Pack-MULE transposable elements mediate gene evolution in plants

Nature

Volumn 431, Issue 7008, 2004, Pages 569-573

  Jiang, Ning ^a,c   Bao, Zhirong ^b,d   Zhang, Xiaoyu ^a,e   Eddy, Sean R ^b   Wessler, Susan R ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b WASHINGTON UNIVERSITY   (United States)

^c MICHIGAN STATE UNIVERSITY   (United States)

^d UNIVERSITY OF WASHINGTON   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DATA REDUCTION; DNA; PLANTS (BOTANY);

CELLULAR GENES; MAIZE; MUTATOR-LIKE TRANSPOSABLE ELEMENTS (MULE);

GENES;

GENOMIC DNA;

EVOLUTION; PLANT;

AMINO ACID SEQUENCE; ARTICLE; CHIMERA; CHROMOSOMAL LOCALIZATION; EUKARYOTE; GENE EXPRESSION; GENETIC ANALYSIS; MOLECULAR EVOLUTION; NONHUMAN; OPEN READING FRAME; PACK MUTATOR LIKE TRANSPOSABLE ELEMENT; PLANT; PLANT CHROMOSOME; PLANT GENETICS; PRIORITY JOURNAL; RICE; SEQUENCE ANALYSIS; TRANSPOSON; GENE; GENETICS; GENOME; GENOMICS; MUTAGENESIS; NUCLEOTIDE SEQUENCE;

ARABIDOPSIS; EMBRYOPHYTA; EUKARYOTA; TRANSPOSONS; ZEA MAYS;

BASE SEQUENCE; DNA TRANSPOSABLE ELEMENTS; EVOLUTION, MOLECULAR; GENES, PLANT; GENOME, PLANT; GENOMICS; MUTAGENESIS; OPEN READING FRAMES; ORYZA SATIVA;

EID: 4944239027     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature02953     Document Type: Article

References (24)

1. Lisch, D. Mutator transposons. Trends Plant Sci. 7, 498-504 (2002).
2. Walbot, V. & Rudenko, G. N. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M.) 533-564 (American Society of Microbiology Press, Washington, D.C., 2002).
3. Chalvet, F., Grimaldi, C., Kaper, F., Langin, T. & Daboussi, M. J. Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum. Mol. Biol. Evol. 20, 1362-1375 (2003).
4. Talbert, L. E. & Chandler, V. L. Characterization of a highly conserved sequence related to mutator transposable elements in maize. Mol. Biol. Evol. 5, 519-529 (1988).
5. Yu, Z., Wright, S. I. & Bureau, T. E. Mutator-like elements in Arabidopsis thaliana. Structure, diversity and evolution. Genetics 156, 2019-2031 (2000).
6. Turcotte, K., Srinivasan, S. & Bureau, T. Survey of transposable elements from rice genomic sequences. Plant J. 25, 169-179 (2001).
7. Bennetzen, J. L. & Springer, P. S. The generation of mutator transposable element subfamilies in maize. Theor. Appl. Genet. 87, 657-667 (1994).
8. Goff, S. A. et al. A draft sequence of the rice genome (Oryza saliva L. ssp. japonica). Science 296, 92-100 (2002).
9. Normale, D. & Pennisi, E. The rice genome. Rice: boiled down to bare essentials. Science 296, 32-36 (2002).
10. Yu, J. et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296, 79-92 (2002).
11. Bao, Z. & Eddy, S. R. Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res. 12, 1269-1276 (2002).
12. Cresse, A. D., Hulbert, S. H., Brown, W. E., Lucas, J. R. & Bennetzen, J. L. Mu1-related transposable elements of maize preferentially insert into low copy number DNA. Genetics 140, 315-324 (1995).
13. Hanley, S. et al. Identification of transposon-tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays. Plant J. 23, 557-566 (2000).
14. Le, Q. H., Wright, S., Yu, Z. & Bureau, T. Transposon diversity in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 97, 7376-7381 (2000).
15. Taylor, L. P. & Walbot, V. A deletion adjacent to the maize transposable element Mu-1 accompanies loss of Adh 1 expression. EMBO J. 4, 369-376 (1985).
16. Levy, A. A. & Walbot, V. Molecular analysis of the loss of somatic instability in the bz2-mu1 allele of maize. Mol. Gen. Genet. 229, 147-151 (1991).
17. Sasaki, T. et al. The genome sequence and structure of rice chromosome 1. Nature 420, 312-316 (2002).
18. The Rice Chromosome 10 Sequencing Consortium. In-depth view of structure, activity, and evolution of rice chromosome 10. Science 300, 1566-1599 (2003).
19. Kikuchi, S. et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301, 376-379 (2003).
20. Koller, A. et al. Proteomic survey of metabolic pathways in rice. Proc. Natl Acad. Sci. USA 99, 11969-11974 (2002).
21. Moran, J. V., DeBerardinis, R. J. & Kazazian, H. H. Jr. Exon shuffling by L1 retro transposition. Science 283, 1530-1534 (1999).
22. Emerson, J. J., Kaessmann, H., Betran, E. & Long, M. Extensive gene traffic on the mammalian X chromosome. Science 303, 537-540 (2004).
23. Jiang, N. et al. An active DNA transposon in rice. Nature 421, 163-167 (2003).
24. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. MEGA2: Molecular Evolutionary Genetics Analysis software (Arizona State Univ., Tempe, Arizona, 2001).