메뉴 건너뛰기




Volumn 106, Issue 4, 2011, Pages 520-530

Analysis of plant diversity with retrotransposon-based molecular markers

Author keywords

IRAP and REMAP; molecular marker; phylogeny; RBIP; retrotransposon; SSAP

Indexed keywords

GENETIC DIFFERENTIATION; GENETIC MARKER; GENOME; MOLECULAR ANALYSIS; PHYLOGENY; POLYMORPHISM; POPULATION STRUCTURE;

EID: 79953078781     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2010.93     Document Type: Review
Times cited : (229)

References (108)
  • 1
    • 33645415035 scopus 로고    scopus 로고
    • TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports
    • Antonius-Klemola K, Kalendar R, Schulman AH (2006). TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports. Theor Appl Genet 112:999-1008.
    • (2006) Theor Appl. Genet. , vol.112 , pp. 999-1008
    • Antonius-Klemola, K.1    Kalendar, R.2    Schulman, A.H.3
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 0036667682 scopus 로고    scopus 로고
    • Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C. E. Hubbard (Poaceae)
    • Baumel A, Ainouche M, Kalendar R, Schulman AH (2002). Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C. E. Hubbard (Poaceae). Mol Biol Evol 19:1218-1227.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1218-1227
    • Baumel, A.1    Ainouche, M.2    Kalendar, R.3    Schulman, A.H.4
  • 5
    • 0347270417 scopus 로고    scopus 로고
    • Identification and genomic distribution of gypsy like retrotransposons in Citrus and Poncirus
    • DOI 10.1007/s00122-003-1382-1
    • Bernet GP, Asins MJ (2004). Identification and genomic distribution of gypsy like retrotransposons in Citrus and Poncirus. Theor Appl Genet 108:121-130. (Pubitemid 38097989)
    • (2003) Theoretical and Applied Genetics , vol.108 , Issue.1 , pp. 121-130
    • Bernet, G.P.1    Asins, M.J.2
  • 6
    • 62749107115 scopus 로고    scopus 로고
    • An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes
    • Bertioli DJ, Moretzsohn MC, Madsen LH, Sandal N, Leal-Bertioli SC, Guimarães PM et al. (2009). An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics 10:45.
    • (2009) BMC Genomics , vol.10 , pp. 45
    • Bertioli, D.J.1    Moretzsohn, M.C.2    Madsen, L.H.3    Sandal, N.4    Leal-Bertioli, S.C.5    Guimarães, P.M.6
  • 7
    • 0036010790 scopus 로고    scopus 로고
    • A high-density cytogenetic map of the Aegilops tauschii genome incorporating retrotransposons and defense-related genes: Insights into cereal chromosome structure and function
    • DOI 10.1023/A:1014831511810
    • Boyko E, Kalendar R, Korzun V, Korol A, Schulman AH, Gill BS (2002). A high-density cytogenetic map of the Aegilops tauschii genome incorporating retrotransposons and defense related genes: insights into cereal chromosome structure and function. Plant Mol Biol 48:767-790. (Pubitemid 34415984)
    • (2002) Plant Molecular Biology , vol.48 , Issue.5-6 , pp. 767-790
    • Boyko, E.1    Kalendar, R.2    Korzun, V.3    Fellers, J.4    Korol, A.5    Schulman, A.H.6    Gill, B.S.7
  • 9
    • 0035192313 scopus 로고    scopus 로고
    • The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species
    • DOI 10.1006/mpev.2001.1008
    • Bretó MP, Ruiz C, Pina JA, Asíns MJ (2001). The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species. Mol Phylogenet Evol 21:285-293. (Pubitemid 33102145)
    • (2001) Molecular Phylogenetics and Evolution , vol.21 , Issue.2 , pp. 285-293
    • Breto, M.P.1    Ruiz, C.2    Pina, J.A.3    Asins, M.J.4
  • 11
    • 14744277081 scopus 로고
    • DNA amplification fingerprinting using very short arbitrary oligonucleotide primers
    • Caetano-Anollés G, Bassam BJ, Gresshoff PM (1991). DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Biotechnology 9:553-557.
    • (1991) Biotechnology , vol.9 , pp. 553-557
    • Caetano-Anollés, G.1    Bassam, B.J.2    Gresshoff, P.M.3
  • 12
    • 33644512715 scopus 로고    scopus 로고
    • Retrotransposon-microsatellite amplified polymorphism (REMAP) markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea)
    • Chadha S, Gopalakrishna T (2005). Retrotransposon-microsatellite amplified polymorphism (REMAP) markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea). Genome 48:943-945.
    • (2005) Genome , vol.48 , pp. 943-945
    • Chadha, S.1    Gopalakrishna, T.2
  • 15
    • 0036814150 scopus 로고    scopus 로고
    • Evolutionary relationships among rice species with AA genome based on SINE insertion analysis
    • DOI 10.1266/ggs.77.323
    • Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E (2002). Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes Genet Syst 77:323-334. (Pubitemid 35416294)
    • (2002) Genes and Genetic Systems , vol.77 , Issue.5 , pp. 323-334
    • Cheng, C.1    Tsuchimoto, S.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 16
    • 0019719393 scopus 로고
    • Doubled haploids for studying the inheritance of quantitative characters
    • Choo T (1981). Doubled haploids for studying the inheritance of quantitative characters. Genetics 99:525-540. (Pubitemid 12043536)
    • (1981) Genetics , vol.99 , Issue.3-4 , pp. 525-540
    • Choo, T.M.1
  • 18
  • 19
    • 0031782964 scopus 로고    scopus 로고
    • Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea
    • DOI 10.1007/s004380050865
    • Ellis THN, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998). Tyl-copia class retrotransposon insertion site polymorphism for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19. (Pubitemid 28502216)
    • (1998) Molecular and General Genetics , vol.260 , Issue.1 , pp. 9-19
    • Ellis, T.H.N.1    Poyser, S.J.2    Knox, M.R.3    Vershinin, A.V.4    Ambrose, M.J.5
  • 20
    • 0024505998 scopus 로고
    • Eukaryotic transposable elements and genome evolution
    • Finnegan DJ (1989). Eukaryotic transposable elements and genome evolution. Trends Genet 5:103-1077.
    • (1989) Trends Genet. , vol.5 , pp. 103-1077
    • Finnegan, D.J.1
  • 21
    • 0141905885 scopus 로고    scopus 로고
    • A microarray-based high throughput molecular marker genotyping method: The tagged microarray marker (TAM) approach
    • Flavell AJ, Bolshakov VN, Booth A, Jing R, Russell J, Ellis TH et al. (2003). A microarray-based high throughput molecular marker genotyping method: the tagged microarray marker (TAM) approach. Nucleic Acids Res 31: e115.
    • (2003) Nucleic Acids Res. , vol.31
    • Flavell, A.J.1    Bolshakov, V.N.2    Booth, A.3    Jing, R.4    Russell, J.5    Ellis, T.H.6
  • 23
    • 0032409406 scopus 로고    scopus 로고
    • Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis
    • Flavell AJ, Knox MR, Pearce SR, Ellis THN (1998). Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J 16:643-650.
    • (1998) Plant J. , vol.16 , pp. 643-650
    • Flavell, A.J.1    Knox, M.R.2    Pearce, S.R.3    Ellis, T.H.N.4
  • 24
  • 25
    • 0031439952 scopus 로고    scopus 로고
    • The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses
    • Grandbastien MA, Lucas H, Morel JB, Mhiri C, Verbhettes S, Casacuberta JM (1997). The expression of the tobacco Tnt1 retrotransposon is linked to plant defence response. Genetica 100:241-252. (Pubitemid 28034771)
    • (1997) Genetica , vol.100 , Issue.1-3 , pp. 241-252
    • Grandbastien, M.-A.1    Lucas, H.2    Morel, J.-B.3    Mhiri, C.4    Vernhettes, S.5    Casacuberta, J.M.6
  • 27
    • 2442697991 scopus 로고    scopus 로고
    • Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four Triticeae genomes
    • DOI 10.1104/pp.103.038083
    • Gu YQ, Coleman-Derr D, Kong X, Anderson OD (2004). Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four Triticeae genomes. Plant Physiol 135:459-470. (Pubitemid 38653691)
    • (2004) Plant Physiology , vol.135 , Issue.1 , pp. 459-470
    • Gu, Y.Q.1    Coleman-Derr, D.2    Kong, X.3    Anderson, O.D.4
  • 28
    • 21544440440 scopus 로고    scopus 로고
    • Retrotransposon populations of Vicia species with varying genome size
    • DOI 10.1007/s00438-005-1141-x
    • Hill P, Burford D, Martin DMA, Flavell AJ (2005). Retrotransposon populations of Vicia species with varying genome size. Mol Genet Genomics 273:371-381. (Pubitemid 40922402)
    • (2005) Molecular Genetics and Genomics , vol.273 , Issue.5 , pp. 371-381
    • Hill, P.1    Burford, D.2    Martin, D.M.A.3    Flavell, A.J.4
  • 30
    • 0013937415 scopus 로고
    • A molecular approach to the study of genic heterozygosity in natural populations. I. The number of alleles at different loci in Drosophila pseudoobscura
    • Hubby JL, Lewontin RC (1966). A molecular approach to the study of genic heterozygosity in natural populations. I. The number of alleles at different loci in Drosophila pseudoobscura. Genetics 54:577-594.
    • (1966) Genetics , vol.54 , pp. 577-594
    • Hubby, J.L.1    Lewontin, R.C.2
  • 31
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: A solid state technology for sequence information independent genotyping
    • Jaccoud D, Peng K, Feinstein D, Kilian A (2001). Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 29: E25.
    • (2001) Nucleic Acids Res. , vol.29
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 32
    • 34347232737 scopus 로고    scopus 로고
    • The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms
    • DOI 10.1038/nprot.2006.408, PII NPROT.2006.408
    • Jing R, Bolshakov V, Flavell AJ (2007). The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms. Nat Protocol 2:168-177. (Pubitemid 47040080)
    • (2007) Nature Protocols , vol.2 , Issue.1 , pp. 168-177
    • Jing, R.1    Bolshakov, V.2    Flavell, A.J.3
  • 33
    • 31544460092 scopus 로고    scopus 로고
    • Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in pisum species
    • DOI 10.1534/genetics.105.045112
    • Jing R, Knox MR, Lee JM, Vershinin AV, Ambrose M, Ellis TH et al. (2005). Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species. Genetics 171:741-752. (Pubitemid 43156461)
    • (2005) Genetics , vol.171 , Issue.2 , pp. 741-752
    • Jing, R.1    Knox, M.R.2    Lee, J.M.3    Vershinin, A.V.4    Ambrose, M.5    Ellis, T.H.N.6    Flavell, A.J.7
  • 34
    • 77949277584 scopus 로고    scopus 로고
    • The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis
    • Jing R, Vershinin A, Grzebyta J, Shaw P, Smỳkal P, Marshall D et al. (2010). The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis. BMC Evol Biol 10:44.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 44
    • Jing, R.1    Vershinin, A.2    Grzebyta, J.3    Shaw, P.4    Smỳkal, P.5    Marshall, D.6
  • 35
    • 8644286276 scopus 로고    scopus 로고
    • Evolutionary impact of human Alu repetitive elements
    • DOI 10.1016/j.gde.2004.08.008, PII S0959437X04001522
    • Jurka J (2004). Evolutionary impact of human Alu repetitive elements. Curr Opin Genet Dev 14:603-608. (Pubitemid 39505363)
    • (2004) Current Opinion in Genetics and Development , vol.14 , Issue.6 , pp. 603-608
    • Jurka, J.1
  • 37
    • 78649631944 scopus 로고    scopus 로고
    • iPBS: A universal method for DNA fingerprinting and retrotransposon isolation
    • doi:10.1007/s00122-010-1398-2
    • Kalendar R, Antonius K, Smykal P, Schulman AH (2010). iPBS: A universal method for DNA fingerprinting and retrotransposon isolation. Theor Appl Genet (doi:10.1007/s00122-010-1398-2).
    • (2010) Theor Appl. Genet.
    • Kalendar, R.1    Antonius, K.2    Smykal, P.3    Schulman, A.H.4
  • 38
    • 0032943978 scopus 로고    scopus 로고
    • IRAP and REMAP: Two new retrotransposon-based DNA fingerprinting techniques
    • DOI 10.1007/s001220051124
    • Kalendar R, Grob T, Regina M, Suoniemi A, Schulman AH (1999). IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor Appl Genet 98:704-711. (Pubitemid 29212070)
    • (1999) Theoretical and Applied Genetics , vol.98 , Issue.5 , pp. 704-711
    • Kalendar, R.1    Grob, T.2    Regina, M.3    Suoniemi, A.4    Schulman, A.5
  • 39
    • 34548163098 scopus 로고    scopus 로고
    • IRAP and REMAP for retrotransposon-based genotyping and fingerprinting
    • Kalendar R, Schulman AH (2006). IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nature Protoc 1:2478-2484.
    • (2006) Nature Protoc. , vol.1 , pp. 2478-2484
    • Kalendar, R.1    Schulman, A.H.2
  • 41
    • 1942421723 scopus 로고    scopus 로고
    • Large Retrotransposon Derivatives: Abundant, Conserved but Nonautonomous Retroelements of Barley and Related Genomes
    • DOI 10.1534/genetics.166.3.1437
    • Kalendar R, Vicient CM, Peleg O, Anamthawat-Jónsson K, Bolshoy A, Schulman AH (2004). Large retrotransposon derivatives: abundance, conserved and non-autonomous retroelements of barley and related genomes. Genetics 166:1437-1450. (Pubitemid 38507061)
    • (2004) Genetics , vol.166 , Issue.3 , pp. 1437-1450
    • Kalendar, R.1    Vicient, C.M.2    Peleg, O.3    Anamthawat-Jonsson, K.4    Bolshoy, A.5    Schulman, A.H.6
  • 43
    • 1242297006 scopus 로고    scopus 로고
    • Emergence of vertebrate retroviruses and envelope capture
    • DOI 10.1016/j.virol.2003.09.026
    • Kim FJ, Battini JL, Manel N, Sitbon M (2004). Emergence of vertebrate retroviruses and envelope capture. Virology 318:183-191. (Pubitemid 38234272)
    • (2004) Virology , vol.318 , Issue.1 , pp. 183-191
    • Kim, F.J.1    Battini, J.-L.2    Manel, N.3    Sitbon, M.4
  • 44
    • 69449083571 scopus 로고    scopus 로고
    • High-throughput retrotransposon-based fluorescent markers: Improved information content and allele discrimination
    • Knox M, Moreau C, Lipscombe J, Baker D, Ellis N (2009). High-throughput retrotransposon-based fluorescent markers: improved information content and allele discrimination. Plant Methods 5:10.
    • (2009) Plant Methods , vol.5 , pp. 10
    • Knox, M.1    Moreau, C.2    Lipscombe, J.3    Baker, D.4    Ellis, N.5
  • 45
    • 2442649413 scopus 로고    scopus 로고
    • Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat
    • DOI 10.1023/B:PLAN.0000028768.21587.dc
    • Kong XY, Gu YQ, You FM, Dubcovsky J, Anderson OD (2004). Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat. Plant Mol Biol 54:55-69. (Pubitemid 39001406)
    • (2004) Plant Molecular Biology , vol.54 , Issue.1 , pp. 55-69
    • Kong, X.-Y.1    Gu, Y.Q.2    You, F.M.3    Dubcovsky, J.4    Anderson, O.D.5
  • 46
    • 0038344689 scopus 로고    scopus 로고
    • Retroelements, transposons and methylation status in the genome of oil palm (Elaeis guineensis) and the relationship to somaclonal variation
    • DOI 10.1023/A:1023942309092
    • Kubis SE, Castilho MMF, Vershinin AV, Heslop-Harrison JS (2003). Retroelements, retrotransposons and methylation status in the genome of oil palm (Elaeis guineensis) and the relationship to somaclonal variation. Plant Mol Biol 52:69-79. (Pubitemid 36708406)
    • (2003) Plant Molecular Biology , vol.52 , Issue.1 , pp. 69-79
    • Kubis, S.E.1    Castilho, A.M.M.F.2    Vershinin, A.V.3    Heslop-Harrison, J.S.4
  • 47
    • 24044450094 scopus 로고    scopus 로고
    • Rim 2/Hipa CACTA transposon display: A new genetic marker technique in Oryza species
    • Kwon SJ, Park KC, Kim JH, Lee JK, Kim NS (2005). Rim 2/Hipa CACTA transposon display: a new genetic marker technique in Oryza species. BMC Genet 6:15.
    • (2005) BMC Genet. , vol.6 , pp. 15
    • Kwon, S.J.1    Park, K.C.2    Kim, J.H.3    Lee, J.K.4    Kim, N.S.5
  • 48
    • 33746740468 scopus 로고    scopus 로고
    • A first linkage map of globe artichoke (Cynara cardunculus varscolymus L) based on AFLP, S-SAP, M-AFLP and microsatellite markers
    • Lanteri S, Acquadro A, Comino C, Mauro R, Mauromicale G, Portis E (2006). A first linkage map of globe artichoke (Cynara cardunculus varscolymus L) based on AFLP, S-SAP, M-AFLP and microsatellite markers. Theor Appl Genet 112:1532-1542.
    • (2006) Theor Appl. Genet. , vol.112 , pp. 1532-1542
    • Lanteri, S.1    Acquadro, A.2    Comino, C.3    Mauro, R.4    Mauromicale, G.5    Portis, E.6
  • 49
    • 0025516495 scopus 로고
    • A copia-like element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis
    • Lee DL, Ellis TH, Turner L, Hellens RP, Cleary WG (1990). A copia-like element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis. Plant Mol Biol 15:707-722.
    • (1990) Plant Mol. Biol. , vol.15 , pp. 707-722
    • Lee, D.L.1    Ellis, T.H.2    Turner, L.3    Hellens, R.P.4    Cleary, W.G.5
  • 50
    • 0043124416 scopus 로고    scopus 로고
    • Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques
    • DOI 10.1007/s00438-003-0850-2
    • Leigh F, Kalendar R, Lea V, Lee D, Donini P, Schulman AH (2003). Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques. Mol Genet Genomics 269:464-474. (Pubitemid 36976154)
    • (2003) Molecular Genetics and Genomics , vol.269 , Issue.4 , pp. 464-474
    • Leigh, F.1    Kalendar, R.2    Lea, V.3    Lee, D.4    Donini, P.5    Schulman, A.H.6
  • 51
    • 79953087792 scopus 로고    scopus 로고
    • Retrotransposon activation followed by rapid repression in introgressed rice plants
    • Liu B, Wendel JF (2000). Retrotransposon activation followed by rapid repression in introgressed rice plants. Genome Res 14:860-869.
    • (2000) Genome Res. , vol.14 , pp. 860-869
    • Liu, B.1    Wendel, J.F.2
  • 52
    • 36349028715 scopus 로고    scopus 로고
    • Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits
    • DOI 10.1139/G07-067
    • Lou Q, Chen J (2007). Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits. Genome 50:802-810. (Pubitemid 350144747)
    • (2007) Genome , vol.50 , Issue.9 , pp. 802-810
    • Lou, Q.1    Chen, J.2
  • 53
    • 38349101340 scopus 로고    scopus 로고
    • Repetitive DNA in the pea (Pisum sativum L.) genome: Comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
    • Macas J, Neumann P, Navrátilová A (2007). Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula. BMC Genomics 8:427.
    • (2007) BMC Genomics , vol.8 , pp. 427
    • Macas, J.1    Neumann, P.2    Navrátilová, A.3
  • 54
    • 0033764322 scopus 로고    scopus 로고
    • Application of BARE-1 retrotransposon markers to map a major resistance gene for net blotch in barley
    • Manninen O, Kalendar R, Robinson J, Schulman AH (2000). Application of BARE-1 retrotransposon markers to map a major resistance gene for net blotch in barley. Mol Gen Genet 264:325-334.
    • (2000) Mol. Gen. Genet. , vol.264 , pp. 325-334
    • Manninen, O.1    Kalendar, R.2    Robinson, J.3    Schulman, A.H.4
  • 55
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock B (1984). The significance of responses of the genome to challenge. Science 226:792-801. (Pubitemid 15200674)
    • (1984) Science , vol.226 , Issue.4676 , pp. 792-801
    • McClintock, B.1
  • 56
    • 0027320058 scopus 로고
    • Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans
    • Meyer W, Mitchell TG, Freedman EZ, Vilgalys R 1993. Hybridization probes for conventional DNA ngerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. J Clin Microbiol 31:2274-2280. (Pubitemid 23254186)
    • (1993) Journal of Clinical Microbiology , vol.31 , Issue.9 , pp. 2274-2280
    • Meyer, W.1    Mitchell, T.G.2    Freedman, E.Z.3    Vilgalys, R.4
  • 58
    • 55249105198 scopus 로고    scopus 로고
    • Characterization of ten novel Ty1/copia-like retrotransposon families of the grapevine genome
    • Moisy C, Garrison KE, Meredith CP, Pelsy F (2008). Characterization of ten novel Ty1/copia-like retrotransposon families of the grapevine genome. BMC Genomics 9:469.
    • (2008) BMC Genomics , vol.9 , pp. 469
    • Moisy, C.1    Garrison, K.E.2    Meredith, C.P.3    Pelsy, F.4
  • 59
    • 33745812367 scopus 로고    scopus 로고
    • Characterization of chromosome-specific S-SAP markers and their use in studying genetic diversity in Aegilops species
    • DOI 10.1139/G05-109
    • Nagy ED, Molnár I, Schneider A, Kovács G, Molnár-Láng M (2006). Characterization of chromosome-specific S-SAP markers and their use in studying genetic diversity in Aegilops species. Genome 49:289-296. (Pubitemid 44031285)
    • (2006) Genome , vol.49 , Issue.4 , pp. 289-296
    • Nagy, E.D.1    Molnar, I.2    Schneider, A.3    Kovacs, G.4    Molnar-Lang, M.5
  • 60
    • 69249232105 scopus 로고    scopus 로고
    • Quantification and organization of WIS2-1A and BARE1 retrotransposons in different genomes of Triticum and Aegilops species
    • Pagnotta MA, Mondini L, Porceddu E (2009). Quantification and organization of WIS2-1A and BARE1 retrotransposons in different genomes of Triticum and Aegilops species. Mol Genet Genomics 282:245-255.
    • (2009) Mol. Genet. Genomics , vol.282 , pp. 245-255
    • Pagnotta, M.A.1    Mondini, L.2    Porceddu, E.3
  • 62
    • 73949088815 scopus 로고    scopus 로고
    • Insertion site-based polymorphism markers open new perspectives for genome saturation and markerassisted selection in wheat
    • Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant JP et al. (2010). Insertion site-based polymorphism markers open new perspectives for genome saturation and markerassisted selection in wheat. Plant Biotechnol J 8:196-210.
    • (2010) Plant Biotechnol. J. , vol.8 , pp. 196-210
    • Paux, E.1    Faure, S.2    Choulet, F.3    Roger, D.4    Gauthier, V.5    Martinant, J.P.6
  • 63
    • 0029986858 scopus 로고    scopus 로고
    • The Tyl-copia group of retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localisation
    • Pearce SR, Harrison G, Li D, Heslop-Harrison JS, Kumar A, Flavell AJ (1996). The Tyl-copia group of retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal localisation. Mol Gen Genet 205:305-315.
    • (1996) Mol. Gen. Genet. , vol.205 , pp. 305-315
    • Pearce, S.R.1    Harrison, G.2    Li, D.3    Heslop-Harrison, J.S.4    Kumar, A.5    Flavell, A.J.6
  • 64
    • 0033799423 scopus 로고    scopus 로고
    • Pea Ty1-copia group retrotransposons: Transpositional activity and use as markers to study genetic diversity in Pisum
    • Pearce SR, Knox M, Ellis TH, Flavell AJ, Kumar A (2000). Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum. Mol Gen Genet 263:898-907.
    • (2000) Mol. Gen. Genet. , vol.263 , pp. 898-907
    • Pearce, S.R.1    Knox, M.2    Ellis, T.H.3    Flavell, A.J.4    Kumar, A.5
  • 65
    • 0033197649 scopus 로고    scopus 로고
    • Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies
    • Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Ellis THN, Flavell AJ (1999). Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. Plant J 19:711-717.
    • (1999) Plant J. , vol.19 , pp. 711-717
    • Pearce, S.R.1    Stuart-Rogers, C.2    Knox, M.R.3    Kumar, A.4    Ellis, T.H.N.5    Flavell, A.J.6
  • 66
    • 36348982225 scopus 로고    scopus 로고
    • Untranslated leader region polymorphism of Tvv1, a retrotransposon family, is a novel marker useful for analyzing genetic diversity and relatedness in the genus Vitis
    • DOI 10.1007/s00122-007-0643-9
    • Pelsy F (2007). Untranslated leader region polymorphism of Tvv1, a retrotransposon family, is a novel marker useful for analyzing genetic diversity and relatedness in the genus Vitis. Theor Appl Genet 116:15-27. (Pubitemid 350159723)
    • (2007) Theoretical and Applied Genetics , vol.116 , Issue.1 , pp. 15-27
    • Pelsy, F.1
  • 68
    • 23944459816 scopus 로고    scopus 로고
    • Development of crop-specific transposable element (SINE) markers for studying gene flow from oilseed rape to wild radish
    • DOI 10.1007/s00122-005-2017-5
    • Prieto JL, Pouilly N, Jenczewski E, Deragon JM, Chevre AM (2005). Development of crop-specific transposable element (SINE) markers for studying gene flow from oilseed rape to wild radish. Theor Appl Genet 111:446-455. (Pubitemid 41204228)
    • (2005) Theoretical and Applied Genetics , vol.111 , Issue.3 , pp. 446-455
    • Prieto, J.L.1    Pouilly, N.2    Jenczewski, E.3    Deragon, J.M.4    Chevre, A.M.5
  • 69
    • 1542344830 scopus 로고    scopus 로고
    • Retrotransposon-based molecular markers for linkage and genetic diversity analysis in wheat
    • DOI 10.1007/s00438-003-0960-x
    • Queen RA, Gribbon BM, James C, Jack P, Flavell AJ (2004). Retrotransposon-based molecular markers for linkage and genetic diversity analysis in wheat. Mol Genet Genomics 271:91-97. (Pubitemid 38299689)
    • (2004) Molecular Genetics and Genomics , vol.271 , Issue.1 , pp. 91-97
    • Queen, R.A.1    Gribbon, B.M.2    James, C.3    Jack, P.4    Flavell, A.J.5
  • 70
    • 0036861524 scopus 로고    scopus 로고
    • Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes
    • Ramakrishna W, Dubcovsky J, Park YJ, Busso C, Emberton J, SanMiguel P et al. (2002). Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics 162:1389-1400. (Pubitemid 35417528)
    • (2002) Genetics , vol.162 , Issue.3 , pp. 1389-1400
    • Ramakrishna, W.1    Dubcovsky, J.2    Park, Y.-J.3    Busso, C.4    Emberton, J.5    SanMiguel, P.6    Bennetzen, J.L.7
  • 71
    • 0038581538 scopus 로고    scopus 로고
    • In depth view of structure, activity, and evolution of rice chromosome 10
    • Rice Chromosome 10 Sequencing Consortium
    • Rice Chromosome 10 Sequencing Consortium (2003). In depth view of structure, activity, and evolution of rice chromosome 10. Science 300:1566-1569.
    • (2003) Science , vol.300 , pp. 1566-1569
  • 72
    • 27144443396 scopus 로고    scopus 로고
    • Advent of a new retrotransposon structure: The long form of the Veju elements
    • DOI 10.1007/s10709-005-7926-3
    • Sabot F, Sourdille P, Bernard M (2005). Advent of a new retrotransposon structure: the long form of the Veju elements. Genetica 125:325-332. (Pubitemid 41507167)
    • (2005) Genetica , vol.125 , Issue.2-3 , pp. 325-332
    • Sabot, F.1    Sourdille, P.2    Bernard, M.3
  • 73
    • 48849101870 scopus 로고    scopus 로고
    • Retroelement insertional polymorphisms, diversity and phylogeography within diploid, D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in Iran
    • Saeidi H, Rahiminejad MR, Heslop-Harrison JS (2008). Retroelement insertional polymorphisms, diversity and phylogeography within diploid, D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in Iran. Ann Bot 101:855-861.
    • (2008) Ann. Bot. , vol.101 , pp. 855-861
    • Saeidi, H.1    Rahiminejad, M.R.2    Heslop-Harrison, J.S.3
  • 74
    • 0029346939 scopus 로고
    • Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers
    • Salimath SS, de Oliveira AC, Godwin ID, Bennetzen JL (1995). Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers. Genome 38:757-763.
    • (1995) Genome , vol.38 , pp. 757-763
    • Salimath, S.S.1    De Oliveira, A.C.2    Godwin, I.D.3    Bennetzen, J.L.4
  • 78
    • 2542424855 scopus 로고    scopus 로고
    • The application of LTR retrotransposons as molecular markers in plants
    • Schulman AH, Flavell AJ, Ellis THN (2004). The application of LTR retrotransposons as molecular markers in plants. Methods Mol Biol 260:145-173.
    • (2004) Methods Mol. Biol. , vol.260 , pp. 145-173
    • Schulman, A.H.1    Flavell, A.J.2    Ellis, T.H.N.3
  • 79
    • 23844546888 scopus 로고    scopus 로고
    • A movable feast: Diverse retrotransposons and their contribution to barley genome dynamics
    • DOI 10.1159/000084993
    • Schulman AH, Kalendar R (2005). A movable feast: diverse retrotransposons and their contribution to barley genome dynamics. Cytogenet Genome Res 110:598-605. (Pubitemid 41159937)
    • (2005) Cytogenetic and Genome Research , vol.110 , Issue.1-4 , pp. 598-605
    • Schulman, A.H.1    Kalendar, R.2
  • 81
    • 0033852426 scopus 로고    scopus 로고
    • A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
    • DOI 10.1101/gr.10.7.908
    • Shirasu K, Schulman AH, Lahaye T, Schulze-Lefert P (2000). A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res 10:908-915. (Pubitemid 30608628)
    • (2000) Genome Research , vol.10 , Issue.7 , pp. 908-915
    • Shirasu, K.1    Schulman, A.H.2    Lahaye, T.3    Schulze-Lefert, P.4
  • 82
    • 33748848894 scopus 로고    scopus 로고
    • Development of an efficient retrotransposon-based fingerprinting method for rapid pea variety identification
    • Smỳkal P (2006). Development of an efficient retro transposon based finger printing method for rapid pea variety identification. J Appl Genet 47:221-230. (Pubitemid 44423444)
    • (2006) Journal of Applied Genetics , vol.47 , Issue.3 , pp. 221-230
    • Smykal, P.1
  • 83
    • 33745873501 scopus 로고    scopus 로고
    • Quantification of the retrotransposon BARE-1 reveals the dynamic nature of the barley genome
    • DOI 10.1139/G05-119
    • Soleimani VD, Baum BR, Johnson DA (2006). Quantification of the retrotransposon BARE1 reveals the dynamic nature of the barley genome. Genome 49:389-396. (Pubitemid 44031296)
    • (2006) Genome , vol.49 , Issue.4 , pp. 389-396
    • Soleimani, V.D.1    Baum, B.R.2    Johnson, D.A.3
  • 84
    • 0032033103 scopus 로고    scopus 로고
    • Gypsy-like retrotransposons are widespread in the plant kingdom
    • DOI 10.1046/j.1365-313X.1998.00071.x
    • Suoniemi A, Tanskanen J, Schulman AH (1998). Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J 13:699-705. (Pubitemid 28178496)
    • (1998) Plant Journal , vol.13 , Issue.5 , pp. 699-705
    • Suoniemi, A.1    Tanskanen, J.2    Schulman, A.H.3
  • 85
    • 34548862848 scopus 로고    scopus 로고
    • Sequence specific amplification polymorphisms (SSAP): A multi-locus approach for analysing transposon insertions
    • Syed NH, Flavell AJ (2007). Sequence specific amplification polymorphisms (SSAP): a multi-locus approach for analysing transposon insertions. Nat Protoc 1:2746-2752.
    • (2007) Nat. Protoc. , vol.1 , pp. 2746-2752
    • Syed, N.H.1    Flavell, A.J.2
  • 87
    • 17444395610 scopus 로고    scopus 로고
    • Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR
    • DOI 10.1007/s00122-004-1837-z
    • Tam SM, Mhiri C, Vogelaar A, Kerkveld M, Pearce SR, Grandbastien MA (2005). Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theor Appl Genet 110:819-831. (Pubitemid 40534165)
    • (2005) Theoretical and Applied Genetics , vol.110 , Issue.5 , pp. 819-831
    • Tam, S.M.1    Mhiri, C.2    Vogelaar, A.3    Kerkveld, M.4    Pearce, S.R.5    Grandbastien, M.-A.6
  • 88
    • 33745523474 scopus 로고    scopus 로고
    • Generation of SNP markers for short straw in oat (Avena sativa L.)
    • DOI 10.1139/g05-100
    • Tanhuanpää P, Kalendar R, Laurila J, Schulman AH, Manninen O, Kiviharju E (2006). Generation of SNP markers for short straw in oat (Avena sativa L). Genome 49:282-287. (Pubitemid 43979163)
    • (2006) Genome , vol.49 , Issue.3 , pp. 282-287
    • Tanhuanpaa, P.1    Kalendar, R.2    Laurila, J.3    Schulman, A.H.4    Manninen, O.5    Kiviharju, E.6
  • 89
    • 34548162899 scopus 로고    scopus 로고
    • A major gene for grain cadmium accumulation in oat (Avena sativa L.)
    • DOI 10.1139/G07-036
    • Tanhuanpää P, Kalendar R, Schulman AH, Kiviharju E (2007). A major gene for grain cadmium accumulation in oat (Avena sativa L). Genome 50:588-594. (Pubitemid 47309791)
    • (2007) Genome , vol.50 , Issue.6 , pp. 588-594
    • Tanhuanpaa, P.1    Kalendar, R.2    Schulman, A.H.3    Kiviharju, E.4
  • 91
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • International Brachypodium Initiative
    • The International Brachypodium Initiative (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463:763-768.
    • (2010) Nature , vol.463 , pp. 763-768
  • 93
    • 30544438210 scopus 로고    scopus 로고
    • Retrotransposon characterisation and fingerprinting of apple clones by S-SAP markers
    • DOI 10.1007/s00122-005-0143-8
    • Venturi S, Dondini L, Donini P, Sansavini S (2006). Retrotransposon characterisation and fingerprinting of apple clones by S-SAP markers. Theor Appl Genet 112:440-444. (Pubitemid 43081587)
    • (2006) Theoretical and Applied Genetics , vol.112 , Issue.3 , pp. 440-444
    • Venturi, S.1    Dondini, L.2    Donini, P.3    Sansavini, S.4
  • 94
    • 0347986765 scopus 로고    scopus 로고
    • Transposable Elements Reveal the Impact of Introgression, Rather than Transposition, in Pisum Diversity, Evolution, and Domestication
    • DOI 10.1093/molbev/msg220
    • Vershinin AV, Allnutt TR, Knox MR, Ambrose MJ, Ellis THN (2003). Transposable elements reveal the impact of introgression, rather than transposition, in Pisum diversity, evolution and domestication. Mol Biol Evol 20:2067-2075. (Pubitemid 38057770)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.12 , pp. 2067-2075
    • Vershinin, A.V.1    Allnutt, T.R.2    Knox, M.R.3    Ambrose, M.J.4    Ellis, T.H.N.5
  • 95
    • 0033376112 scopus 로고    scopus 로고
    • Heterogeneity of the internal structure of PDR1, a family of Ty1/copia-like retrotransposons in pea
    • DOI 10.1007/s004380051132
    • Vershinin AV, Ellis THN (1999). Heterogeneity of the internal structure of PDR1, a family of Ty1/copia-like retrotransposons in pea. Mol Gen Genet 262:703-713. (Pubitemid 30018812)
    • (1999) Molecular and General Genetics , vol.262 , Issue.4-5 , pp. 703-713
    • Vershinin, A.V.1    Ellis, T.H.N.2
  • 96
    • 0025157864 scopus 로고
    • Genomic organization, evolution, and structural peculiarities of highly repetitive DNA of Hordeum vulgare
    • Vershinin AV, Salina EA, Solovyov VV, Timofeyeva LL (1990). Genomic organization, evolution and structural peculiarities of high repetitive DNA of Hordeum vulgare. Genome 33:441-449. (Pubitemid 20304663)
    • (1990) Genome , vol.33 , Issue.3 , pp. 441-449
    • Vershinin, A.V.1    Salina, E.A.2    Solovyov, V.V.3    Timofeyeva, L.L.4
  • 97
    • 0035214001 scopus 로고    scopus 로고
    • Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants
    • DOI 10.1101/gr.193301
    • Vicient CM, Kalendar R, Schulman AH (2001). Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants. Genome Res 11:2041-2049. (Pubitemid 33138801)
    • (2001) Genome Research , vol.11 , Issue.12 , pp. 2041-2049
    • Vicient, C.M.1    Kalendar, R.2    Schulman, A.H.3
  • 99
    • 13244264889 scopus 로고    scopus 로고
    • Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.)
    • DOI 10.1007/s00438-004-1069-6
    • Vitte C, Ishii T, Lamy F, Brar D, Panaud O (2004). Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L). Mol Genet Genomics 272:504-511. (Pubitemid 40193071)
    • (2004) Molecular Genetics and Genomics , vol.272 , Issue.5 , pp. 504-511
    • Vitte, C.1    Ishii, T.2    Lamy, F.3    Brar, D.4    Panaud, O.5
  • 102
    • 70349655727 scopus 로고    scopus 로고
    • Genetic variability in sunflower and in the Helianthus genus as assessed by retrotransposon-based molecular markers
    • Vukich M, Schulman AH, Giordani T, Natali L, Kalendar R, Cavallini A (2009). Genetic variability in sunflower and in the Helianthus genus as assessed by retrotransposon-based molecular markers. Theor Appl Genet 19:1027-1038.
    • (2009) Theor Appl. Genet. , vol.19 , pp. 1027-1038
    • Vukich, M.1    Schulman, A.H.2    Giordani, T.3    Natali, L.4    Kalendar, R.5    Cavallini, A.6
  • 104
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BBT et al. (1997). Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694.
    • (1997) Mol. Gen. Genet. , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.T.6
  • 105
    • 0025633560 scopus 로고
    • Fingerprinting genomes using PCR with arbitrary primers
    • Welsh J, McClelland M (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213-7218. (Pubitemid 120006020)
    • (1990) Nucleic Acids Research , vol.18 , Issue.24 , pp. 7213-7218
    • Welsh, J.1    McClelland, M.2
  • 108
    • 0033652834 scopus 로고    scopus 로고
    • An anchored AFLP-and retrotransposon-based map of diploid Avena
    • Yu G-X, Wise RP (2000). An anchored AFLP-and retrotransposon-based map of diploid Avena. Genome 43:736-749.
    • (2000) Genome , vol.43 , pp. 736-749
    • Yu, G.-X.1    Wise, R.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.