메뉴 건너뛰기




Volumn 83, Issue 4, 2008, Pages 321-329

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica

Author keywords

Evolution; Genome; Miniature inverted repeat transposable elements; Rice

Indexed keywords

CIS ACTING ELEMENT; MESSENGER RNA; POLYADENYLIC ACID;

EID: 54249135347     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.83.321     Document Type: Article
Times cited : (81)

References (41)
  • 1
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • Bennetzen, J. L. (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol. 42, 251-269.
    • (2000) Plant Mol. Biol , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 2
    • 33749522239 scopus 로고    scopus 로고
    • Genetics: Junk DNA as an evolutionary force
    • Biémont, C., and Vieira, C. (2006) Genetics: junk DNA as an evolutionary force. Nature 443, 521-524.
    • (2006) Nature , vol.443 , pp. 521-524
    • Biémont, C.1    Vieira, C.2
  • 3
    • 10044292910 scopus 로고    scopus 로고
    • Coding sequences of functioning human genes derived entirely from mobile element sequences
    • Britten, R. J. (2004) Coding sequences of functioning human genes derived entirely from mobile element sequences. Proc. Natl. Acad. Sci. USA 101, 16825-16830.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 16825-16830
    • Britten, R.J.1
  • 4
    • 22444439135 scopus 로고    scopus 로고
    • An Arabidopsis hAT-like transposase is essential for plant development
    • Bundock, P., and Hooykaas, P. (2005) An Arabidopsis hAT-like transposase is essential for plant development. Nature 436, 282-284.
    • (2005) Nature , vol.436 , pp. 282-284
    • Bundock, P.1    Hooykaas, P.2
  • 5
    • 0028450046 scopus 로고    scopus 로고
    • Bureau, T. E., and Wessler, S. R. (1994) Stowaway: A new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6, 907-916.
    • Bureau, T. E., and Wessler, S. R. (1994) Stowaway: A new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6, 907-916.
  • 6
    • 0037108159 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter: A key component in the regulation of gene expression
    • Butler, J. E. F., and Kadonaga, J. T. (2002) The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev. 16, 2583-2592.
    • (2002) Genes Dev , vol.16 , pp. 2583-2592
    • Butler, J.E.F.1    Kadonaga, J.T.2
  • 7
    • 33748747485 scopus 로고    scopus 로고
    • A systematic analysis of disease-associated variants in the 3′ regulatory regions of human protein-coding genes II: The importance of mRNA secondary structure in assessing the functionality of 3′ UTR variants
    • Chen, J. M., Férec, C., and Cooper, D. N. (2006) A systematic analysis of disease-associated variants in the 3′ regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3′ UTR variants. Hum. Genet. 120, 301-333.
    • (2006) Hum. Genet , vol.120 , pp. 301-333
    • Chen, J.M.1    Férec, C.2    Cooper, D.N.3
  • 8
    • 12344290346 scopus 로고    scopus 로고
    • Mechanisms of translational control by the 3′ UTR in development and differentiation
    • de Moor, C. H., Meijer, H., and Lissenden, S. (2005) Mechanisms of translational control by the 3′ UTR in development and differentiation. Semin. Cell Dev. Biol. 16, 49-58.
    • (2005) Semin. Cell Dev. Biol , vol.16 , pp. 49-58
    • de Moor, C.H.1    Meijer, H.2    Lissenden, S.3
  • 9
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy, S. R. (1998) Profile hidden Markov models. Bioinformatics 14, 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 10
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte, C., Jiang, N., and Wessler, S. R. (2002) Plant transposable elements: where genetics meets genomics. Nat. Rev. Genet. 3, 329-341.
    • (2002) Nat. Rev. Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 12
    • 10644276046 scopus 로고    scopus 로고
    • 3′-Untranslated regions are important in mRNA localization and translation: Lessons from selenium and metallothionein
    • Hesketh, J. (2004) 3′-Untranslated regions are important in mRNA localization and translation: lessons from selenium and metallothionein. Biochem. Soc. Trans. 32, 990-993.
    • (2004) Biochem. Soc. Trans , vol.32 , pp. 990-993
    • Hesketh, J.1
  • 13
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database: 1999
    • Higo, K., Ugawa, Y., Iwamoto, M., and Korenaga, T. (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucl. Acids Res. 27, 297-300.
    • (1999) Nucl. Acids Res , vol.27 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3    Korenaga, T.4
  • 14
    • 0035115215 scopus 로고    scopus 로고
    • Contribution of the Tos17 retrotransposon to rice functional genomics
    • Hirochika, H. (2001) Contribution of the Tos17 retrotransposon to rice functional genomics. Curr. Opin. Plant Biol. 4, 118-122.
    • (2001) Curr. Opin. Plant Biol , vol.4 , pp. 118-122
    • Hirochika, H.1
  • 15
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436, 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 16
    • 4944239027 scopus 로고    scopus 로고
    • Pack-MULE transposable elements mediate gene evolution in plants
    • Jiang, N., Bao, Z., Zhang, X., Eddy, S. R., and Wessler, S. R. (2004) Pack-MULE transposable elements mediate gene evolution in plants. Nature 431, 569-573.
    • (2004) Nature , vol.431 , pp. 569-573
    • Jiang, N.1    Bao, Z.2    Zhang, X.3    Eddy, S.R.4    Wessler, S.R.5
  • 17
    • 0037301560 scopus 로고    scopus 로고
    • Origin of a substantial fraction of human regulatory sequences from transposable elements
    • Jordan, I. K., Rogozin, I. B., Glazko, G. V., and Koonin, E. V. (2003) Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet. 19, 68-72.
    • (2003) Trends Genet , vol.19 , pp. 68-72
    • Jordan, I.K.1    Rogozin, I.B.2    Glazko, G.V.3    Koonin, E.V.4
  • 18
    • 85142147724 scopus 로고    scopus 로고
    • Juretic, N., Bureau, T. E., and Bruskiewich, R. M. (2004) Transposable element annotation of the rice genome. Bioinformatics 20, 155-160.
    • Juretic, N., Bureau, T. E., and Bruskiewich, R. M. (2004) Transposable element annotation of the rice genome. Bioinformatics 20, 155-160.
  • 19
    • 24344459435 scopus 로고    scopus 로고
    • Juretic, N., Hoen, D. R., Huynh, M. L., Harrison, P. M., and Bureau, T. E. (2005) The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. Genome Res. 15, 1292-1297.
    • Juretic, N., Hoen, D. R., Huynh, M. L., Harrison, P. M., and Bureau, T. E. (2005) The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. Genome Res. 15, 1292-1297.
  • 20
    • 0037226595 scopus 로고    scopus 로고
    • Transcriptional activation of retrotransposon alters the expression of adjacent genes in wheat
    • Kashkush, K., Feldman, M., and Levy, A. A. (2003) Transcriptional activation of retrotransposon alters the expression of adjacent genes in wheat. Nat. Genet. 33, 102-106.
    • (2003) Nat. Genet , vol.33 , pp. 102-106
    • Kashkush, K.1    Feldman, M.2    Levy, A.A.3
  • 21
    • 0038701605 scopus 로고    scopus 로고
    • The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
    • Lev-Maor, G., Sorek, R., Shomron, N., and Ast, G. (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300, 1288-1291.
    • (2003) Science , vol.300 , pp. 1288-1291
    • Lev-Maor, G.1    Sorek, R.2    Shomron, N.3    Ast, G.4
  • 23
    • 0036909437 scopus 로고    scopus 로고
    • Multi-protein complexes in eukaryotic gene transcription
    • Martinez, E. (2002) Multi-protein complexes in eukaryotic gene transcription. Plant Mol. Biol. 50, 925-947.
    • (2002) Plant Mol. Biol , vol.50 , pp. 925-947
    • Martinez, E.1
  • 24
    • 33645227861 scopus 로고    scopus 로고
    • Regulation of macrophage ceruloplasmin gene expression: One paradigm of 3′-UTR-mediated translational control
    • Mazumder, B., Sampath, P., and Fox, P. L. (2005) Regulation of macrophage ceruloplasmin gene expression: one paradigm of 3′-UTR-mediated translational control. Mol. Cells 20, 167-172.
    • (2005) Mol. Cells , vol.20 , pp. 167-172
    • Mazumder, B.1    Sampath, P.2    Fox, P.L.3
  • 26
    • 33748210835 scopus 로고    scopus 로고
    • Control of protein expression through mRNA stability in calcium signaling
    • Misquitta, C. M., Chen, T., and Grover, A. K. (2006) Control of protein expression through mRNA stability in calcium signaling. Cell Calcium 40, 329-346.
    • (2006) Cell Calcium , vol.40 , pp. 329-346
    • Misquitta, C.M.1    Chen, T.2    Grover, A.K.3
  • 27
    • 25144488228 scopus 로고    scopus 로고
    • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
    • Morgante, M., Brunner, S., Pea, G., Fengler, K., Zuccolo, A., and Rafalski, A. (2005) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat. Genet. 37, 997-1002.
    • (2005) Nat. Genet , vol.37 , pp. 997-1002
    • Morgante, M.1    Brunner, S.2    Pea, G.3    Fengler, K.4    Zuccolo, A.5    Rafalski, A.6
  • 30
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko, A., and Li, W. H. (2001) Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 17, 619-621.
    • (2001) Trends Genet , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.2
  • 32
    • 0025831356 scopus 로고
    • SIGNAL SCAN: A computer program that scans DNA sequences for eukaryotic transcriptional elements
    • Prestridge, D. S. (1991) SIGNAL SCAN: A computer program that scans DNA sequences for eukaryotic transcriptional elements. Cabios 7, 203-206.
    • (1991) Cabios , vol.7 , pp. 203-206
    • Prestridge, D.S.1
  • 33
    • 33947585498 scopus 로고    scopus 로고
    • Birth and death of genes promoted by transposable elements in Oryza sativa
    • Sakai, H., Tanaka, T., and Itoh, T. (2007) Birth and death of genes promoted by transposable elements in Oryza sativa. Gene 392, 59-63.
    • (2007) Gene , vol.392 , pp. 59-63
    • Sakai, H.1    Tanaka, T.2    Itoh, T.3
  • 34
    • 0036064148 scopus 로고    scopus 로고
    • Alu-containing exons are alternatively spliced
    • Sorek, R., Ast, G., and Graur, D. (2002) Alu-containing exons are alternatively spliced. Genome Res. 12, 1060-1067.
    • (2002) Genome Res , vol.12 , pp. 1060-1067
    • Sorek, R.1    Ast, G.2    Graur, D.3
  • 36
    • 33846857991 scopus 로고    scopus 로고
    • Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    • The Rice Annotation Project
    • The Rice Annotation Project (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res. 17, 175-183.
    • (2007) Genome Res , vol.17 , pp. 175-183
  • 37
    • 0037624063 scopus 로고    scopus 로고
    • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica Rice
    • The Rice Full-Length cDNA Consortium
    • The Rice Full-Length cDNA Consortium (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica Rice. Science 301, 376-379.
    • (2003) Science , vol.301 , pp. 376-379
  • 38
    • 0026885574 scopus 로고
    • Alternative splicing induced by insertion of retrotransposons into the Maize waxy gene
    • Varagona, M. J., Purugganan, M., and Wessler, S. R. (1992) Alternative splicing induced by insertion of retrotransposons into the Maize waxy gene. Plant Cell 4, 811-820.
    • (1992) Plant Cell , vol.4 , pp. 811-820
    • Varagona, M.J.1    Purugganan, M.2    Wessler, S.R.3
  • 40
    • 31344455118 scopus 로고    scopus 로고
    • A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter
    • Yang, G., Lee, Y. H., Jiang, Y., Shi, X., Kertbundit, S., and Hall, T. C. (2005) A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter. Plant Cell 17, 1559-1568.
    • (2005) Plant Cell , vol.17 , pp. 1559-1568
    • Yang, G.1    Lee, Y.H.2    Jiang, Y.3    Shi, X.4    Kertbundit, S.5    Hall, T.C.6
  • 41
    • 0033951447 scopus 로고    scopus 로고
    • Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize
    • Zhang, Q., Arbuckle, J., and Wessler, S. R. (2000) Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize. Proc. Natl. Acad. Sci. USA 97, 1160-1165.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1160-1165
    • Zhang, Q.1    Arbuckle, J.2    Wessler, S.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.