Bryan, G.1
Jacobson, J.2
Hartl, D.3
-
145
-
-
0027308738
-
The transposable element mariner mediates germline transformation in Drosophila melanogaster
-
Lidholm D, Lohe A, Hartl D, (1993) The transposable element mariner mediates germline transformation in Drosophila melanogaster. Genetics 134:859-868 (Pubitemid 23193584)
-
(1993)
Genetics
, vol.134
, Issue.3
, pp. 859-868
-
-
Lidholm, D.-A.1
Lohe, A.R.2
Hartl, D.L.3
-
146
-
-
0035543642
-
Germline transformation of the malaria vector, Anopheles gambiae, with the piggyBac transposable element
-
DOI 10.1046/j.0962-1075.2001.00299.x
-
Grossman G, et al (2001) Germline transformation of the malaria vector, Anopheles gambiae, with the piggyBac transposable element. Insect Mol Biol 10:597-604 (Pubitemid 34010043)
-
(2001)
Insect Molecular Biology
, vol.10
, Issue.6
, pp. 597-604
-
-
Grossman, G.L.1
Rafferty, C.S.2
Clayton, J.R.3
Stevens, T.K.4
Mukabayire, O.5
Benedict, M.Q.6
-
147
-
-
0035984512
-
Germ-line transformation of the South American malaria vector, Anopheles albimanus, with a piggyBac/EGFP transposon vector is routine and highly efficient
-
DOI 10.1046/j.1365-2583.2002.00336.x
-
Perera O, Harrell R, Handler A, (2002) Germline transformation of the South Americanmalaria vector, Anopheles albimanus, with a piggyBac/ EGFP transposon vector is routine and highly effi cient. Insect Mol Biol 11:291-297 (Pubitemid 34877813)
-
(2002)
Insect Molecular Biology
, vol.11
, Issue.4
, pp. 291-297
-
-
Perera, O.P.1
Harrell II, R.A.2
Handler, A.M.3
-
150
-
-
33845698104
-
P[acman]: A BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster
-
DOI 10.1126/science.1134426
-
Venken K, et al. (2006) P(acman): A BAC Transgenic Platform for Targeted Insertion of Large DNA Fragments in D. melanogaster. Science 314:1747-1751 (Pubitemid 44969080)
-
(2006)
Science
, vol.314
, Issue.5806
, pp. 1747-1751
-
-
Venken, K.J.T.1
He, Y.2
Hoskins, R.A.3
Bellen, H.J.4
-
151
-
-
0033771962
-
Site-specifi c gene targeting for gene expression in eukaryotes
-
Gorman C, Bullock C, (2000) Site-specifi c gene targeting for gene expression in eukaryotes. Curr Opin Biotechnol 11:455-460
-
(2000)
Curr. Opin. Biotechnol
, vol.11
, pp. 455-460
-
-
Gorman, C.1
Bullock, C.2
-
152
-
-
1542397137
-
Phage integrases: Biology and applications
-
DOI 10.1016/j.jmb.2003.09.082, PII S0022283603013561
-
Groth A, Calos M, (2004) Phage integrases: biology and applications. J Mol Biol 335:667-678 (Pubitemid 38352810)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.3
, pp. 667-678
-
-
Groth, A.C.1
Calos, M.P.2
-
153
-
-
33749536744
-
Transposons for gene therapy
-
Ivics Z, Izsvak Z, (2006) Transposons for gene therapy! Curr Gene Ther 6:593-607
-
(2006)
Curr Gene. Ther.
, vol.6
, pp. 593-607
-
-
Ivics, Z.1
Izsvak, Z.2
-
154
-
-
0032529476
-
The Himar1 mariner transposase cloned in a recombinant adenovirus vector is functional in mammalian cells
-
DOI 10.1093/nar/26.16.3687
-
Zhang L, et al (1998) The Himar1 mariner transposase cloned in a recombinant adenovirus vector is functional in mammalian cells. Nucleic Acids Res 26:3687-3693 (Pubitemid 28367973)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.16
, pp. 3687-3693
-
-
Zhang, L.1
Sankar, U.2
Lampe, D.J.3
Robertson, H.M.4
Graham, F.L.5
-
155
-
-
33846139687
-
Hyperactive Himar1 transposase mediates transposition in cell culture and enhances gene expression in vivo
-
DOI 10.1089/hum.2006.17.1006
-
Keravala A, et al (2006) Hyperactive Himar1 transposase mediates transposition in cell culture and enhances gene expression in vivo. Hum Gene Ther 17:1006-1018 (Pubitemid 46076742)
-
(2006)
Human Gene Therapy
, vol.17
, Issue.10
, pp. 1006-1018
-
-
Keravala, A.1
Liu, D.2
Lechman, E.R.3
Wolfe, D.4
Nash, J.A.5
Lampe, D.J.6
Robbins, P.D.7
-
156
-
-
77957579849
-
Gene transfer effi ciency and genome-wide integration profi ling of Sleeping Beauty, Tol2, and piggyBac transposons in human primary T-cells
-
Huang X, et al (2010) Gene transfer effi ciency and genome-wide integration profi ling of Sleeping Beauty, Tol2, and piggyBac transposons in human primary T-cells. Mol Ther 18:1803-1813
-
(2010)
Mol. Ther.
, vol.18
, pp. 1803-1813
-
-
Huang, X.1
-
157
-
-
0034633628
-
Identifi cation of a functional transposase of the Tol2 element, an Ac-like element from the Japanese medaka fi sh, and its transposition in the zebrafi sh germ lineage
-
Kawakami K, Shima A, Kawakami N, (2000) Identifi cation of a functional transposase of the Tol2 element, an Ac-like element from the Japanese medaka fi sh, and its transposition in the zebrafi sh germ lineage. Proc Natl Acad Sci USA 97:11403-11408
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 11403-11408
-
-
Kawakami, K.1
Shima, A.2
Kawakami, N.3
-
158
-
-
0031794149
-
Transposition of the drosophila element mariner into the chicken germ line
-
DOI 10.1038/3497
-
Sherman A, et al (1998) Transposition of the Drosophila element mariner into the chicken germ line. Nat Biotechnol 16:1050-1053 (Pubitemid 28515898)
-
(1998)
Nature Biotechnology
, vol.16
, Issue.11
, pp. 1050-1053
-
-
Sherman, A.1
Dawson, A.2
Mather, C.3
Gilhooley, H.4
Li, Y.5
Mitchell, R.6
Finnegan, D.7
Sang, H.8
-
159
-
-
0030662074
-
Molecular reconstruction of sleeping beauty, a Tc1-like transposon from fish, and its transposition in human cells
-
Ivics Z, et al (1997) Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fi sh, and its transposition in human cells. Cell 91:501-510 (Pubitemid 27508239)
-
(1997)
Cell
, vol.91
, Issue.4
, pp. 501-510
-
-
Ivics, Z.1
Hackett, P.B.2
Plasterk, R.H.3
Izsvak, Z.4
-
160
-
-
0242334000
-
Effi cient gene delivery and gene expression in zebrafi sh using the Sleeping Beauty transposon
-
Davidson E, et al (2003) Effi cient gene delivery and gene expression in zebrafi sh using the Sleeping Beauty transposon. Dev Biol 263:191-202
-
(2003)
Dev. Biol.
, vol.263
, pp. 191-202
-
-
Davidson, E.1
-
161
-
-
67649603896
-
Transgenesis in Xenopus using the Sleeping Beauty transposon system
-
Yergeau D, et al (2009) Transgenesis in Xenopus using the Sleeping Beauty transposon system. Dev Dyn 238:1727-1743
-
(2009)
Dev. Dyn.
, vol.238
, pp. 1727-1743
-
-
Yergeau, D.1
-
162
-
-
79955831410
-
Pig transgenesis by Sleeping Beauty DNA transposition
-
Jakobsen J, et al (2011) Pig transgenesis by Sleeping Beauty DNA transposition. Transgenic Res 20:533-545
-
(2011)
Transgenic Res.
, vol.20
, pp. 533-545
-
-
Jakobsen, J.1
-
163
-
-
0035979255
-
Efficient chromosomal transposition of a Tc1/mariner-like transposon Sleeping Beauty in mice
-
DOI 10.1073/pnas.161071798
-
Horie K, et al (2001) Effi cient chromosomal transposition of a Tc1/mariner-like transposon Sleeping Beauty in mice. Proc Natl Acad Sci USA 98:9191-6 (Pubitemid 32743892)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.16
, pp. 9191-9196
-
-
Horie, K.1
Kuroiwa, A.2
Ikawa, M.3
Okabe, M.4
Kondoh, G.5
Matsuda, Y.6
Takeda, J.7
-
164
-
-
0034964286
-
Transposition and gene disruption in the male germline of the mouse
-
DOI 10.1002/gene.1037
-
Dupuy A, Fritz S, Largaespada D, (2001) Transposition and gene disruption in the male germline of the mouse. Genesis 30:82-88 (Pubitemid 32613655)
-
(2001)
Genesis
, vol.30
, Issue.2
, pp. 82-88
-
-
Dupuy, A.J.1
Fritz, S.2
Largaespada, D.A.3
-
165
-
-
0141566659
-
Transposon mutagenesis of the mouse germline
-
Carlson C, et al (2003) Transposon mutagenesis of the mouse germline. Genetics 165:243-256 (Pubitemid 37204070)
-
(2003)
Genetics
, vol.165
, Issue.1
, pp. 243-256
-
-
Carlson, C.M.1
Dupuy, A.J.2
Fritz, S.3
Roberg-Perez, K.J.4
Fletcher, C.F.5
Largaespada, D.A.6
-
166
-
-
70349777492
-
Generating mutant rats using the Sleeping Beauty transposon system
-
Kitada K, et al (2009) Generating mutant rats using the Sleeping Beauty transposon system. Methods 49:236-42
-
(2009)
Methods.
, vol.49
, pp. 236-42
-
-
Kitada, K.1
-
167
-
-
0037007139
-
Mammalian germ-line transgenesis by transposition
-
DOI 10.1073/pnas.062630599
-
Dupuy A, et al (2002) Mammalian germ-line transgenesis by transposition. Proc Natl Acad Sci USA 99:4495-4499 (Pubitemid 34286013)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.7
, pp. 4495-4499
-
-
Dupuy, A.J.1
Clark, K.2
Carlson, C.M.3
Fritz, S.4
Davidson, A.E.5
Markley, K.M.6
Finley, K.7
Fletcher, C.F.8
Ekker, S.C.9
Hackett, P.B.10
Horn, S.11
Largaespada, D.A.12
-
168
-
-
32944463921
-
RNA as a source of transposase for Sleeping Beauty-mediated gene insertion and expression in somatic cells and tissues
-
DOI 10.1016/j.ymthe.2005.10.014, PII S1525001605016680
-
Wilber A, et al (2006) RNA as a source of transposase for Sleeping Beauty-mediated gene insertion and expression in somatic cells and tissues. Mol Ther 13:625-630 (Pubitemid 43257631)
-
(2006)
Molecular Therapy
, vol.13
, Issue.3
, pp. 625-630
-
-
Wilber, A.1
Frandsen, J.L.2
Geurts, J.L.3
Largaespada, D.A.4
Hackett, P.B.5
McIvor, R.S.6
-
169
-
-
67349250885
-
Molecular evolution of a novel hyperactive Sleeping Beauty transposase enables robust stable gene transfer in vertebrates
-
Mátés L, et al (2009) Molecular evolution of a novel hyperactive Sleeping Beauty transposase enables robust stable gene transfer in vertebrates. Nat Genet 41:753-761
-
(2009)
Nat. Genet.
, vol.41
, pp. 753-761
-
-
Mátés, L.1
-
170
-
-
70349320475
-
Stable gene transfer and expression in cord blood-derived CD34+ hematopoietic stem and progenitor cells by an hyperactive Sleeping Beauty transposon system
-
Xue X, et al (2009) Stable gene transfer and expression in cord blood-derived CD34+ hematopoietic stem and progenitor cells by an hyperactive Sleeping Beauty transposon system. Blood 114:1319-1330
-
(2009)
Blood
, vol.114
, pp. 1319-1330
-
-
Xue, X.1
-
171
-
-
50549098264
-
Sleeping Beauty vector system moves toward human trials in the United States
-
Williams A, (2008) Sleeping Beauty vector system moves toward human trials in the United States. Mol Ther 16:1515-1516
-
(2008)
Mol. Ther.
, vol.16
, pp. 1515-1516
-
-
Williams, A.1
-
172
-
-
0029151025
-
Assay for movement of Lepidopteran transposon IFP2 in insect cells using a baculovirus genome as a target DNA
-
Fraser M, et al (1995) Assay for movement of Lepidopteran transposon IFP2 in insect cells using a baculovirus genome as a target DNA. Virology 211:397-407
-
(1995)
Virology.
, vol.211
, pp. 397-407
-
-
Fraser, M.1
-
173
-
-
77950521465
-
PiggyBac transposon- mediated long-term gene expression in mice
-
Nakanishi H, et al (2010) piggyBac transposon- mediated long-term gene expression in mice. Mol Ther 18:707-714
-
(2010)
Mol. Ther.
, vol.18
, pp. 707-714
-
-
Nakanishi, H.1
-
174
-
-
73849086119
-
PiggyBac transposon-based inducible gene expression in vivo after somatic cell gene transfer
-
Saridey S, et al (2009) piggyBac transposon-based inducible gene expression in vivo after somatic cell gene transfer. Mol Ther 17:2115-2120
-
(2009)
Mol. Ther.
, vol.17
, pp. 2115-2120
-
-
Saridey, S.1
-
175
-
-
75649137272
-
PiggyBac transgenic strategies in the developing chicken spinal cord
-
Lu Y, Lin C, Wang X, (2009) piggyBac transgenic strategies in the developing chicken spinal cord. Nucleic Acids Res 37:e141
-
(2009)
Nucleic. Acids. Res.
, vol.37
-
-
Lu, Y.1
Lin, C.2
Wang, X.3
-
176
-
-
33750060436
-
PiggyBac is a flexible and highly active transposon as compared to Sleeping Beauty, Tol2, and Mos1 in mammalian cells
-
DOI 10.1073/pnas.0606979103
-
Wu S, (2006) piggyBac is a fl exible and highly active transposon as compared to sleeping beauty, Tol2, and Mos1 in mammalian cells. Proc Natl Acad Sci USA 103:15008-15013 (Pubitemid 44583155)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.41
, pp. 15008-15013
-
-
Wu, S.C.-Y.1
Meir, Y.-J.J.2
Coates, C.J.3
Handler, A.M.4
Pelczar, P.5
Moisyadi, S.6
Kaminski, J.M.7
-
177
-
-
23744479962
-
Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice
-
DOI 10.1016/j.cell.2005.07.013, PII S0092867405007075
-
Ding S, et al (2005) Effi cient transposition of the piggyBac (PB) transposon in mammalian cells and mice. Cell 122:473-483 (Pubitemid 41127147)
-
(2005)
Cell
, vol.122
, Issue.3
, pp. 473-483
-
-
Ding, S.1
Wu, X.2
Li, G.3
Han, M.4
Zhuang, Y.5
Xu, T.6
-
178
-
-
48249130858
-
Chromosomal transposition of piggyBac in mouse embryonic stem cells
-
Wang W, et al (2008) Chromosomal transposition of piggyBac in mouse embryonic stem cells. Proc Natl Acad Sci USA 105:9290-9295
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9290-9295
-
-
Wang, W.1
-
179
-
-
69249232195
-
An effi cient and reversible transposable system for gene delivery and lineage-specifi c differentiation in human embryonic stem cells
-
Lacoste A, Berenshteyn F, Brivanlou A, (2009) An effi cient and reversible transposable system for gene delivery and lineage-specifi c differentiation in human embryonic stem cells. Cell Stem Cell 5:332-342
-
(2009)
Cell Stem. Cell
, vol.5
, pp. 332-342
-
-
Lacoste, A.1
Berenshteyn, F.2
Brivanlou, A.3
-
180
-
-
34547638572
-
Generation of an inducible and optimised piggyBac transposon system
-
Cadiñanos J, Bradley A, (2007) Generation of an inducible and optimised piggyBac transposon system. Nucleic Acids Res 35:e87
-
(2007)
Nucleic. Acids. Res.
, vol.35
-
-
Cadiñanos, J.1
Bradley, A.2
-
181
-
-
79952138028
-
A hyperactive piggyback transposase for mammalian applications
-
Yusa K, et al (2010) A hyperactive piggyback transposase for mammalian applications. Proc Natl Acad Sci USA 108:1531-1536
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1531-1536
-
-
Yusa, K.1
-
182
-
-
33845577011
-
Chimeric Mos1 and piggyBac transposases result in site-directed integration
-
Maragathavally K, Kaminski J, Coates C, (2006) Chimeric Mos1 and piggyBac transposases result in site-directed integration. FASEB J 20:1880-1882
-
(2006)
Faseb J.
, vol.20
, pp. 1880-1882
-
-
Maragathavally, K.1
Kaminski, J.2
Coates, C.3
-
183
-
-
77950953208
-
PiggyBac transposon/ transposase system to generate CD19-specifi c T cells for the treatment of B-lineage malignancies
-
Raja Manuri P, et al (2010) piggyBac transposon/ transposase system to generate CD19-specifi c T cells for the treatment of B-lineage malignancies. Hum Gene Ther 21:427-437
-
(2010)
Hum. Gene. Ther.
, vol.21
, pp. 427-437
-
-
Raja Manuri, P.1
-
185
-
-
64749083939
-
PiggyBac transposition reprograms fi broblasts to induced pluripotent stem cells
-
Woltjen K, et al (2009) piggyBac transposition reprograms fi broblasts to induced pluripotent stem cells. Nature 458:766-770
-
(2009)
Nature.
, vol.458
, pp. 766-770
-
-
Woltjen, K.1
-
186
-
-
64749111225
-
Virus-free induction of pluripotency and subsequent excision of reprogramming factors
-
Kaji K, et al (2009) Virus-free induction of pluripotency and subsequent excision of reprogramming factors. Nature 458:771-5
-
(2009)
Nature.
, vol.458
, pp. 771-5
-
-
Kaji, K.1
-
187
-
-
78149309453
-
Novel hyperactive transposons for genetic modifi cation of induced pluripotent and adult stem cells: A nonviral paradigm for coaxed differentiation
-
Belay E, et al (2010) Novel hyperactive transposons for genetic modifi cation of induced pluripotent and adult stem cells: a nonviral paradigm for coaxed differentiation. Stem Cells 28:1760-1771
-
(2010)
Stem. Cells
, vol.28
, pp. 1760-1771
-
-
Belay, E.1
-
188
-
-
0024584243
-
Novel use of polymerase chain reaction to amplify cellular DNA adjacent to an integrated provirus
-
Silver J, Keerikatte V, (1989) Novel use of polymerase chain reaction to amplify cellular DNA adjacent to an integrated provirus. J Virol 63:1924-1928 (Pubitemid 19107786)
-
(1989)
Journal of Virology
, vol.63
, Issue.5
, pp. 1924-1928
-
-
Silver, J.1
Keerikatte, V.2
-
189
-
-
0024431684
-
In vivo footprinting of a muscle specific enhancer by ligation mediated PCR
-
Mueller P, Wold B, (1989) In vivo footprinting of a muscle specifi c enhancer by ligation mediated PCR. Science 246:780-786 (Pubitemid 19279168)
-
(1989)
Science
, vol.246
, Issue.4931
, pp. 780-786
-
-
Mueller, P.R.1
Wold, B.2
-
190
-
-
77955220225
-
Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing
-
Paruzynski A, et al (2010) Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing. Nat Protoc 5:1379-1395
-
(2010)
Nat. Protoc.
, vol.5
, pp. 1379-1395
-
-
Paruzynski, A.1
-
191
-
-
36749052217
-
High-resolution insertion-site analysis by linear amplification-mediated PCR (LAM-PCR)
-
DOI 10.1038/nmeth1103, PII NMETH1103
-
Schmidt M, et al (2007) High-resolution insertion-site analysis by linear amplifi cationmediated PCR (LAM-PCR). Nat Methods 4:1051-1057 (Pubitemid 350201778)
-
(2007)
Nature Methods
, vol.4
, Issue.12
, pp. 1051-1057
-
-
Schmidt, M.1
Schwarzwaelder, K.2
Bartholomae, C.3
Zaoui, K.4
Ball, C.5
Pilz, I.6
Braun, S.7
Glimm, H.8
Von Kalle, C.9
-
192
-
-
0345144017
-
+ cells from the cord blood of ADA-deficient SCID neonates
-
DOI 10.1038/nm844
-
Schmidt M, et al (2003) Clonality analysis after retroviral-mediated gene transfer to CD34+ cells from the cord blood of ADA-defi cient SCID neonates. Nat Med 9:463-468 (Pubitemid 36460082)
-
(2003)
Nature Medicine
, vol.9
, Issue.4
, pp. 463-468
-
-
Schmidt, M.1
Carbonaro, D.A.2
Speckmann, C.3
Wissler, M.4
Bohnsack, J.5
Elders, M.6
Aronow, B.J.7
Nolta, J.A.8
Kohn, D.B.9
Von Kalle, C.10
-
193
-
-
78650987483
-
High-defi nition mapping of retroviral integration sites defi nes the fate of allogeneic t cells after donor lymphocyte infusion
-
Cattoglio C, et al (2010) High-Defi nition Mapping of Retroviral Integration Sites Defi nes the Fate of Allogeneic T Cells After Donor Lymphocyte Infusion. PLoS One 5:e15688
-
(2010)
PLoS One.
, vol.5
-
-
Cattoglio, C.1
-
195
-
-
77953892366
-
Mobile interspersed repeats are major structural variants in the human genome
-
Huang C, et al (2010) Mobile interspersed repeats are major structural variants in the human genome. Cell 141:1171-1182
-
(2010)
Cell
, vol.141
, pp. 1171-1182
-
-
Huang, C.1
-
196
-
-
79952007022
-
Epigenetic regulation of transposable element derived human gene promoters
-
Huda A, et al (2011) Epigenetic regulation of transposable element derived human gene promoters. Gene 475:39-48
-
(2011)
Gene.
, vol.475
, pp. 39-48
-
-
Huda, A.1
-
197
-
-
77449156754
-
High-level genomic integration epigenetic changes and expression of sleeping beauty transgene
-
Zhu J, et al (2010) High-Level Genomic Integration, Epigenetic Changes, and Expression of Sleeping Beauty Transgene. Biochemistry 49:1507-1521
-
(2010)
Biochemistry
, vol.49
, pp. 1507-1521
-
-
Zhu, J.1
-
198
-
-
78751580443
-
Differentiation of epigenetic modifi cations between transposons and genes
-
Saze H, Kakutani T, (2011) Differentiation of epigenetic modifi cations between transposons and genes. Curr Opin Plant Biol 14:81-87
-
(2011)
Curr. Opin. Plant. Biol.
, vol.14
, pp. 81-87
-
-
Saze, H.1
Kakutani, T.2
-
199
-
-
68149144366
-
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
-
Hollister J, Gaut B, (2009) Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res 19:1419-1428
-
(2009)
Genome Res.
, vol.19
, pp. 1419-1428
-
-
Hollister, J.1
Gaut, B.2
-
200
-
-
67349209262
-
Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins
-
Montoya-Durango D, et al (2009) Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins. Mutat Res 665:20-28
-
(2009)
Mutat. Res.
, vol.665
, pp. 20-28
-
-
Montoya-Durango, D.1
-
201
-
-
70449098000
-
P53 responsive elements in human retrotransposons
-
Harris C, et al (2009) p53 responsive elements in human retrotransposons. Oncogene 28: 3857-3865
-
(2009)
Oncogene
, vol.28
, pp. 3857-3865
-
-
Harris, C.1
-
202
-
-
72949087319
-
A c-Myc regulatory subnetwork from human transposable element sequences
-
Wang J, et al (2009) A c-Myc regulatory subnetwork from human transposable element sequences. Mol Biosyst 5:1831-1839
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1831-1839
-
-
Wang, J.1
-
203
-
-
4644250896
-
Lsh, an epigenetic guardian of repetitive elements
-
DOI 10.1093/nar/gkh821
-
Huang J, et al (2004) Lsh, an epigenetic guardian of repetitive elements. Nucleic Acids Res 32:5019-5028 (Pubitemid 39445488)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.17
, pp. 5019-5028
-
-
Huang, J.1
Fan, T.2
Yan, Q.3
Zhu, H.4
Fox, S.5
Issaq, H.J.6
Best, L.7
Gangi, L.8
Munroe, D.9
Muegge, K.10
-
204
-
-
77954726621
-
Enrichment of short interspersed transposable elements to embryonic stem cell-specifi c hypomethylated gene regions
-
Muramoto H, et al (2010) Enrichment of short interspersed transposable elements to embryonic stem cell-specifi c hypomethylated gene regions. Genes Cells 15:855-865
-
(2010)
Genes. Cells
, vol.15
, pp. 855-865
-
-
Muramoto, H.1
-
205
-
-
55249110647
-
LINE-1 methylation patterns of different loci in normal and cancerous cells
-
Phokaew C, et al (2008) LINE-1 methylation patterns of different loci in normal and cancerous cells. Nucleic Acids Res 36: 5704-5712
-
(2008)
Nucleic. Acids. Res.
, vol.36
, pp. 5704-5712
-
-
Phokaew, C.1
-
206
-
-
0033579468
-
Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation
-
Yates P, et al (1999) Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation. J Biol Chem 274:36357-36361
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 36357-36361
-
-
Yates, P.1
-
207
-
-
78649274945
-
Genome architecture marked by rétrotransposons modulates predisposition to DNA methylation in cancer
-
Estécio M, et al (2010) Genome architecture marked by rétrotransposons modulates predisposition to DNA methylation in cancer. Genome Res 20:1369-1382
-
(2010)
Genome Res.
, vol.20
, pp. 1369-1382
-
-
Estécio, M.1
-
208
-
-
38049164130
-
Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice
-
Howard G, et al (2008) Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice. Oncogene 27:404-408
-
(2008)
Oncogene
, vol.27
, pp. 404-408
-
-
Howard, G.1
-
209
-
-
77956865601
-
All y'all need to know 'bout retroelements in cancer
-
Belancio V, et al (2010) All y'all need to know 'bout retroelements in cancer. Semin Cancer Biol 20:200-210
-
(2010)
Semin. Cancer Biol.
, vol.20
, pp. 200-210
-
-
Belancio, V.1
-
210
-
-
77953889472
-
Natural mutagenesis of human genomes by endogenous retrotransposons
-
Iskow R, et al (2010) Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons. Cell 141:1253-1261
-
(2010)
Cell
, vol.141
, pp. 1253-1261
-
-
Iskow, R.1
-
211
-
-
77956838913
-
Potential mechanisms of endogenous retroviral- mediated genomic instability in human cancer
-
Romanish M, Cohen C, Mager D, (2010) Potential mechanisms of endogenous retroviral- mediated genomic instability in human cancer. Semin Cancer Biol 20:246-253
-
(2010)
Semin. Cancer Biol.
, vol.20
, pp. 246-253
-
-
Romanish, M.1
Cohen, C.2
Mager, D.3
-
212
-
-
0035996667
-
Transposable elements and tumor progression
-
DOI 10.1054/mehy.2001.1545
-
Xu T, Deng K, (2002) Transposable elements and tumor progression. Med Hypotheses 58:293-6 (Pubitemid 34774828)
-
(2002)
Medical Hypotheses
, vol.58
, Issue.4
, pp. 293-296
-
-
Xu, T.H.1
Deng, K.J.2
-
213
-
-
78650223983
-
Long interspersed nuclear element-1 hypomethylation is a potential biomarker for the prediction of response to oral fl uoropyrimidines in microsatellite stable and CpG island methylator phenotype-negative colorectal cancer
-
Kawakami K, (2010) Long interspersed nuclear element-1 hypomethylation is a potential biomarker for the prediction of response to oral fl uoropyrimidines in microsatellite stable and CpG island methylator phenotype-negative colorectal cancer. Cancer Sci 102:166-174
-
(2010)
Cancer Sci.
, vol.102
, pp. 166-174
-
-
Kawakami, K.1
-
214
-
-
77950983736
-
Long interspersed nuclear element 1 hypomethylation is a marker of poor prognosis in stage ia non- small cell lung cancer
-
Saito K, et al (2010) Long Interspersed Nuclear Element 1 Hypomethylation Is a Marker of Poor Prognosis in Stage IA Non- Small Cell Lung Cancer. Clin Cancer Res 16: 2418-2426
-
(2010)
Clin. Cancer Res.
, vol.16
, pp. 2418-2426
-
-
Saito, K.1
-
215
-
-
77952167085
-
Line-1 methylation is inherited in familial testicular cancer kindreds
-
Mirabello L, et al (2010) Line-1 methylation is inherited in familial testicular cancer kindreds. BMC Med Genet 11:77
-
(2010)
BMC Med. Genet.
, vol.11
, pp. 77
-
-
Mirabello, L.1
-
216
-
-
77649083131
-
Implications of line1 methylation for bladder cancer risk in women
-
Wilhelm C, et al (2010) Implications of LINE1 Methylation for Bladder Cancer Risk in Women. Clin Cancer Res 16:1682-1689
-
(2010)
Clin. Cancer Res.
, vol.16
, pp. 1682-1689
-
-
Wilhelm, C.1
-
217
-
-
69949098322
-
Global analysis of DNA methylation and transcription of human repetitive sequences
-
Horard B, et al (2009) Global analysis of DNA methylation and transcription of human repetitive sequences. Epigenetics 4:339-350
-
(2009)
Epigenetics
, vol.4
, pp. 339-350
-
-
Horard, B.1
-
218
-
-
70350227239
-
A modifi ed Sleeping Beauty transposon system that can be used to model a wide variety of human cancers in mice
-
Dupuy A, et al (2009) A modifi ed Sleeping Beauty transposon system that can be used to model a wide variety of human cancers in mice. Cancer Res 69:8150-8156
-
(2009)
Cancer Res.
, vol.69
, pp. 8150-8156
-
-
Dupuy, A.1
-
219
-
-
44049085607
-
Human Pso4 is a metnase (SETMAR)-binding partner that regulates metnase function in DNA repair
-
Beck B, et al (2008) Human Pso4 is a metnase (SETMAR)-binding partner that regulates metnase function in DNA repair. J Biol Chem 283:9023-9030
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 9023-9030
-
-
Beck, B.1
|