ISbrowser: An extension of ISfinder for visualizing insertion sequences in prokaryotic genomes

Nucleic Acids Research

Volumn 38, Issue SUPPL.1, 2009, Pages

  Kichenaradja, Pryavahiny ^a   Siguier, Patricia ^a   Pérochon, Jocelyne ^a   Chandler, Michael ^a  

^a UPS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENOME; BACTERIUM; CLASSIFICATION; DATA BASE; GENE INSERTION SEQUENCE; GENOME; INFORMATION SYSTEM; ISBROWSER; NOMENCLATURE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; PUBLICATION; TRANSPOSON; ALGORITHM; BIOLOGY; BIOTECHNOLOGY; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETIC DATABASE; INFORMATION RETRIEVAL; INTERNET; LEGAL ASPECT; METHODOLOGY; NUCLEIC ACID DATABASE; PROKARYOTIC CELL; PROTEIN DATABASE;

BACTERIA (MICROORGANISMS); PROKARYOTA;

ALGORITHMS; BIOTECHNOLOGY; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; GENE EXPRESSION PROFILING; GENOME, BACTERIAL; INFORMATION STORAGE AND RETRIEVAL; INTERNET; PHYLOGENY; PROKARYOTIC CELLS; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 75549084423     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp947     Document Type: Article

References (4)

1. Siguier, P., Perochon, J., Lestrade, L., Mahillon, J. and Chandler, M. (2006) ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res., 34, D32-D36.
2. Waterhouse, A.M., Procter, J.B., Martin, D.M., Clamp, M. and Barton, G.J. (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
3. Stothard, P. and Wishart, D.S. (2005) Circular genome visualization and exploration using CGView. Bioinformatics, 21, 537-539.
4. Leplae, R., Hebrant, A., Wodak, S.J. and Toussaint, A. (2004) ACLAME: A CLAssification of Mobile genetic Elements. Nucleic Acids Res., 32, D45-D49.