-
1
-
-
0032479179
-
Anatomy of hot spots in protein interfaces
-
Bogan A.A., and Thorn K.S. Anatomy of hot spots in protein interfaces. J. Mol. Biol. 280 (1998) 1-9
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
2
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Conte L.L., Chothia C., and Janin J. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285 (1999) 2177-2198
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Conte, L.L.1
Chothia, C.2
Janin, J.3
-
3
-
-
0032189032
-
Calculation of HyHel10-lysozyme binding free energy changes: effect of ten point mutations
-
Sharp K.A. Calculation of HyHel10-lysozyme binding free energy changes: effect of ten point mutations. Proteins: Struct. Funct. Genet. 33 (1998) 39-48
-
(1998)
Proteins: Struct. Funct. Genet.
, vol.33
, pp. 39-48
-
-
Sharp, K.A.1
-
4
-
-
0033568644
-
Computional alanine scanning to probe protein-protein interactions: a novel approach to evaluate binding free energies
-
Massova I., and Kollman P.A. Computional alanine scanning to probe protein-protein interactions: a novel approach to evaluate binding free energies. J. Am. Chem. Soc. 121 (1999) 8133-8143
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 8133-8143
-
-
Massova, I.1
Kollman, P.A.2
-
5
-
-
0037079570
-
Computational alanine scanning of the 1:1 human growth hormone-receptor complex
-
Huo S., Massova I., and Kollman P.A. Computational alanine scanning of the 1:1 human growth hormone-receptor complex. J. Comput. Chem. 23 (2002) 15-27
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 15-27
-
-
Huo, S.1
Massova, I.2
Kollman, P.A.3
-
6
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations
-
Guerois R., Nielsen J.E., and Serrano L. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol. 320 (2002) 369-387
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
7
-
-
0037195144
-
A simple physical model for binding energy hot spots in protein-protein complexes
-
Kortemme T., and Baker D. A simple physical model for binding energy hot spots in protein-protein complexes. Proc. Natl Acad. Sci. USA 99 (2002) 14116-14121
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 14116-14121
-
-
Kortemme, T.1
Baker, D.2
-
8
-
-
0034724569
-
SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family
-
Brannetti B., Via A., Cestra G., Cesareni G., and Helmer-Citterich M. SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family. J. Mol. Biol. 298 (2000) 313-328
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 313-328
-
-
Brannetti, B.1
Via, A.2
Cestra, G.3
Cesareni, G.4
Helmer-Citterich, M.5
-
9
-
-
0035834678
-
Distinct binding specificity of the multiple PDZ domains of INADL, a human protein with homology to INAD from Drosophila melanogaster
-
Vaccaro P., Brannetti B., Montecchi-Palazzi L., Philipp S., Helmer Citterich M., Cesareni G., and Dente L. Distinct binding specificity of the multiple PDZ domains of INADL, a human protein with homology to INAD from Drosophila melanogaster. J. Biol. Chem. 276 (2001) 42122-42130
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 42122-42130
-
-
Vaccaro, P.1
Brannetti, B.2
Montecchi-Palazzi, L.3
Philipp, S.4
Helmer Citterich, M.5
Cesareni, G.6
Dente, L.7
-
10
-
-
0032566286
-
Dual recognition and the role of specificity-determining residues in colicin E9 DNase-immunity protein interactions
-
Li W., Hamill S.J., Hemmings A.M., Moore G.R., James R., and Kleanthous C. Dual recognition and the role of specificity-determining residues in colicin E9 DNase-immunity protein interactions. Biochemistry 37 (1998) 11771-11779
-
(1998)
Biochemistry
, vol.37
, pp. 11771-11779
-
-
Li, W.1
Hamill, S.J.2
Hemmings, A.M.3
Moore, G.R.4
James, R.5
Kleanthous, C.6
-
11
-
-
0037197902
-
Interrogating protein interaction networks through structural biology
-
Aloy P., and Russell R.B. Interrogating protein interaction networks through structural biology. Proc. Natl Acad. Sci. USA 99 (2002) 5896-5901
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 5896-5901
-
-
Aloy, P.1
Russell, R.B.2
-
12
-
-
0035914473
-
Virtual interaction profiles of proteins
-
Wollacott A.M., and Desjarlais J.R. Virtual interaction profiles of proteins. J. Mol. Biol. 313 (2001) 317-342
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 317-342
-
-
Wollacott, A.M.1
Desjarlais, J.R.2
-
13
-
-
0038752617
-
Computational design of receptor and sensor proteins with novel functions
-
Looger L.L., Dwyer M.A., Smith J.J., and Hellinga H.W. Computational design of receptor and sensor proteins with novel functions. Nature 423 (2003) 185-190
-
(2003)
Nature
, vol.423
, pp. 185-190
-
-
Looger, L.L.1
Dwyer, M.A.2
Smith, J.J.3
Hellinga, H.W.4
-
14
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
Harbury P.B., Zhang T., Kim P.S., and Alber T. A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science 262 (1993) 1401-1407
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
15
-
-
0037217406
-
Automated design of specificity in molecular recognition
-
Havranek J.J., and Harbury P.B. Automated design of specificity in molecular recognition. Nature Struct. Biol. 10 (2003) 45-52
-
(2003)
Nature Struct. Biol.
, vol.10
, pp. 45-52
-
-
Havranek, J.J.1
Harbury, P.B.2
-
16
-
-
0036315558
-
Computer-aided design of a PDZ domain to recognize new target sequences
-
Reina J., Lacroix E., Hobson S.D., Fernandez-Ballester G., Rybin V., Schwab M.S., et al. Computer-aided design of a PDZ domain to recognize new target sequences. Nature Struct. Biol. 9 (2002) 621-627
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 621-627
-
-
Reina, J.1
Lacroix, E.2
Hobson, S.D.3
Fernandez-Ballester, G.4
Rybin, V.5
Schwab, M.S.6
-
17
-
-
0036407643
-
Modulating calmodulin binding specificity through computational protein design
-
Shifman J.M., and Mayo S.L. Modulating calmodulin binding specificity through computational protein design. J. Mol. Biol. 323 (2002) 417-423
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 417-423
-
-
Shifman, J.M.1
Mayo, S.L.2
-
18
-
-
0344392711
-
Exploring the origins of binding specificity through the computational redesign of calmodulin
-
Shifman J.M., and Mayo S.L. Exploring the origins of binding specificity through the computational redesign of calmodulin. Proc. Natl Acad. Sci. USA 100 (2003) 13274-13279
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13274-13279
-
-
Shifman, J.M.1
Mayo, S.L.2
-
20
-
-
0002347541
-
The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein
-
Ko T.P., Liao C.C., Ku W.Y., Chak K.F., and Yuan H.S. The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein. Struct. Fold. Des. 7 (1999) 91-102
-
(1999)
Struct. Fold. Des.
, vol.7
, pp. 91-102
-
-
Ko, T.P.1
Liao, C.C.2
Ku, W.Y.3
Chak, K.F.4
Yuan, H.S.5
-
21
-
-
1842577654
-
Computational redesign of protein-protein interaction specificity
-
Kortemme T., Joachimiak L.A., Bullock A.N., Schuler A.D., Stoddard B.L., and Baker D. Computational redesign of protein-protein interaction specificity. Nature Struct. Mol. Biol. 11 (2004) 371-379
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 371-379
-
-
Kortemme, T.1
Joachimiak, L.A.2
Bullock, A.N.3
Schuler, A.D.4
Stoddard, B.L.5
Baker, D.6
-
22
-
-
0028886403
-
Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and noncognate interactions that span the millimolar to femtomolar affinity range
-
Wallis R., Leung K.Y., Pommer A.J., Videler H., Moore G.R., James R., and Kleanthous C. Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and noncognate interactions that span the millimolar to femtomolar affinity range. Biochemistry 34 (1995) 13751-13759
-
(1995)
Biochemistry
, vol.34
, pp. 13751-13759
-
-
Wallis, R.1
Leung, K.Y.2
Pommer, A.J.3
Videler, H.4
Moore, G.R.5
James, R.6
Kleanthous, C.7
-
23
-
-
0034283147
-
Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes
-
Kuhlmann U.C., Pommer A.J., Moore G.R., James R., and Kleanthous C. Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes. J. Mol. Biol. 301 (2000) 1163-1178
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 1163-1178
-
-
Kuhlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
24
-
-
0028315988
-
Determinants of repressor-operator recognition from the structure of the Trp operator binding-site
-
Shakked Z., Guzikevichguerstein G., Frolow F., Rabinovich D., Joachimiak A., and Sigler P.B. Determinants of repressor-operator recognition from the structure of the Trp operator binding-site. Nature 368 (1994) 469-473
-
(1994)
Nature
, vol.368
, pp. 469-473
-
-
Shakked, Z.1
Guzikevichguerstein, G.2
Frolow, F.3
Rabinovich, D.4
Joachimiak, A.5
Sigler, P.B.6
-
25
-
-
0028157348
-
Mutagenesis supports water mediated recognition in the Trp repressor-operator system
-
Joachimiak A., Haran T.E., and Sigler P.B. Mutagenesis supports water mediated recognition in the Trp repressor-operator system. EMBO J. 13 (1994) 367-372
-
(1994)
EMBO J.
, vol.13
, pp. 367-372
-
-
Joachimiak, A.1
Haran, T.E.2
Sigler, P.B.3
-
26
-
-
0028014642
-
Bound water-molecules and conformational stabilization help mediate an antigen-antibody association
-
Bhat T.N., Bentley G.A., Boulot G., Greene M.I., Tello D., Dallacqua W., et al. Bound water-molecules and conformational stabilization help mediate an antigen-antibody association. Proc. Natl Acad. Sci. USA 91 (1994) 1089-1093
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 1089-1093
-
-
Bhat, T.N.1
Bentley, G.A.2
Boulot, G.3
Greene, M.I.4
Tello, D.5
Dallacqua, W.6
-
27
-
-
0031556018
-
Analysis of protein-protein interactions and the effects of amino acid mutations on their energetics. The importance of water molecules in the binding epitope
-
Covell D.G., and Wallqvist A. Analysis of protein-protein interactions and the effects of amino acid mutations on their energetics. The importance of water molecules in the binding epitope. J. Mol. Biol. 269 (1997) 281-297
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 281-297
-
-
Covell, D.G.1
Wallqvist, A.2
-
28
-
-
0028074974
-
Protein-protein recognition - crystal structural-analysis of a barnase barstar complex at 2.0-angstrom resolution
-
Buckle A.M., Schreiber G., and Fersht A.R. Protein-protein recognition - crystal structural-analysis of a barnase barstar complex at 2.0-angstrom resolution. Biochemistry 33 (1994) 8878-8889
-
(1994)
Biochemistry
, vol.33
, pp. 8878-8889
-
-
Buckle, A.M.1
Schreiber, G.2
Fersht, A.R.3
-
29
-
-
0029364787
-
Conservation of water molecules in an antibody-antigen interaction
-
Braden B.C., Fields B.A., and Poljak R.J. Conservation of water molecules in an antibody-antigen interaction. J. Mol. Recogn. 8 (1995) 317-325
-
(1995)
J. Mol. Recogn.
, vol.8
, pp. 317-325
-
-
Braden, B.C.1
Fields, B.A.2
Poljak, R.J.3
-
30
-
-
13944256616
-
A "solvated rotainer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces
-
Jiang L., Kuhlman B., Kortemme T.A., and Baker D. A "solvated rotainer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces. Proteins: Struct. Funct. Bioinformat. 58 (2005) 893-904
-
(2005)
Proteins: Struct. Funct. Bioinformat.
, vol.58
, pp. 893-904
-
-
Jiang, L.1
Kuhlman, B.2
Kortemme, T.A.3
Baker, D.4
-
31
-
-
0034641749
-
Native protein sequences are close to optimal for their structures
-
Kuhlman B., and Baker D. Native protein sequences are close to optimal for their structures. Proc. Natl Acad. Sci. USA 97 (2000) 10383-10388
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 10383-10388
-
-
Kuhlman, B.1
Baker, D.2
-
33
-
-
0037470581
-
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
-
Kortemme T., Morozov A.V., and Baker D. An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. J. Mol. Biol. 326 (2003) 1239-1259
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1239-1259
-
-
Kortemme, T.1
Morozov, A.V.2
Baker, D.3
-
34
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill S., and von Hippel P.H. Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem. 182 (1989) 319-326
-
(1989)
Anal. Biochem.
, vol.182
, pp. 319-326
-
-
Gill, S.1
von Hippel, P.H.2
-
35
-
-
0031059866
-
Processing of X-ray data collected in oscillation mode
-
Otwinowski Z.A.M. Processing of X-ray data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.A.M.1
-
36
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D 54 (1998) 905-921
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
37
-
-
0032790081
-
XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density
-
McRee D.E. XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125 (1999) 156-165
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
|