메뉴 건너뛰기




Volumn 109, Issue 14, 2012, Pages 5277-5282

Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair

Author keywords

Computational modeling and design; Signal transduction; Synthetic biology

Indexed keywords

GUANOSINE TRIPHOSPHATASE; GUANOSINE TRIPHOSPHATASE EXCHANGE FACTOR; INTERSECTIN; PROTEIN CDC42; UNCLASSIFIED DRUG;

EID: 84859467082     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1114487109     Document Type: Article
Times cited : (73)

References (38)
  • 1
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • DOI 10.1038/35002125
    • Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403:335-338. (Pubitemid 30062393)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 335-338
    • Elowitz, M.B.1    Leibier, S.2
  • 2
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • DOI 10.1038/35002131
    • Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403:339-342. (Pubitemid 30062394)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 3
    • 28544440364 scopus 로고    scopus 로고
    • Reconstruction of genetic circuits
    • DOI 10.1038/nature04335, PII N04335
    • Sprinzak D, Elowitz MB (2005) Reconstruction of genetic circuits. Nature 438:443-448. (Pubitemid 41742009)
    • (2005) Nature , vol.438 , Issue.7067 , pp. 443-448
    • Sprinzak, D.1    Elowitz, M.B.2
  • 4
    • 34249894454 scopus 로고    scopus 로고
    • Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors
    • DOI 10.1038/nature05851, PII NATURE05851
    • Yeh BJ, Rutigliano RJ, Deb A, Bar-Sagi D, Lim WA (2007) Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors. Nature 447:596-600. (Pubitemid 46868045)
    • (2007) Nature , vol.447 , Issue.7144 , pp. 596-600
    • Yeh, B.J.1    Rutigliano, R.J.2    Deb, A.3    Bar-Sagi, D.4    Lim, W.A.5
  • 5
    • 40849100220 scopus 로고    scopus 로고
    • Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics
    • DOI 10.1126/science.1151153
    • Bashor CJ, Helman NC, Yan S, Lim WA (2008) Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics. Science 319:1539-1543. (Pubitemid 351398185)
    • (2008) Science , vol.319 , Issue.5869 , pp. 1539-1543
    • Bashor, C.J.1    Helman, N.C.2    Yan, S.3    Lim, W.A.4
  • 6
    • 0141757323 scopus 로고    scopus 로고
    • Reprogramming control of an allosteric signaling switch through modular recombination
    • DOI 10.1126/science.1085945
    • Dueber JE, Yeh BJ, Chak K, Lim WA (2003) Reprogramming control of an allosteric signaling switch through modular recombination. Science 301:1904-1908. (Pubitemid 37221395)
    • (2003) Science , vol.301 , Issue.5641 , pp. 1904-1908
    • Dueber, J.E.1    Yeh, B.J.2    Chak, K.3    Lim, W.A.4
  • 7
    • 69949104482 scopus 로고    scopus 로고
    • A genetically encoded photoactivatable Rac controls the motility of living cells
    • Wu YI, et al. (2009) A genetically encoded photoactivatable Rac controls the motility of living cells. Nature 461:104-108.
    • (2009) Nature , vol.461 , pp. 104-108
    • Wu, Y.I.1
  • 8
    • 70350070364 scopus 로고    scopus 로고
    • Spatiotemporal control of cell signalling using a light-switchable protein interaction
    • Levskaya A, Weiner OD, Lim WA, Voigt CA (2009) Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature 461:997-1001.
    • (2009) Nature , vol.461 , pp. 997-1001
    • Levskaya, A.1    Weiner, O.D.2    Lim, W.A.3    Voigt, C.A.4
  • 9
    • 51349089700 scopus 로고    scopus 로고
    • Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway
    • Leung DW, Otomo C, Chory J, Rosen MK (2008) Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway. Proc Natl Acad Sci USA 105:12797-12802.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 12797-12802
    • Leung, D.W.1    Otomo, C.2    Chory, J.3    Rosen, M.K.4
  • 10
    • 77951159012 scopus 로고    scopus 로고
    • Rapid diversification of cell signaling phenotypes by modular domain recombination
    • Peisajovich SG, Garbarino JE, Wei P, Lim WA (2010) Rapid diversification of cell signaling phenotypes by modular domain recombination. Science 328:368-372.
    • (2010) Science , vol.328 , pp. 368-372
    • Peisajovich, S.G.1    Garbarino, J.E.2    Wei, P.3    Lim, W.A.4
  • 11
    • 70350334391 scopus 로고    scopus 로고
    • Computer-aided design of functional protein interactions
    • Mandell DJ, Kortemme T (2009) Computer-aided design of functional protein interactions. Nat Chem Biol 5:797-807.
    • (2009) Nat Chem Biol , vol.5 , pp. 797-807
    • Mandell, D.J.1    Kortemme, T.2
  • 12
    • 0035782661 scopus 로고    scopus 로고
    • Review: Protein design-where we were, where we are, where we're going
    • Pokala N, Handel TM (2001) Review: protein design-where we were, where we are, where we're going. J Struct Biol 134:269-281.
    • (2001) J Struct Biol , vol.134 , pp. 269-281
    • Pokala, N.1    Handel, T.M.2
  • 13
    • 79956017135 scopus 로고    scopus 로고
    • Computational design of proteins targeting the conserved stem region of influenza hemagglutinin
    • Fleishman SJ, et al. (2011) Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science 332:816-821.
    • (2011) Science , vol.332 , pp. 816-821
    • Fleishman, S.J.1
  • 14
    • 65249171530 scopus 로고    scopus 로고
    • Design of protein-interaction specificity gives selective bZIP-binding peptides
    • Grigoryan G, Reinke AW, Keating AE (2009) Design of protein-interaction specificity gives selective bZIP-binding peptides. Nature 458:859-864.
    • (2009) Nature , vol.458 , pp. 859-864
    • Grigoryan, G.1    Reinke, A.W.2    Keating, A.E.3
  • 15
    • 0037069690 scopus 로고    scopus 로고
    • Rho GTPases in cell biology
    • DOI 10.1038/nature01148
    • Etienne-Manneville S, Hall A (2002) Rho GTPases in cell biology. Nature 420:629-635. (Pubitemid 36764489)
    • (2002) Nature , vol.420 , Issue.6916 , pp. 629-635
    • Etienne-Manneville, S.1    Hall, A.2
  • 16
    • 79960512963 scopus 로고    scopus 로고
    • Chronicles of the GTPase switch
    • Cherfils J, Zeghouf M(2011) Chronicles of the GTPase switch. Nat Chem Biol 7:493-495.
    • (2011) Nat Chem Biol , vol.7 , pp. 493-495
    • Cherfils, J.1    Zeghouf, M.2
  • 17
    • 0036644975 scopus 로고    scopus 로고
    • Guanine nucleotide exchange factors for Rho GTPases: Turning on the switch
    • DOI 10.1101/gad.1003302
    • Schmidt A, Hall A (2002) Guanine nucleotide exchange factors for Rho GTPases: turning on the switch. Genes Dev 16:1587-1609. (Pubitemid 34743321)
    • (2002) Genes and Development , vol.16 , Issue.13 , pp. 1587-1609
    • Schmidt, A.1    Hall, A.2
  • 21
    • 33745927413 scopus 로고    scopus 로고
    • Computational Design of a New Hydrogen Bond Network and at Least a 300-fold Specificity Switch at a Protein-Protein Interface
    • DOI 10.1016/j.jmb.2006.05.022, PII S0022283606006048
    • Joachimiak LA, Kortemme T, Stoddard BL, Baker D (2006) Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a proteinprotein interface. J Mol Biol 361:195-208. (Pubitemid 44041449)
    • (2006) Journal of Molecular Biology , vol.361 , Issue.1 , pp. 195-208
    • Joachimiak, L.A.1    Kortemme, T.2    Stoddard, B.L.3    Baker, D.4
  • 22
    • 77949327063 scopus 로고    scopus 로고
    • Computational design of second-site suppressor mutations at protein-protein interfaces
    • Sammond DW, Eletr ZM, Purbeck C, Kuhlman B (2010) Computational design of second-site suppressor mutations at protein-protein interfaces. Proteins 78:1055-1065.
    • (2010) Proteins , vol.78 , pp. 1055-1065
    • Sammond, D.W.1    Eletr, Z.M.2    Purbeck, C.3    Kuhlman, B.4
  • 23
    • 79960609097 scopus 로고    scopus 로고
    • Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design
    • Smith CA, Kortemme T (2011) Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design. PLoS One 6:e20451.
    • (2011) PLoS One , vol.6
    • Smith, C.A.1    Kortemme, T.2
  • 24
    • 77956730468 scopus 로고    scopus 로고
    • Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains
    • Smith CA, Kortemme T (2010) Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains. J Mol Biol 402:460-474.
    • (2010) J Mol Biol , vol.402 , pp. 460-474
    • Smith, C.A.1    Kortemme, T.2
  • 25
    • 70349832423 scopus 로고    scopus 로고
    • Following evolutionary paths to protein-protein interactions with high affinity and selectivity
    • Levin KB, et al. (2009) Following evolutionary paths to protein-protein interactions with high affinity and selectivity. Nat Struct Mol Biol 16:1049-1055.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1049-1055
    • Levin, K.B.1
  • 27
    • 33847420373 scopus 로고    scopus 로고
    • Mechanism of Actin Network Attachment to Moving Membranes: Barbed End Capture by N-WASP WH2 Domains
    • DOI 10.1016/j.cell.2006.12.049, PII S0092867407001316
    • Co C, Wong DT, Gierke S, Chang V, Taunton J (2007) Mechanism of actin network attachment to moving membranes: barbed end capture by N-WASP WH2 domains. Cell 128:901-913. (Pubitemid 46341410)
    • (2007) Cell , vol.128 , Issue.5 , pp. 901-913
    • Co, C.1    Wong, D.T.2    Gierke, S.3    Chang, V.4    Taunton, J.5
  • 28
    • 21444442055 scopus 로고    scopus 로고
    • An inducible translocation strategy to rapidly activate and inhibit small GTPase signaling pathways
    • DOI 10.1038/nmeth763
    • Inoue T, Heo WD, Grimley JS, Wandless TJ, Meyer T (2005) An inducible translocation strategy to rapidly activate and inhibit small GTPase signaling pathways. Nat Methods 2:415-418. (Pubitemid 40916559)
    • (2005) Nature Methods , vol.2 , Issue.6 , pp. 415-418
    • Inoue, T.1    Heo, W.D.2    Grimley, J.S.3    Wandless, T.J.4    Meyer, T.5
  • 30
    • 44449097488 scopus 로고    scopus 로고
    • On the Rho'd: The regulation of membrane protrusions by Rho-GTPases
    • Ladwein M, Rottner K (2008) On the Rho'd: the regulation of membrane protrusions by Rho-GTPases. FEBS Lett 582:2066-2074.
    • (2008) FEBS Lett , vol.582 , pp. 2066-2074
    • Ladwein, M.1    Rottner, K.2
  • 31
    • 0035861555 scopus 로고    scopus 로고
    • Trp(56) of rac1 specifies interaction with a subset of guanine nucleotide exchange factors
    • Gao Y, Xing J, Streuli M, Leto TL, Zheng Y (2001) Trp(56) of rac1 specifies interaction with a subset of guanine nucleotide exchange factors. J Biol Chem 276:47530-47541.
    • (2001) J Biol Chem , vol.276 , pp. 47530-47541
    • Gao, Y.1    Xing, J.2    Streuli, M.3    Leto, T.L.4    Zheng, Y.5
  • 34
    • 0027502565 scopus 로고
    • Oncogene ect2 is related to regulators of small GTP-binding proteins
    • DOI 10.1038/362462a0
    • Miki T, Smith CL, Long JE, Eva A, Fleming TP (1993) Oncogene ect2 is related to regulators of small GTP-binding proteins. Nature 362:462-465. (Pubitemid 23107372)
    • (1993) Nature , vol.362 , Issue.6419 , pp. 462-465
    • Miki, T.1    Smith, C.L.2    Long, J.E.3    Eva, A.4    Fleming, T.P.5
  • 35
    • 0029973601 scopus 로고    scopus 로고
    • Lfc and Lsc oncoproteins represent two new guanine nucleotide exchange factors for the Rho GTP-binding protein
    • DOI 10.1074/jbc.271.44.27374
    • Glaven JA, Whitehead IP, Nomanbhoy T, Kay R, Cerione RA (1996) Lfc and Lsc oncoproteins represent two new guanine nucleotide exchange factors for the Rho GTP-binding protein. J Biol Chem 271:27374-27381. (Pubitemid 26367293)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.44 , pp. 27374-27381
    • Glaven, J.A.1    Whitehead, I.P.2    Nomanbhoy, T.3    Kay, R.4    Cerione, R.A.5
  • 36
    • 45649084560 scopus 로고    scopus 로고
    • Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction
    • Smith CA, Kortemme T (2008) Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction. J Mol Biol 380:742-756.
    • (2008) J Mol Biol , vol.380 , pp. 742-756
    • Smith, C.A.1    Kortemme, T.2
  • 37
    • 68349104348 scopus 로고    scopus 로고
    • Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
    • Mandell DJ, Coutsias EA, Kortemme T (2009) Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling. Nat Methods 6:551-552.
    • (2009) Nat Methods , vol.6 , pp. 551-552
    • Mandell, D.J.1    Coutsias, E.A.2    Kortemme, T.3
  • 38
    • 82755186510 scopus 로고    scopus 로고
    • Algorithm discovery by protein folding game players
    • Khatib F, et al. (2011) Algorithm discovery by protein folding game players. Proc Natl Acad Sci USA 108:18949-18953.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 18949-18953
    • Khatib, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.