-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C. et al. The sequence of the human genome. Science 291, 1304-1351 (2001).
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
-
3
-
-
0032723359
-
Integrating DNA: Transposases and retroviral integrases
-
Haren, L., Ton-Hoang, B., & Chandler, M. Integrating DNA: transposases and retroviral integrases. Annu. Rev. Microbiol 53, 245-281 (1999).
-
(1999)
Annu. Rev. Microbiol
, vol.53
, pp. 245-281
-
-
Haren, L.1
Ton-Hoang, B.2
Chandler, M.3
-
4
-
-
0003873979
-
-
ASM, Washington DC
-
Craig, N., Craigie, R., Geliert, M. & Lambowitz, A. Mobile DNA II (ASM, Washington DC, 2002).
-
(2002)
Mobile DNA II
-
-
Craig, N.1
Craigie, R.2
Geliert, M.3
Lambowitz, A.4
-
5
-
-
0035343895
-
Comparative architecture of transposase and integrase complexes
-
Rice, P. A. & Baker, T. A. Comparative architecture of transposase and integrase complexes. Nature Struct. Biol. 8, 302-307 (2001).
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 302-307
-
-
Rice, P.A.1
Baker, T.A.2
-
6
-
-
0034913514
-
Structure and evolution of the hAT transposon superfamily
-
Rubin, E., Lithwick, G. & Levy, A. A. Structure and evolution of the hAT transposon superfamily. Genetics 158, 949-957 (2001).
-
(2001)
Genetics
, vol.158
, pp. 949-957
-
-
Rubin, E.1
Lithwick, G.2
Levy, A.A.3
-
7
-
-
0003873979
-
-
(eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A.) (ASM, Washington DC)
-
Kunze, R. W. & Weil, C. F. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A.) 565-610 (ASM, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 565-610
-
-
Kunze, R.W.1
Weil, C.F.2
-
8
-
-
0003873979
-
-
(eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A.) (ASM, Washington DC)
-
Robertson, H. M. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A.) 1093-1110 (ASM, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 1093-1110
-
-
Robertson, H.M.1
-
9
-
-
0025935671
-
Evidence for a common evolutionary origin of inverted repeat transposon in Drosophila and plants: Hobo, Activator, and Tam3
-
Calvi, B. R., Hong, T. J., Findley, S. D. & Gelbart, W. M. Evidence for a common evolutionary origin of inverted repeat transposon in Drosophila and plants: hobo, Activator, and Tam3. Cell 66, 465-471 (1991).
-
(1991)
Cell
, vol.66
, pp. 465-471
-
-
Calvi, B.R.1
Hong, T.J.2
Findley, S.D.3
Gelbart, W.M.4
-
10
-
-
0028063082
-
The Hermes transposable element from the house fly, Musca domestica, is a short inverted repeat-type element of the hobo, Ac, and Tam3 (hAT) element family
-
Warren, W, D., Atkinson, P. W. & O'Brochta, D. A. The Hermes transposable element from the house fly, Musca domestica, is a short inverted repeat-type element of the hobo, Ac, and Tam3 (hAT) element family. Genet. Res. 64, 87-97 (1994).
-
(1994)
Genet. Res.
, vol.64
, pp. 87-97
-
-
Warren, W.D.1
Atkinson, P.W.2
O'Brochta, D.A.3
-
11
-
-
0029895562
-
Hermes, a functional non-Drosophilid insect gene vector from Musca domestica
-
O'Brochta, D. A., Warren, W. D., Saville, K. I. & Atkinson, P. W. Hermes, a functional non-Drosophilid insect gene vector from Musca domestica. Genetics 142, 907-914 (1996).
-
(1996)
Genetics
, vol.142
, pp. 907-914
-
-
O'Brochta, D.A.1
Warren, W.D.2
Saville, K.I.3
Atkinson, P.W.4
-
12
-
-
0035997348
-
V(D)J recombination: RAG proteins, repair factors, and regulation
-
Gellert, M. V(D)J recombination: RAG proteins, repair factors, and regulation. Annu. Rev. Biochem. 71, 101-132 (2002).
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 101-132
-
-
Gellert, M.1
-
13
-
-
0026792892
-
V(D)J recombination: Broken DNA molecules with covalently sealed (hairpin) coding ends in SCID mouse thymoctes
-
Roth, D. B., Menetski, J. P., Nakajima, P. B., Bosma, M. J. & Gellert, M, V(D)J recombination: broken DNA molecules with covalently sealed (hairpin) coding ends in SCID mouse thymoctes. Cell 70, 983-991 (1992).
-
(1992)
Cell
, vol.70
, pp. 983-991
-
-
Roth, D.B.1
Menetski, J.P.2
Nakajima, P.B.3
Bosma, M.J.4
Gellert, M.5
-
14
-
-
0031848525
-
Tfol: An Ac-like transposon from the plant pathogenic fungus Fusarium oxysporum
-
Okuda, M., Ikeda, K., Namiki, E., Nishi, K. & Tsuge, T. Tfol: an Ac-like transposon from the plant pathogenic fungus Fusarium oxysporum. Mol Gen. Genet. 258, 599-607 (1998).
-
(1998)
Mol Gen. Genet.
, vol.258
, pp. 599-607
-
-
Okuda, M.1
Ikeda, K.2
Namiki, E.3
Nishi, K.4
Tsuge, T.5
-
15
-
-
0030871750
-
The Hermes element from Musca domestica can transpose in four families of cyclorrhaphan flies
-
Sarkar, A. et al. The Hermes element from Musca domestica can transpose in four families of cyclorrhaphan flies. Genetics 99, 15-29 (1997).
-
(1997)
Genetics
, vol.99
, pp. 15-29
-
-
Sarkar, A.1
-
16
-
-
0032475879
-
Tn10 transposition via a DNA hairpin intermediate
-
Kennedy, A., Guhathakurta, A., Kleckner, N. & Haniford, D. B. Tn10 transposition via a DNA hairpin intermediate. Cell 95, 125-134 (1998).
-
(1998)
Cell
, vol.95
, pp. 125-134
-
-
Kennedy, A.1
Guhathakurta, A.2
Kleckner, N.3
Haniford, D.B.4
-
17
-
-
0033601183
-
Hairpin formation in Tn5 transposition
-
Bhasin, A., Goryshin, I. Y. & Reznikoff, W. S. Hairpin formation in Tn5 transposition. J. Biol. Chem. 274, 37021-37029 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 37021-37029
-
-
Bhasin, A.1
Goryshin, I.Y.2
Reznikoff, W.S.3
-
18
-
-
0032555758
-
DNA transposition by the RAG1 and RAG2 proteins: A possible source of oncogenic translocations
-
Hiom, K., Melek, M. & Gellert, M. DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocations. Cell 94, 463-470 (1998).
-
(1998)
Cell
, vol.94
, pp. 463-470
-
-
Hiom, K.1
Melek, M.2
Gellert, M.3
-
19
-
-
0032551829
-
Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system
-
Agrawal, A., Eastman, O. M. & Schatz, D. G. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature 394, 744-751 (1998).
-
(1998)
Nature
, vol.394
, pp. 744-751
-
-
Agrawal, A.1
Eastman, O.M.2
Schatz, D.G.3
-
20
-
-
0029967722
-
Similarities between initiation of V(D)J recombination and retroviral integration
-
van Gent, D. C., Mizuuchi, K. & Gellert, M. Similarities between initiation of V(D)J recombination and retroviral integration. Science 271, 1592-1594 (1996).
-
(1996)
Science
, vol.271
, pp. 1592-1594
-
-
Van Gent, D.C.1
Mizuuchi, K.2
Gellert, M.3
-
21
-
-
0034724557
-
Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: Insights from phosphorothioate stereoselectivity
-
Kennedy, A. K., Haniford, D. B. & Mizuuchi, K. Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity. Cell 101, 295-305 (2000).
-
(2000)
Cell
, vol.101
, pp. 295-305
-
-
Kennedy, A.K.1
Haniford, D.B.2
Mizuuchi, K.3
-
22
-
-
0025899314
-
Inversion of the phosphate chirality at the target site of the Mu DNA strand transfer: Evidence for a one-step transesterification mechanism
-
Mizuuchi, K. & Adzuma, K. Inversion of the phosphate chirality at the target site of the Mu DNA strand transfer: evidence for a one-step transesterification mechanism. Cell 66, 129-140 (1991).
-
(1991)
Cell
, vol.66
, pp. 129-140
-
-
Mizuuchi, K.1
Adzuma, K.2
-
23
-
-
0141958834
-
The C-terminus of the Hermes transposase contains a protein multimerization domain
-
Michel, K., O'Brochta. D. A. & Atkinson, P. W. The C-terminus of the Hermes transposase contains a protein multimerization domain. Insect Biochem. Mol. Biol. 33, 959-970 (2003).
-
(2003)
Insect Biochem. Mol. Biol.
, vol.33
, pp. 959-970
-
-
Michel, K.1
O'Brochta, D.A.2
Atkinson, P.W.3
-
24
-
-
0032125708
-
The same two monomers within a MuA tetramer provide the DDE domains for the strand cleavage and strand transfer steps of transposition
-
Namgoong, S. & Harshey, R. The same two monomers within a MuA tetramer provide the DDE domains for the strand cleavage and strand transfer steps of transposition. EMBO J. 17, 3775-3785 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 3775-3785
-
-
Namgoong, S.1
Harshey, R.2
-
25
-
-
0033569428
-
Orginization and dynamics of the Mu transpososome: Recombination by communication between two active sites
-
Williams, T. L., Jackson, E. L., Carritte, A. & Baker, T. A. Orginization and dynamics of the Mu transpososome: recombination by communication between two active sites. Genes Dev. 13, 2725-2737 (1999).
-
(1999)
Genes Dev.
, vol.13
, pp. 2725-2737
-
-
Williams, T.L.1
Jackson, E.L.2
Carritte, A.3
Baker, T.A.4
-
26
-
-
0023056233
-
Transposable elements generate novel spatial patterns of gene expression in Antirrhinum majus
-
Coen, E. S., Carpenter, R. & Martin, C. Transposable elements generate novel spatial patterns of gene expression in Antirrhinum majus. Cell 47, 285-296 (1986).
-
(1986)
Cell
, vol.47
, pp. 285-296
-
-
Coen, E.S.1
Carpenter, R.2
Martin, C.3
-
27
-
-
0033780451
-
Transposition of maize Ac/Ds transposable elements in the yeast Saccharomyces cerevisiae
-
Weil, C. F. & Kunze, R. Transposition of maize Ac/Ds transposable elements in the yeast Saccharomyces cerevisiae. Nature Genet. 26, 187-190 (2000).
-
(2000)
Nature Genet.
, vol.26
, pp. 187-190
-
-
Weil, C.F.1
Kunze, R.2
-
28
-
-
0037155703
-
Hairpin opening and overhang processing by an Artemis/DNA-dependent protein, kinase complex in nonhomologous end joining and V(D)J recombination
-
Ma, Y., Pannicke, U., Schwarz, K. & Lieber, M. R. Hairpin opening and overhang processing by an Artemis/DNA-dependent protein, kinase complex in nonhomologous end joining and V(D)J recombination. Cell 108, 781-794 (2002).
-
(2002)
Cell
, vol.108
, pp. 781-794
-
-
Ma, Y.1
Pannicke, U.2
Schwarz, K.3
Lieber, M.R.4
-
29
-
-
1642458360
-
Microhomology-dependent end joining and repair of transposon-induced DNA hairpins by host factors in Saccharomyces cerevisiae
-
Yu, J., Marshall, K., Yamaguchi, M., Haber, J. E. & Weil, C. F. Microhomology-dependent end joining and repair of transposon-induced DNA hairpins by host factors in Saccharomyces cerevisiae. Mol. Cell. Biol 24, 1351-1364 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 1351-1364
-
-
Yu, J.1
Marshall, K.2
Yamaguchi, M.3
Haber, J.E.4
Weil, C.F.5
-
30
-
-
0035108439
-
Separation-of-function mutants reveal critical roles for RAG2 in both the cleavage and joining steps of V(D)J recombination
-
Qiu, I. X., Kale, S. B., Yarnell, S. H. & Roth, D. B. Separation-of-function mutants reveal critical roles for RAG2 in both the cleavage and joining steps of V(D)J recombination. Mol. Cell 7, 77-87 (2001).
-
(2001)
Mol. Cell
, vol.7
, pp. 77-87
-
-
Qiu, I.X.1
Kale, S.B.2
Yarnell, S.H.3
Roth, D.B.4
-
31
-
-
1942421722
-
RAG proteins shepherd double-strand breaks to a specific pathway, suppressing error-prone repair, but RAG nicking initiates homologous recombination
-
Lee, G., Neiditch, M., Salus, S. & Roth, D. RAG proteins shepherd double-strand breaks to a specific pathway, suppressing error-prone repair, but RAG nicking initiates homologous recombination. Cell 117, 171-184 (2004).
-
(2004)
Cell
, vol.117
, pp. 171-184
-
-
Lee, G.1
Neiditch, M.2
Salus, S.3
Roth, D.4
-
32
-
-
0027968068
-
CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choke
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choke. Nucleic Acids Res. 22, 4673-4680 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
0029858349
-
The Tn7 transposase is a heteromeric complex in which DNA breakage and joining activities are distributed between different gene products
-
Sarnovsky, R., May, E. W. & Craig, N. L. The Tn7 transposase is a heteromeric complex in which DNA breakage and joining activities are distributed between different gene products. EMBO J. 15, 6348-6361 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 6348-6361
-
-
Sarnovsky, R.1
May, E.W.2
Craig, N.L.3
-
34
-
-
0027398505
-
Metal ion catalysis in the Tetrahymena ribozyme reaction
-
Piccirilli, J. A., Vyie, J. S., Caruthers, M. H. & Cech, T. R. Metal ion catalysis in the Tetrahymena ribozyme reaction. Nature 361, 85-88 (1993).
-
(1993)
Nature
, vol.361
, pp. 85-88
-
-
Piccirilli, J.A.1
Vyie, J.S.2
Caruthers, M.H.3
Cech, T.R.4
-
35
-
-
0033603053
-
All three residues of the Tn10 transposase DDE catalytic triad function in divalent metal ion binding
-
Allingham, J., Pribil, P. & Haniford, D. All three residues of the Tn10 transposase DDE catalytic triad function in divalent metal ion binding. J. Mol. Biol. 289, 1195-1206 (1999).
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1195-1206
-
-
Allingham, J.1
Pribil, P.2
Haniford, D.3
-
36
-
-
0032005866
-
Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes
-
Brautigam, C. & Steitz, T. Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes. Curr. Opin. Struct. Biol. 8, 54-63 (1998).
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 54-63
-
-
Brautigam, C.1
Steitz, T.2
-
37
-
-
0028584269
-
Crystal structure of the catalytic domain of HEV-1 integrase: Similarity to other polynucleotidyl transferases
-
Dyda, E et al. Crystal structure of the catalytic domain of HEV-1 integrase: similarity to other polynucleotidyl transferases. Science 266, 1981-1986 (1994).
-
(1994)
Science
, vol.266
, pp. 1981-1986
-
-
Dyda, E.1
-
38
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin, L. I., Bryson, K. & Jones, D. T. The PSIPRED protein structure prediction server. Bioinformatics 16, 404-405 (2000).
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.I.1
Bryson, K.2
Jones, D.T.3
-
39
-
-
0000675571
-
Mutations of acidic residues in RAG1 define the active site of the V(D)J recombinase
-
Kim, D. R., Dai, Y., Mundy, C. L., Yang, W. & Octtinger, M. A. Mutations of acidic residues in RAG1 define the active site of the V(D)J recombinase. Genes Dev, 13, 3070-3080 (1999).
-
(1999)
Genes Dev
, vol.13
, pp. 3070-3080
-
-
Kim, D.R.1
Dai, Y.2
Mundy, C.L.3
Yang, W.4
Octtinger, M.A.5
-
40
-
-
0033954892
-
Identification of two catalytic residues in RAG1 that define 2 single active site within the RAG1/RAG2 protein complex
-
Fugmann, S. D., Villey, I. J., Ptaszek, L. M. & Schatz, D. G. Identification of two catalytic residues in RAG1 that define 2 single active site within the RAG1/RAG2 protein complex. Mol Cell 5, 97-107 (2000).
-
(2000)
Mol Cell
, vol.5
, pp. 97-107
-
-
Fugmann, S.D.1
Villey, I.J.2
Ptaszek, L.M.3
Schatz, D.G.4
-
41
-
-
0033380368
-
Mutational analysis of RAG1 and RAG2 identifies three catalytic amino acids in RAG1 critical for both cleavage steps of V(D)J recombination
-
Landrec, M. A., Wibbenmeyer, J. A. & Roth, D. B. Mutational analysis of RAG1 and RAG2 identifies three catalytic amino acids in RAG1 critical for both cleavage steps of V(D)J recombination. Genes Dev. 13, 3059-3069 (1999).
-
(1999)
Genes Dev.
, vol.13
, pp. 3059-3069
-
-
Landrec, M.A.1
Wibbenmeyer, J.A.2
Roth, D.B.3
-
42
-
-
0003873979
-
-
(eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A.) (ASM, Washington DC)
-
Walbot, V in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A.) 533-563 (ASM, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 533-563
-
-
Walbot, V.1
-
43
-
-
0344442909
-
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences
-
Sarkar, A. et al. Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences. Mol Genet. Genom. 270, 173-180 (2003).
-
(2003)
Mol Genet. Genom.
, vol.270
, pp. 173-180
-
-
Sarkar, A.1
-
45
-
-
0033597135
-
The three-dimensional structure of a Tn5 transposase-related protein determined to 2.9 Å resolution
-
Davies, D. R., Braam, L. M., Reznikoff, W. S. & Rayment, I. The three-dimensional structure of a Tn5 transposase-related protein determined to 2.9 Å resolution. J. Biol Chem. 274, 11904-11913 (1999).
-
(1999)
J. Biol Chem.
, vol.274
, pp. 11904-11913
-
-
Davies, D.R.1
Braam, L.M.2
Reznikoff, W.S.3
Rayment, I.4
-
46
-
-
0037192801
-
Mutational analysis of the base flipping event found in Tn5 transposition
-
Ason, B. & Reznikoff, W. S. Mutational analysis of the base flipping event found in Tn5 transposition. J. Biol Chem. 277, 11284-11291 (2002).
-
(2002)
J. Biol Chem.
, vol.277
, pp. 11284-11291
-
-
Ason, B.1
Reznikoff, W.S.2
-
47
-
-
0036240040
-
Mutational analysis of all conserved basic amino acids in RAG-1 reveals catalytic, step arrest, and joining-deficient mutants in the V(D)J recombinase
-
Huye, L. E., Purugganan, M. M., Jiang, M. M. & Roth, D. B. Mutational analysis of all conserved basic amino acids in RAG-1 reveals catalytic, step arrest, and joining-deficient mutants in the V(D)J recombinase. Mol Cell. Biol. 22, 3460-3473 (2002).
-
(2002)
Mol Cell. Biol.
, vol.22
, pp. 3460-3473
-
-
Huye, L.E.1
Purugganan, M.M.2
Jiang, M.M.3
Roth, D.B.4
-
48
-
-
4644325594
-
Mixing active-site components: A recipe for the unique enzymatic activity of a telomere resolvase
-
Bankhead, T. & Chaconas, G. Mixing active-site components: a recipe for the unique enzymatic activity of a telomere resolvase. Proc. Natl Acad. Sci. USA 101, 13768-13773 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 13768-13773
-
-
Bankhead, T.1
Chaconas, G.2
-
49
-
-
3242877122
-
Putting the pieces together: Identification and characterization of structural domains in the V(D)J recombination protein RAG1
-
De, P. & Rodgers, K. Putting the pieces together: identification and characterization of structural domains in the V(D)J recombination protein RAG1. Immunol Rev. 200, 70-82 (2004).
-
(2004)
Immunol Rev.
, vol.200
, pp. 70-82
-
-
De, P.1
Rodgers, K.2
-
50
-
-
0344936724
-
The origins of V(D)J recombination
-
Lewis, S. M. & Wu, G. E. The origins of V(D)J recombination. Cell 88, 159-162 (1997).
-
(1997)
Cell
, vol.88
, pp. 159-162
-
-
Lewis, S.M.1
Wu, G.E.2
|