-
1
-
-
0032252057
-
Frequent Expression of the c-kit Proto-Oncogene in Canine Malignant Mammary Tumor
-
Kubo K., Matsuyama S., Katayama K., Tsutsumi C., Yonezawa K., Shimada T., Kotani T., Sakuma S., Ohashi F., Takamori Y., Frequent expression of the c-kit proto-oncogene in canine malignant mammary tumor Journal of Veterinary Medical Science 1998 60 12 1335 1340 (Pubitemid 128533642)
-
(1998)
Journal of Veterinary Medical Science
, vol.60
, Issue.12
, pp. 1335-1340
-
-
Kubo, K.1
Matsuyama, S.2
Katayama, K.3
Tsutsumi, C.4
Yonezawa, K.5
Shimada, T.6
Kotani, T.7
Sakuma, S.8
Ohashi, F.9
Takamori, Y.10
-
2
-
-
0027401607
-
The multistep nature of cancer
-
DOI 10.1016/0168-9525(93)90209-Z
-
Vogelstein B., Kinzler K. W., The multistep nature of cancer Trends in Genetics 1993 9 4 138 141 (Pubitemid 23098782)
-
(1993)
Trends in Genetics
, vol.9
, Issue.4
, pp. 138-141
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
3
-
-
0031442518
-
Characterization of the yeast transcriptome
-
DOI 10.1016/S0092-8674(00)81845-0
-
Velculescu V. E., Zhang L., Zhou W., Vogelstein J., Basrai M. A., Bassett D. E., Hieter P., Vogelstein B., Kinzler K. W., Characterization of the yeast transcriptome Cell 1997 88 2 243 251 (Pubitemid 28015873)
-
(1997)
Cell
, vol.88
, Issue.2
, pp. 243-251
-
-
Velculescu, V.E.1
Zhang, L.2
Zhou, W.3
Vogelstein, J.4
Basrai, M.A.5
Bassett Jr., D.E.6
Hieter, P.7
Vogelstein, B.8
Kinzler, K.W.9
-
4
-
-
13344269000
-
From proteins to proteomes: Large scale protein identification by two-dimensional electrophoresis and amino acid analysis
-
Wilkins M. R., Pasquali C., Appel R. D., From proteins to proteomes: large scale protein identification by two-dimensional electrophoresis and amino acid analysis Biotechnology 1996 14 1 61 65
-
(1996)
Biotechnology
, vol.14
, Issue.1
, pp. 61-65
-
-
Wilkins, M.R.1
Pasquali, C.2
Appel, R.D.3
-
5
-
-
0032168794
-
Systematic functional analysis of the yeast genome
-
DOI 10.1016/S0167-7799(98)01214-1, PII S0167779998012141
-
Oliver S. G., Winson M. K., Kell D. B., Baganz F., Systematic functional analysis of the yeast genome Trends in Biotechnology 1998 16 9 373 378 (Pubitemid 28410425)
-
(1998)
Trends in Biotechnology
, vol.16
, Issue.9
, pp. 373-378
-
-
Oliver, S.G.1
Winson, M.K.2
Kell, D.B.3
Baganz, F.4
-
6
-
-
0034442863
-
Progress in deciphering the information content of the 'glycome' - A crescendo in the closing years of the millennium
-
DOI 10.1023/A:1011022509500
-
Feizi T., Progress in deciphering the information content of the glycomea crescendo in the closing years of the millennium Glycoconjugate Journal 2000 17 7-9 553 565 (Pubitemid 32480344)
-
(2000)
Glycoconjugate Journal
, vol.17
, Issue.7-9
, pp. 553-565
-
-
Feizi, T.1
-
7
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
DOI 10.1016/0092-8674(93)90529-Y
-
Lee R. C., Feinbaum R. L., Ambros V., The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 1993 75 5 843 854 (Pubitemid 24014542)
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
8
-
-
0026612858
-
Oligonucleotide hybridisations on glass supports: A novel linker for oligonucleotide synthesis and hybridisation properties of oligonucleotides synthesised in situ
-
Maskos U., Southern E. M., Oligonucleotide hybridisations on glass supports: a novel linker for oligonucleotide synthesis and hybridisation properties of oligonucleotides synthesised in situ Nucleic Acids Research 1992 20 7 1679 1684
-
(1992)
Nucleic Acids Research
, vol.20
, Issue.7
, pp. 1679-1684
-
-
Maskos, U.1
Southern, E.M.2
-
9
-
-
0035891313
-
SPR imaging measurements of 1-D and 2-D DNA microarrays created from microfluidic channels on gold thin films
-
DOI 10.1021/ac010762s
-
Lee H. J., Goodrich T. T., Corn R. M., SPR imaging measurements of 1-D and 2-D DNA microarrays created from microfluidic channels on gold thin films Analytical Chemistry 2001 73 22 5525 5531 (Pubitemid 33108564)
-
(2001)
Analytical Chemistry
, vol.73
, Issue.22
, pp. 5525-5531
-
-
Lee, H.J.1
Goodrich, T.T.2
Corn, R.M.3
-
10
-
-
0033039498
-
Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays
-
DOI 10.1038/9674
-
Hacia J. G., Fan J. B., Ryder O., Jin L., Edgemon K., Ghandour G., Mayer R. A., Sun B., Hsie L., Robbins C. M., Brody L. C., Wang D., Lander E. S., Lipshutz R., Fodor S. P. A., Collins F. S., Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays Nature Genetics 1999 22 2 164 167 (Pubitemid 29264810)
-
(1999)
Nature Genetics
, vol.22
, Issue.2
, pp. 164-167
-
-
Hacia, J.G.1
Fan, J.-B.2
Ryder, O.3
Jin, L.4
Edgemon, K.5
Ghandour, G.6
Mayer, R.A.7
Sun, B.8
Hsie, L.9
Robbins, C.M.10
Brody, L.C.11
Wang, D.12
Lander, E.S.13
Lipshutz, R.14
Fodor, S.P.A.15
Collins, F.S.16
-
11
-
-
0029812283
-
A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
-
Shalon D., Smith S. J., Brown P. O., A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization Genome Research 1996 6 7 639 645 (Pubitemid 26275868)
-
(1996)
Genome Research
, vol.6
, Issue.7
, pp. 639-645
-
-
Shalon, D.1
Smith, S.J.2
Brown, P.O.3
-
13
-
-
0242317346
-
Fundamentals of cDNA microarray data analysis
-
DOI 10.1016/j.tig.2003.09.015
-
Leung Y. F., Cavalieri D., Fundamentals of cDNA microarray data analysis Trends in Genetics 2003 19 11 649 659 (Pubitemid 37338385)
-
(2003)
Trends in Genetics
, vol.19
, Issue.11
, pp. 649-659
-
-
Leung, Y.F.1
Cavalieri, D.2
-
14
-
-
34247875975
-
Evaluation of gene-expression clustering via mutual information distance measure
-
Priness I., Maimon O., Ben-Gal I., Evaluation of gene-expression clustering via mutual information distance measure BMC Bioinformatics 2007 8, article 111
-
(2007)
BMC Bioinformatics
, vol.8111
-
-
Priness, I.1
Maimon, O.2
Ben-Gal, I.3
-
15
-
-
78049434350
-
Dimension reduction for high-dimensional data
-
Li L., Dimension reduction for high-dimensional data Methods in Molecular Biology 2010 620 417 434
-
(2010)
Methods in Molecular Biology
, vol.620
, pp. 417-434
-
-
Li, L.1
-
16
-
-
44949224555
-
Clustering approaches to identifying gene expression patterns from DNA microarray data
-
Do J. H., Choi D. K., Clustering approaches to identifying gene expression patterns from DNA microarray data Molecules and Cells 2008 25 2 279 288 (Pubitemid 351819007)
-
(2008)
Molecules and Cells
, vol.25
, Issue.2
, pp. 279-288
-
-
Do, J.H.1
Choi, D.-K.2
-
17
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME) - Toward standards for microarray data
-
DOI 10.1038/ng1201-365
-
Brazma A., Hingamp P., Quackenbush J., Sherlock G., Spellman P., Stoeckert C., Aach J., Ansorge W., Ball C. A., Causton H. C., Gaasterland T., Glenisson P., Holstege F. C. P., Kim I. F., Markowitz V., Matese J. C., Parkinson H., Robinson A., Sarkans U., Schulze-Kremer S., Stewart J., Taylor R., Vilo J., Vingron M., Minimum information about a microarray experiment (MIAME)-toward standards for microarray data Nature Genetics 2001 29 4 365 371 (Pubitemid 34326681)
-
(2001)
Nature Genetics
, vol.29
, Issue.4
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.P.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
18
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
DOI 10.1038/nbt1239, PII NBT1239
-
Shi L., Reid L. H., Jones W. D., The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nature Biotechnology 2006 24 9 1151 1161 (Pubitemid 44359727)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.9
, pp. 1151-1161
-
-
Shi, L.1
-
19
-
-
0002922661
-
Microarray result: How accurate are they?
-
Kothapalli R., Yoder S. J., Mane S., Loughran T. P., Microarray result: how accurate are they? BMC Bioinformatics 2002 3, article 22
-
(2002)
BMC Bioinformatics
, vol.322
-
-
Kothapalli, R.1
Yoder, S.J.2
Mane, S.3
Loughran, T.P.4
-
20
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang Z., Gerstein M., Snyder M., RNA-Seq: a revolutionary tool for transcriptomics Nature Reviews Genetics 2009 10 1 57 63
-
(2009)
Nature Reviews Genetics
, vol.10
, Issue.1
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
21
-
-
77956838065
-
Advances in understanding cancer genomes through second-generation sequencing
-
Meyerson M., Gabriel S., Getz G., Advances in understanding cancer genomes through second-generation sequencing Nature Reviews Genetics 2010 11 10 685 696
-
(2010)
Nature Reviews Genetics
, vol.11
, Issue.10
, pp. 685-696
-
-
Meyerson, M.1
Gabriel, S.2
Getz, G.3
-
22
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
DOI 10.1038/nature06884, PII NATURE06884
-
Wheeler D. A., Srinivasan M., Egholm M., Shen Y., Chen L., McGuire A., He W., Chen Y. J., Makhijani V., Roth G. T., Gomes X., Tartaro K., Niazi F., Turcotte C. L., Irzyk G. P., Lupski J. R., Chinault C., Song X. Z., Liu Y., Yuan Y., Nazareth L., Qin X., Muzny D. M., Margulies M., Weinstock G. M., Gibbs R. A., Rothberg J. M., The complete genome of an individual by massively parallel DNA sequencing Nature 2008 452 7189 872 876 (Pubitemid 351550870)
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
McGuire, A.6
He, W.7
Chen, Y.-J.8
Makhijani, V.9
Roth, G.T.10
Gomes, X.11
Tartaro, K.12
Niazi, F.13
Turcotte, C.L.14
Irzyk, G.P.15
Lupski, J.R.16
Chinault, C.17
Song, X.-Z.18
Liu, Y.19
Yuan, Y.20
Nazareth, L.21
Qin, X.22
Muzny, D.M.23
Margulies, M.24
Weinstock, G.M.25
Gibbs, R.A.26
Rothberg, J.M.27
more..
-
23
-
-
55549101623
-
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
-
Ley T. J., Mardis E. R., Ding L., Fulton B., McLellan M. D., Chen K., Dooling D., Dunford-Shore B. H., McGrath S., Hickenbotham M., Cook L., Abbott R., Larson D. E., Koboldt D. C., Pohl C., Smith S., Hawkins A., Abbott S., Locke D., Hillier L. W., Miner T., Fulton L., Magrini V., Wylie T., Glasscock J., Conyers J., Sander N., Shi X., Osborne J. R., Minx P., Gordon D., Chinwalla A., Zhao Y., Ries R. E., Payton J. E., Westervelt P., Tomasson M. H., Watson M., Baty J., Ivanovich J., Heath S., Shannon W. D., Nagarajan R., Walter M. J., Link D. C., Graubert T. A., DiPersio J. F., Wilson R. K., DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome Nature 2008 456 7218 66 72
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 66-72
-
-
Ley, T.J.1
Mardis, E.R.2
Ding, L.3
Fulton, B.4
McLellan, M.D.5
Chen, K.6
Dooling, D.7
Dunford-Shore, B.H.8
McGrath, S.9
Hickenbotham, M.10
Cook, L.11
Abbott, R.12
Larson, D.E.13
Koboldt, D.C.14
Pohl, C.15
Smith, S.16
Hawkins, A.17
Abbott, S.18
Locke, D.19
Hillier, L.W.20
Miner, T.21
Fulton, L.22
Magrini, V.23
Wylie, T.24
Glasscock, J.25
Conyers, J.26
Sander, N.27
Shi, X.28
Osborne, J.R.29
Minx, P.30
Gordon, D.31
Chinwalla, A.32
Zhao, Y.33
Ries, R.E.34
Payton, J.E.35
Westervelt, P.36
Tomasson, M.H.37
Watson, M.38
Baty, J.39
Ivanovich, J.40
Heath, S.41
Shannon, W.D.42
Nagarajan, R.43
Walter, M.J.44
Link, D.C.45
Graubert, T.A.46
Dipersio, J.F.47
Wilson, R.K.48
more..
-
24
-
-
47949084846
-
Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing
-
Morin R. D., Bainbridge M., Fejes A., Hirst M., Krzywinski M., Pugh T. J., McDonald H., Varhol R., Jones S. J. M., Marra M. A., Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing BioTechniques 2008 45 1 81 94
-
(2008)
BioTechniques
, vol.45
, Issue.1
, pp. 81-94
-
-
Morin, R.D.1
Bainbridge, M.2
Fejes, A.3
Hirst, M.4
Krzywinski, M.5
Pugh, T.J.6
McDonald, H.7
Varhol, R.8
Jones, S.J.M.9
Marra, M.A.10
-
25
-
-
62049085786
-
Transcriptome sequencing to detect gene fusions in cancer
-
Maher C. A., Kumar-Sinha C., Cao X., Kalyana-Sundaram S., Han B., Jing X., Sam L., Barrette T., Palanisamy N., Chinnaiyan A. M., Transcriptome sequencing to detect gene fusions in cancer Nature 2009 458 7234 97 101
-
(2009)
Nature
, vol.458
, Issue.7234
, pp. 97-101
-
-
Maher, C.A.1
Kumar-Sinha, C.2
Cao, X.3
Kalyana-Sundaram, S.4
Han, B.5
Jing, X.6
Sam, L.7
Barrette, T.8
Palanisamy, N.9
Chinnaiyan, A.M.10
-
26
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
DOI 10.1038/nmeth.1223, PII NMETH.1223
-
Cloonan N., Forrest A. R. R., Kolle G., Gardiner B. B. A., Faulkner G. J., Brown M. K., Taylor D. F., Steptoe A. L., Wani S., Bethel G., Robertson A. J., Perkins A. C., Bruce S. J., Lee C. C., Ranade S. S., Peckham H. E., Manning J. M., McKernan K. J., Grimmond S. M., Stem cell transcriptome profiling via massive-scale mRNA sequencing Nature Methods 2008 5 7 613 619 (Pubitemid 351911866)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
27
-
-
33845984917
-
Gene discovery and annotation using LCM-454 transcriptome sequencing
-
DOI 10.1101/gr.5145806
-
Emrich S. J., Barbazuk W. B., Li L., Schnable P. S., Gene discovery and annotation using LCM-454 transcriptome sequencing Genome Research 2007 17 1 69 73 (Pubitemid 46041667)
-
(2007)
Genome Research
, vol.17
, Issue.1
, pp. 69-73
-
-
Emrich, S.J.1
Barbazuk, W.B.2
Li, L.3
Schnable, P.S.4
-
28
-
-
44949127038
-
Helicos BioSciences
-
DOI 10.2217/14622416.9.4.477
-
Milos P., Helicos BioSciences Pharmacogenomics 2008 9 4 477 480 (Pubitemid 351803930)
-
(2008)
Pharmacogenomics
, vol.9
, Issue.4
, pp. 477-480
-
-
Milos, P.1
-
29
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
DOI 10.1038/nature03959, PII N03959
-
Margulies M., Egholm M., Altman W. E., Attiya S., Bader J. S., Bemben L. A., Berka J., Braverman M. S., Chen Y. J., Chen Z., Dewell S. B., De Winter A., Drake J., Du L., Fierro J. M., Forte R., Gomes X. V., Goodwin B. C., He W., Helgesen S., Chun H. H., Hutchinson S., Irzyk G. P., Jando S. C., Alenquer M. L. I., Jarvie T. P., Jirage K. B., Kim J. B., Knight J. R., Lanza J. R., Leamon J. H., Lee W. L., Lefkowitz S. M., Lei M., Li J., Lohman K. L., Lu H., Makhijani V. B., McDade K. E., McKenna M. P., Myers E. W., Nickerson E., Nobile J. R., Plant R., Puc B. P., Reifler M., Ronan M. T., Roth G. T., Sarkis G. J., Simons J. F., Simpson J. W., Srinivasan M., Tartaro K. R., Tomasz A., Vogt K. A., Volkmer G. A., Wang S. H., Wang Y., Weiner M. P., Willoughby D. A., Yu P., Begley R. F., Rothberg J. M., Genome sequencing in microfabricated high-density picolitre reactors Nature 2006 437 7057 376 380 (Pubitemid 41613494)
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.-J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.I.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.-B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
31
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
Schuster S. C., Next-generation sequencing transforms today's biology Nature Methods 2008 5 1 16 18
-
(2008)
Nature Methods
, vol.5
, Issue.1
, pp. 16-18
-
-
Schuster, S.C.1
-
32
-
-
46449103738
-
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
-
DOI 10.1101/gr.076463.108
-
Valouev A., Ichikawa J., Tonthat T., Stuart J., Ranade S., Peckham H., Zeng K., Malek J. A., Costa G., McKernan K., Sidow A., Fire A., Johnson S. M., A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning Genome Research 2008 18 7 1051 1063 (Pubitemid 351931156)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1051-1063
-
-
Valouev, A.1
Ichikawa, J.2
Tonthat, T.3
Stuart, J.4
Ranade, S.5
Peckham, H.6
Zeng, K.7
Malek, J.A.8
Costa, G.9
McKernan, K.10
Sidow, A.11
Fire, A.12
Johnson, S.M.13
-
33
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
DOI 10.1111/j.1365-294X.2008.03666.x
-
Vera J. C., Wheat C. W., Fescemyer H. W., Frilander M. J., Crawford D. L., Hanski I., Marden J. H., Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing Molecular Ecology 2008 17 7 1636 1647 (Pubitemid 351441703)
-
(2008)
Molecular Ecology
, vol.17
, Issue.7
, pp. 1636-1647
-
-
Vera, J.C.1
Wheat, C.W.2
Fescemyer, H.W.3
Frilander, M.J.4
Crawford, D.L.5
Hanski, I.6
Marden, J.H.7
-
34
-
-
46249130709
-
The beginning of the end for microarrays?
-
DOI 10.1038/nmeth0708-585, PII NMETH0708-585
-
Shendure J., The beginning of the end for microarrays? Nature Methods 2008 5 7 585 587 (Pubitemid 351911858)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 585-587
-
-
Shendure, J.1
-
35
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi A., Williams B. A., McCue K., Schaeffer L., Wold B., Mapping and quantifying mammalian transcriptomes by RNA-Seq Nature Methods 2008 5 7 621 628 (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
36
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
DOI 10.1038/nature07002, PII NATURE07002
-
Wilhelm B. T., Marguerat S., Watt S., Schubert F., Wood V., Goodhead I., Penkett C. J., Rogers J., Bhler J., Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution Nature 2008 453 7199 1239 1243 (Pubitemid 351913597)
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bahler, J.9
-
37
-
-
70349671437
-
Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis
-
Chen Y., Gelfond J. A. L., McManus L. M., Shireman P. K., Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis BMC Genomics 2009 10, article 1471 407
-
(2009)
BMC Genomics
, vol.101-471
, pp. 407
-
-
Chen, Y.1
Gelfond, J.A.L.2
McManus, L.M.3
Shireman, P.K.4
-
38
-
-
38549150275
-
MiRBase: Tools for microRNA genomics
-
Griffiths-Jones S., Saini H. K., Van Dongen S., Enright A. J., miRBase: tools for microRNA genomics Nucleic Acids Research 2008 36 1 D154 D158
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.1
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Van Dongen, S.3
Enright, A.J.4
-
39
-
-
33644750115
-
MiRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S., Grocock R. J., van Dongen S., Bateman A., Enright A. J., miRBase: microRNA sequences, targets and gene nomenclature Nucleic Acids Research 2006 34 D140 D144
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
41
-
-
70349626993
-
Increasing the specificity and function of DNA microarrays by processing arrays at different stringencies
-
Dufva M., Petersen J., Poulsen L., Increasing the specificity and function of DNA microarrays by processing arrays at different stringencies Analytical and Bioanalytical Chemistry 2009 395 3 669 677
-
(2009)
Analytical and Bioanalytical Chemistry
, vol.395
, Issue.3
, pp. 669-677
-
-
Dufva, M.1
Petersen, J.2
Poulsen, L.3
-
42
-
-
44349101865
-
MiR-Q: A novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample
-
Sharbati-Tehrani S., Kutz-Lohroff B., Bergbauer R., Scholven J., Einspanier R., MiR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample BMC Molecular Biology 2008 9, article 34
-
(2008)
BMC Molecular Biology
, vol.934
-
-
Sharbati-Tehrani, S.1
Kutz-Lohroff, B.2
Bergbauer, R.3
Scholven, J.4
Einspanier, R.5
-
43
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C., Ridzon D. A., Broomer A. J., Zhou Z., Lee D. H., Nguyen J. T., Barbisin M., Xu N. L., Mahuvakar V. R., Andersen M. R., Lao K. Q., Livak K. J., Guegler K. J., Real-time quantification of microRNAs by stem-loop RT-PCR Nucleic Acids Research 2005 33 20 e179
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.20
, pp. 179
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
Nguyen, J.T.6
Barbisin, M.7
Xu, N.L.8
Mahuvakar, V.R.9
Andersen, M.R.10
Lao, K.Q.11
Livak, K.J.12
Guegler, K.J.13
-
44
-
-
67649511718
-
Derlin-1 and Stanniocalcin-1 are Differentially Regulated in Metastasizing Canine Mammary Adenocarcinomas
-
Klopfleisch R., Gruber A. D., Derlin-1 and Stanniocalcin-1 are Differentially Regulated in Metastasizing Canine Mammary Adenocarcinomas Journal of Comparative Pathology 2009 141 2-3 113 120
-
(2009)
Journal of Comparative Pathology
, vol.141
, Issue.23
, pp. 113-120
-
-
Klopfleisch, R.1
Gruber, A.D.2
-
45
-
-
67349130509
-
Differential expression of cell cycle regulators p21, p27 and p53 in metastasizing canine mammary adenocarcinomas versus normal mammary glands
-
Klopfleisch R., Gruber A. D., Differential expression of cell cycle regulators p21, p27 and p53 in metastasizing canine mammary adenocarcinomas versus normal mammary glands Research in Veterinary Science 2009 87 1 91 96
-
(2009)
Research in Veterinary Science
, vol.87
, Issue.1
, pp. 91-96
-
-
Klopfleisch, R.1
Gruber, A.D.2
-
46
-
-
67649964356
-
Increased expression of BRCA2 and RAD51 in lymph node metastases of canine mammary adenocarcinomas
-
Klopfleisch R., Gruber A. D., Increased expression of BRCA2 and RAD51 in lymph node metastases of canine mammary adenocarcinomas Veterinary Pathology 2009 46 3 416 422
-
(2009)
Veterinary Pathology
, vol.46
, Issue.3
, pp. 416-422
-
-
Klopfleisch, R.1
Gruber, A.D.2
-
47
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
ARTICLE 117
-
Greenbaum D., Colangelo C., Williams K., Gerstein M., Comparing protein abundance and mRNA expression levels on a genomic scale Genome Biology 2003 4 9, article 117
-
(2003)
Genome Biology
, vol.4
, Issue.9
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
48
-
-
77957232334
-
Advances in shotgun proteomics and the analysis of membrane proteomes
-
Gilmore J. M., Washburn M. P., Advances in shotgun proteomics and the analysis of membrane proteomes Journal of Proteomics 2010 73 11 2078 2091
-
(2010)
Journal of Proteomics
, vol.73
, Issue.11
, pp. 2078-2091
-
-
Gilmore, J.M.1
Washburn, M.P.2
-
49
-
-
77957226438
-
Proteome analysis of mouse model systems: A tool to model human disease and for the investigation of tissue-specific biology
-
Kislinger T., Gramolini A. O., Proteome analysis of mouse model systems: a tool to model human disease and for the investigation of tissue-specific biology Journal of Proteomics 2010 73 11 2205 2218
-
(2010)
Journal of Proteomics
, vol.73
, Issue.11
, pp. 2205-2218
-
-
Kislinger, T.1
Gramolini, A.O.2
-
50
-
-
0016711037
-
High resolution two dimensional electrophoresis of proteins
-
O'Farrell P. H., High resolution two dimensional electrophoresis of proteins Journal of Biological Chemistry 1975 250 10 4007 4021
-
(1975)
Journal of Biological Chemistry
, vol.250
, Issue.10
, pp. 4007-4021
-
-
O'Farrell, P.H.1
-
51
-
-
0016637146
-
Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals
-
Klose J., Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals HUMANGENETIK 1975 26 3 231 243
-
(1975)
HUMANGENETIK
, vol.26
, Issue.3
, pp. 231-243
-
-
Klose, J.1
-
52
-
-
0020185480
-
Isoelectric focusing in immobilized pH gradients: Principle, methodology and some applications
-
Bjellqvist B., Ek K., Giorgio Righetti P., Gianazza E., Grg A., Westermeier R., Postel W., Isoelectric focusing in immobilized pH gradients: principle, methodology and some applications Journal of Biochemical and Biophysical Methods 1982 6 4 317 339
-
(1982)
Journal of Biochemical and Biophysical Methods
, vol.6
, Issue.4
, pp. 317-339
-
-
Bjellqvist, B.1
Ek, K.2
Giorgio Righetti, P.3
Gianazza, E.4
Grg, A.5
Westermeier, R.6
Postel, W.7
-
53
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 1970 227 5259 680 685
-
(1970)
Nature
, vol.227
, Issue.5259
, pp. 680-685
-
-
Laemmli, U.K.1
-
54
-
-
0013853295
-
Use of coomassie brilliant blue R250 for the electrophoresis of microgram quantities of parotid saliva proteins on acrylamide-gel strips
-
Meyer T. S., Lamberts B. L., Use of coomassie brilliant blue R250 for the electrophoresis of microgram quantities of parotid saliva proteins on acrylamide-gel strips Biochimica et Biophysica Acta 1965 107 1 144 145
-
(1965)
Biochimica et Biophysica Acta
, vol.107
, Issue.1
, pp. 144-145
-
-
Meyer, T.S.1
Lamberts, B.L.2
-
55
-
-
0023878613
-
Improvement and simplification of low-background silver staining of proteins by using sodium dithionite
-
Rabilloud T., Carpentier G., Tarroux P., Improvement and simplification of low-background silver staining of proteins by using sodium dithionite Electrophoresis 1988 9 6 288 291
-
(1988)
Electrophoresis
, vol.9
, Issue.6
, pp. 288-291
-
-
Rabilloud, T.1
Carpentier, G.2
Tarroux, P.3
-
56
-
-
0033572464
-
A luminescent ruthenium complex for ultrasensitive detection of proteins immobilized on membrane supports
-
DOI 10.1006/abio.1999.4364
-
Berggren K., Steinberg T. H., Lauber W. M., Carroll J. A., Lopez M. F., Chernokalskaya E., Zieske L., Diwu Z., Haugland R. P., Patton W. F., A luminescent ruthenium complex for ultrasensitive detection of proteins immobilized on membrane supports Analytical Biochemistry 1999 276 2 129 143 (Pubitemid 30013033)
-
(1999)
Analytical Biochemistry
, vol.276
, Issue.2
, pp. 129-143
-
-
Berggren, K.1
Steinberg, T.H.2
Lauber, W.M.3
Carroll, J.A.4
Lopez, M.F.5
Chernokalskaya, E.6
Zieske, L.7
Diwu, Z.8
Haugland, R.P.9
Patton, W.F.10
-
57
-
-
34648834050
-
The state of the art in the analysis of two-dimensional gel electrophoresis images
-
DOI 10.1007/s00253-007-1128-0
-
Berth M., Moser F. M., Kolbe M., Bernhardt J., The state of the art in the analysis of two-dimensional gel electrophoresis images Applied Microbiology and Biotechnology 2007 76 6 1223 1243 (Pubitemid 47459790)
-
(2007)
Applied Microbiology and Biotechnology
, vol.76
, Issue.6
, pp. 1223-1243
-
-
Berth, M.1
Moser, F.M.2
Kolbe, M.3
Bernhardt, J.4
-
58
-
-
0343376097
-
Difference gel electrophoresis: A single gel method for detecting changes in protein extracts
-
nl M., Morgan M. E., Minden J. S., Difference gel electrophoresis: a single gel method for detecting changes in protein extracts Electrophoresis 1997 18 11 2071 2077 (Pubitemid 27501267)
-
(1997)
Electrophoresis
, vol.18
, Issue.11
, pp. 2071-2077
-
-
Unlu, M.1
Morgan, M.E.2
Minden, J.S.3
-
59
-
-
63649124649
-
Influence of image-analysis software on quantitation of two-dimensional gel electrophoresis data
-
Stessl M., Noe C. R., Lachmann B., Influence of image-analysis software on quantitation of two-dimensional gel electrophoresis data Electrophoresis 2009 30 2 325 328
-
(2009)
Electrophoresis
, vol.30
, Issue.2
, pp. 325-328
-
-
Stessl, M.1
Noe, C.R.2
Lachmann, B.3
-
60
-
-
71849100712
-
Chapter 30 isoelectric focusing and two-dimensional gel electrophoresis
-
Friedman D. B., Hoving S., Westermeier R., Chapter 30 isoelectric focusing and two-dimensional gel electrophoresis Methods in Enzymology 2009 463 C 515 540
-
(2009)
Methods in Enzymology
, vol.463
, Issue.C
, pp. 515-540
-
-
Friedman, D.B.1
Hoving, S.2
Westermeier, R.3
-
61
-
-
0027608882
-
Use of mass spectrometric molecular weight information to identify proteins in sequence databases
-
DOI 10.1002/bms.1200220605
-
Mann M., Hojrup P., Roepstorff P., Use of mass spectrometric molecular weight information to identify proteins in sequence databases Biological Mass Spectrometry 1993 22 6 338 345 (Pubitemid 23165446)
-
(1993)
Biological Mass Spectrometry
, vol.22
, Issue.6
, pp. 338-345
-
-
Mann, M.1
Hojrup, P.2
Roepstorff, P.3
-
62
-
-
84875463071
-
Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers
-
Hillenkamp F., Karas M., Beavis R. C., Chait B. T., Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers Analytical Chemistry 1991 63 24 1193A 1203A
-
(1991)
Analytical Chemistry
, vol.63
, Issue.24
-
-
Hillenkamp, F.1
Karas, M.2
Beavis, R.C.3
Chait, B.T.4
-
63
-
-
0027198862
-
Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
-
Henzel W. J., Billeci T. M., Stults J. T., Wong S. C., Grimley C., Watanabe C., Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases Proceedings of the National Academy of Sciences of the United States of America 1993 90 11 5011 5015 (Pubitemid 23182965)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.11
, pp. 5011-5015
-
-
Henzel, W.J.1
Billeci, T.M.2
Stults, J.T.3
Wong, S.C.4
Grimley, C.5
Watanabe, C.6
-
64
-
-
78649676210
-
Proteome of metastatic canine mammary carcinomas: Similarities to and differences from human breast cancer
-
Klopfleisch R., Klose P., Weise C., Bondzio A., Multhaup G., Einspanier R., Gruber A. D., Proteome of metastatic canine mammary carcinomas: similarities to and differences from human breast cancer Journal of Proteome Research 2010 9 12 6380 6391
-
(2010)
Journal of Proteome Research
, vol.9
, Issue.12
, pp. 6380-6391
-
-
Klopfleisch, R.1
Klose, P.2
Weise, C.3
Bondzio, A.4
Multhaup, G.5
Einspanier, R.6
Gruber, A.D.7
-
65
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi S. P., Corthals G. L., Zhang Y., Rochon Y., Aebersold R., Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology Proceedings of the National Academy of Sciences of the United States of America 2000 97 17 9390 9395 (Pubitemid 30650785)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.17
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
66
-
-
0344898564
-
Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography
-
DOI 10.1002/(SICI)1522-2683(19990801)20:11<2181::AID-ELPS2181>3.0. CO;2-Q
-
Fountoulakis M., Takcs M. F., Berndt P., Langen H., Takcs B., Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography Electrophoresis 1999 20 11 2181 2195 (Pubitemid 29413308)
-
(1999)
Electrophoresis
, vol.20
, Issue.11
, pp. 2181-2195
-
-
Fountoulakis, M.1
Takacs, M.-F.2
Berndt, P.3
Langen, H.4
Takacs, B.5
-
67
-
-
0034056940
-
The dynamic range of protein expression: A challenge for proteomic research
-
DOI 10.1002/(SICI)1522-2683(20000401)21:6<1104::AID-ELPS1104>3.0. CO;2-C
-
Corthals C. L., Wasinger V. C., Hochstrasser D. F., Sanchez J. C., The dynamic range of protein expression: a challenge for proteomic research Electrophoresis 2000 21 6 1104 1115 (Pubitemid 30230776)
-
(2000)
Electrophoresis
, vol.21
, Issue.6
, pp. 1104-1115
-
-
Corthals, C.L.1
Wasinger, V.C.2
Hochstrasser, D.F.3
Sanchez, J.-C.4
-
68
-
-
0034090053
-
Preparative two-dimensional gel electrophoresis with agarose gels in the first dimension for high molecular mass proteins
-
DOI 10.1002/(SICI)1522-2683(20000501)21:9<1653::AID-ELPS1653>3.0. CO;2-9
-
Oh-Ishi M., Satoh M., Maeda T., Preparative two-dimensional gel electrophoresis with agarose gels in the first dimension for high molecular mass proteins Electrophoresis 2000 21 9 1653 1669 (Pubitemid 30394858)
-
(2000)
Electrophoresis
, vol.21
, Issue.9
, pp. 1653-1669
-
-
Oh-Ishi, M.1
Satoh, M.2
Maeda, T.3
-
69
-
-
0034066471
-
Membrane proteins and proteomics: Un amour impossible?
-
DOI 10.1002/(SICI)1522-2683(20000401)21:6<1054::AID-ELPS1054>3.0. CO;2-8
-
Santoni V., Molloy M., Rabilloud T., Membrane proteins and proteomics: un amour impossible? Electrophoresis 2000 21 6 1054 1070 (Pubitemid 30230772)
-
(2000)
Electrophoresis
, vol.21
, Issue.6
, pp. 1054-1070
-
-
Santoni, V.1
Molloy, M.2
Rabilloud, T.3
-
70
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
DOI 10.1038/85686
-
Washburn M. P., Wolters D., Yates J. R., Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nature Biotechnology 2001 19 3 242 247 (Pubitemid 32220565)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates, J.R.3
-
71
-
-
67650602911
-
Multidimensional protein identification technology for clinical proteomic analysis
-
Mauri P., Scigelova M., Multidimensional protein identification technology for clinical proteomic analysis Clinical Chemistry and Laboratory Medicine 2009 47 6 636 645
-
(2009)
Clinical Chemistry and Laboratory Medicine
, vol.47
, Issue.6
, pp. 636-645
-
-
Mauri, P.1
Scigelova, M.2
-
72
-
-
34548293752
-
Multidimensional separations-based shotgun proteomics
-
DOI 10.1021/cr068279a
-
Fournier M. L., Gilmore J. M., Martin-Brown S. A., Washburn M. P., Multidimensional separations-based shotgun proteomics Chemical Reviews 2007 107 8 3654 3686 (Pubitemid 47322747)
-
(2007)
Chemical Reviews
, vol.107
, Issue.8
, pp. 3654-3686
-
-
Fournier, M.L.1
Gilmore, J.M.2
Martin-Brown, S.A.3
Washburn, M.P.4
-
73
-
-
34447249066
-
Characterization of transferrin glycoforms in human serum by CE-UV and CE-ESI-MS
-
DOI 10.1002/elps.200600648
-
Sanz-Nebot V., Balaguer E., Benavente F., Neus C., Barbosa J., Characterization of transferrin glycoforms in human serum by CE-UV and CE-ESI-MS Electrophoresis 2007 28 12 1949 1957 (Pubitemid 47040399)
-
(2007)
Electrophoresis
, vol.28
, Issue.12
, pp. 1949-1957
-
-
Sanz-Nebot, V.1
Balaguer, E.2
Benavente, F.3
Neususs, C.4
Barbosa, J.5
-
74
-
-
65549129509
-
Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics
-
Kline K. G., Finney G. L., Wu C. C., Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics Briefings in Functional Genomics and Proteomics 2009 8 2 114 125
-
(2009)
Briefings in Functional Genomics and Proteomics
, vol.8
, Issue.2
, pp. 114-125
-
-
Kline, K.G.1
Finney, G.L.2
Wu, C.C.3
-
76
-
-
26444506068
-
Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling
-
DOI 10.1021/ac050846r
-
Zybailov B., Coleman M. K., Florens L., Washburn M. P., Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling Analytical Chemistry 2005 77 19 6218 6224 (Pubitemid 41436955)
-
(2005)
Analytical Chemistry
, vol.77
, Issue.19
, pp. 6218-6224
-
-
Zybailov, B.1
Coleman, M.K.2
Florens, L.3
Washburn, M.P.4
-
77
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
DOI 10.1021/ac0498563
-
Liu H., Sadygov R. G., Yates J. R., A model for random sampling and estimation of relative protein abundance in shotgun proteomics Analytical Chemistry 2004 76 14 4193 4201 (Pubitemid 38943698)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
78
-
-
58149383900
-
High quality catalog of proteotypic peptides from human heart
-
Kline K. G., Frewen B., Bristow M. R., MacCoss M. J., Wu C. C., High quality catalog of proteotypic peptides from human heart Journal of Proteome Research 2008 7 11 5055 5061
-
(2008)
Journal of Proteome Research
, vol.7
, Issue.11
, pp. 5055-5061
-
-
Kline, K.G.1
Frewen, B.2
Bristow, M.R.3
MacCoss, M.J.4
Wu, C.C.5
-
79
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
DOI 10.1073/pnas.96.12.6591
-
Oda Y., Huang K., Cross F. R., Cowburn D., Chait B. T., Accurate quantitation of protein expression and site-specific phosphorylation Proceedings of the National Academy of Sciences of the United States of America 1999 96 12 6591 6596 (Pubitemid 29274927)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.12
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
80
-
-
4444346217
-
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
-
DOI 10.1021/ac049208j
-
Wu C. C., MacCoss M. J., Howell K. E., Matthews D. E., Yates J. R., Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis Analytical Chemistry 2004 76 17 4951 4959 (Pubitemid 39180319)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.17
, pp. 4951-4959
-
-
Wu, C.C.1
MacCoss, M.J.2
Howell, K.E.3
Matthews, D.E.4
Yates III, J.R.5
-
81
-
-
31144433860
-
Composition of pseudorabies virus particles lacking tegument protein US3, UL47, or UL49 or envelope glycoprotein E
-
DOI 10.1128/JVI.80.3.1332-1339.2006
-
Michael K., Klupp B. G., Mettenleiter T. C., Karger A., Composition of pseudorabies virus particles lacking tegument protein US3, UL47, or UL49 or envelope glycoprotein E Journal of Virology 2006 80 3 1332 1339 (Pubitemid 43134090)
-
(2006)
Journal of Virology
, vol.80
, Issue.3
, pp. 1332-1339
-
-
Michael, K.1
Klupp, B.G.2
Mettenleiter, T.C.3
Karger, A.4
-
82
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
DOI 10.1038/13690
-
Gygi S. P., Rist B., Gerber S. A., Turecek F., Gelb M. H., Aebersold R., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nature Biotechnology 1999 17 10 994 999 (Pubitemid 29474856)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
83
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross P. L., Huang Y. N., Marchese J. N., Williamson B., Parker K., Hattan S., Khainovski N., Pillai S., Dey S., Daniels S., Purkayastha S., Juhasz P., Martin S., Bartlet-Jones M., He F., Jacobson A., Pappin D. J., Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Molecular and Cellular Proteomics 2004 3 12 1154 1169
-
(2004)
Molecular and Cellular Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
84
-
-
53849144620
-
Strategies for discovering novel cancer biomarkers through utilization of emerging technologies
-
Kulasingam V., Diamandis E. P., Strategies for discovering novel cancer biomarkers through utilization of emerging technologies Nature Clinical Practice Oncology 2008 5 10 588 599
-
(2008)
Nature Clinical Practice Oncology
, vol.5
, Issue.10
, pp. 588-599
-
-
Kulasingam, V.1
Diamandis, E.P.2
-
85
-
-
65949092082
-
Embryonal serum alpha- globulin and its synthesis by transplantable mouse hepatomas
-
Abelev G. I., Perova S. D., Khramkova N. I., Postnikova Z. A., Irlin I. S., Embryonal serum alpha- globulin and its synthesis by transplantable mouse hepatomas Biokhimiia 1963 28 625 634
-
(1963)
Biokhimiia
, vol.28
, pp. 625-634
-
-
Abelev, G.I.1
Perova, S.D.2
Khramkova, N.I.3
Postnikova, Z.A.4
Irlin, I.S.5
-
86
-
-
76549177140
-
Demonstration of tumor-specific antigens in human colonic carcinomata by immunological tolerance and absorption techniques
-
Gold P., Freedman S. O., Demonstration of tumor-specific antigens in human colonic carcinomata by immunological tolerance and absorption techniques The Journal of Experimental Medicine 1965 121 439 462
-
(1965)
The Journal of Experimental Medicine
, vol.121
, pp. 439-462
-
-
Gold, P.1
Freedman, S.O.2
-
87
-
-
77953670526
-
Biomarkers in veterinary cancer screening: Applications, limitations and expectations
-
Henry C. J., Biomarkers in veterinary cancer screening: applications, limitations and expectations Veterinary Journal 2010 185 1 10 14
-
(2010)
Veterinary Journal
, vol.185
, Issue.1
, pp. 10-14
-
-
Henry, C.J.1
-
88
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
DOI 10.1038/nature04338
-
Lindblad-Toh K., Wade C. M., Mikkelsen T. S., Karlsson E. K., Jaffe D. B., Kamal M., Clamp M., Chang J. L., Kulbokas E. J., Zody M. C., Mauceli E., Xie X., Breen M., Wayne R. K., Ostrander E. A., Ponting C. P., Galibert F., Smith D. R., DeJong P. J., Kirkness E., Alvarez P., Biagi T., Brockman W., Butler J., Chin C. W., Cook A., Cuff J., Daly M. J., DeCaprio D., Gnerre S., Grabherr M., Kellis M., Kleber M., Bardeleben C., Goodstadt L., Heger A., Hitte C., Kim L., Koepfli K. P., Parker H. G., Pollinger J. P., Searle S. M. J., Sutter N. B., Thomas R., Webber C., Lander E. S., Genome sequence, comparative analysis and haplotype structure of the domestic dog Nature 2005 438 7069 803 819 (Pubitemid 41753059)
-
(2005)
Nature
, vol.438
, Issue.7069
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
Karlsson, E.K.4
Jaffe, D.B.5
Kamal, M.6
Clamp, M.7
Chang, J.L.8
Kulbokas III, E.J.9
Zody, M.C.10
Mauceli, E.11
Xie, X.12
Breen, M.13
Wayne, R.K.14
Ostrander, E.A.15
Ponting, C.P.16
Galibert, F.17
Smith, D.R.18
DeJong, P.J.19
Kirkness, E.20
Alvarez, P.21
Biagi, T.22
Brockman, W.23
Butler, J.24
Chin, C.-W.25
Cook, A.26
Cuff, J.27
Daly, M.J.28
DeCaprio, D.29
Gnerre, S.30
Grabherr, M.31
Kellis, M.32
Kleber, M.33
Bardeleben, C.34
Goodstadt, L.35
Heger, A.36
Hitte, C.37
Kim, L.38
Koepfli, K.-P.39
Parker, H.G.40
Pollinger, J.P.41
Searle, S.M.J.42
Sutter, N.B.43
Thomas, R.44
Webber, C.45
Lander, E.S.46
more..
-
89
-
-
58149265606
-
The chicken genome
-
Burt D. W., The chicken genome Genome Dynamics 2006 2 123 137
-
(2006)
Genome Dynamics
, vol.2
, pp. 123-137
-
-
Burt, D.W.1
-
90
-
-
65649102662
-
Unlocking the bovine genome
-
Tellam R. L., Lemay D. G., Van Tassell C. P., Lewin H. A., Worley K. C., Elsik C. G., Unlocking the bovine genome BMC Genomics 2009 10 193
-
(2009)
BMC Genomics
, vol.10
, pp. 193
-
-
Tellam, R.L.1
Lemay, D.G.2
Van Tassell, C.P.3
Lewin, H.A.4
Worley, K.C.5
Elsik, C.G.6
-
91
-
-
58149260730
-
The feline genome
-
Murphy W. J., The feline genome Genome Dynamics 2006 2 60 68
-
(2006)
Genome Dynamics
, vol.2
, pp. 60-68
-
-
Murphy, W.J.1
-
93
-
-
63849283060
-
Serum biomarker profiling in cancer studies: A question of standardisation?
-
Matharoo-Ball B., Miles A. K., Creaser C. S., Ball G., Rees R., Serum biomarker profiling in cancer studies: a question of standardisation? Veterinary and Comparative Oncology 2008 6 4 224 247
-
(2008)
Veterinary and Comparative Oncology
, vol.6
, Issue.4
, pp. 224-247
-
-
Matharoo-Ball, B.1
Miles, A.K.2
Creaser, C.S.3
Ball, G.4
Rees, R.5
-
94
-
-
0037454226
-
Validating biomarkers: Early detection research network launches first phase III study
-
Reynolds T., Validating biomarkers: early detection research network launches first phase III study Journal of the National Cancer Institute 2003 95 6 422 423 (Pubitemid 36432409)
-
(2003)
Journal of the National Cancer Institute
, vol.95
, Issue.6
, pp. 422-423
-
-
Reynolds, T.1
-
95
-
-
0242653640
-
Clinical proteomics: Written in blood
-
Liotta L. A., Ferrari M., Petricoin E., Clinical proteomics: written in blood Nature 2003 425 6961 905
-
(2003)
Nature
, vol.425
, Issue.6961
, pp. 905
-
-
Liotta, L.A.1
Ferrari, M.2
Petricoin, E.3
-
96
-
-
68049125059
-
The evolving role of mass spectrometry in cancer biomarker discovery
-
Wang P., Whiteaker J. R., Paulovich A. G., The evolving role of mass spectrometry in cancer biomarker discovery Cancer Biology and Therapy 2009 8 12 1083 1094
-
(2009)
Cancer Biology and Therapy
, vol.8
, Issue.12
, pp. 1083-1094
-
-
Wang, P.1
Whiteaker, J.R.2
Paulovich, A.G.3
-
97
-
-
55349095003
-
Protein quantitation through targeted mass spectrometry: The way out of biomarker purgatory?
-
Carr S. A., Anderson L., Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory? Clinical Chemistry 2008 54 11 1749 1752
-
(2008)
Clinical Chemistry
, vol.54
, Issue.11
, pp. 1749-1752
-
-
Carr, S.A.1
Anderson, L.2
-
98
-
-
66949116701
-
A human proteome detection and quantitation project
-
Anderson N. L., Anderson N. G., Pearson T. W., Borchers C. H., Paulovich A. G., Patterson S. D., Gillette M., Aebersold R., Carr S. A., A human proteome detection and quantitation project Molecular and Cellular Proteomics 2009 8 5 883 886
-
(2009)
Molecular and Cellular Proteomics
, vol.8
, Issue.5
, pp. 883-886
-
-
Anderson, N.L.1
Anderson, N.G.2
Pearson, T.W.3
Borchers, C.H.4
Paulovich, A.G.5
Patterson, S.D.6
Gillette, M.7
Aebersold, R.8
Carr, S.A.9
-
99
-
-
39749202894
-
Using Microarray Analysis as a Prognostic and Predictive Tool in Oncology: Focus on Breast Cancer and Normal Tissue Toxicity
-
DOI 10.1016/j.semradonc.2007.10.007, PII S1053429607000987
-
Nuyten D. S. A., van de Vijver M. J., Using microarray analysis as a prognostic and predictive tool in Oncology: focus oVn breast cancer and normal tissue toxicity Seminars in Radiation Oncology 2008 18 2 105 114 (Pubitemid 351296454)
-
(2008)
Seminars in Radiation Oncology
, vol.18
, Issue.2
, pp. 105-114
-
-
Nuyten, D.S.A.1
Van De Vijver, M.J.2
-
100
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
DOI 10.1038/415530a
-
van't Veer L. J., Dai H., Van de Vijver M. J., He Y. D., Hart A. A. M., Mao M., Peterse H. L., Van Der Kooy K., Marton M. J., Witteveen A. T., Schreiber G. J., Kerkhoven R. M., Roberts C., Linsley P. S., Bernards R., Friend S. H., Gene expression profiling predicts clinical outcome of breast cancer Nature 2002 415 6871 530 536 (Pubitemid 34130608)
-
(2002)
Nature
, vol.415
, Issue.6871
, pp. 530-536
-
-
Van't Veer, L.J.1
Dai, H.2
Van De Vijver, M.J.3
He, Y.D.4
Hart, A.A.M.5
Mao, M.6
Peterse, H.L.7
Van Der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
101
-
-
77954556452
-
The combined expression pattern of BMP2, LTBP4, and DERL1 discriminates malignant from benign canine mammary tumors
-
Klopfleisch R., Klose P., Gruber A. D., The combined expression pattern of BMP2, LTBP4, and DERL1 discriminates malignant from benign canine mammary tumors Veterinary Pathology 2010 47 3 446 454
-
(2010)
Veterinary Pathology
, vol.47
, Issue.3
, pp. 446-454
-
-
Klopfleisch, R.1
Klose, P.2
Gruber, A.D.3
-
102
-
-
78049523510
-
Metastatic canine mammary carcinomas can be identified by a gene expression profile that partly overlaps with human breast cancer profiles
-
Klopfleisch R., Lenze D., Hummel M., Gruber A. D., Metastatic canine mammary carcinomas can be identified by a gene expression profile that partly overlaps with human breast cancer profiles BMC Cancer 2010 10, article 618
-
(2010)
BMC Cancer
, pp. 10618
-
-
Klopfleisch, R.1
Lenze, D.2
Hummel, M.3
Gruber, A.D.4
-
103
-
-
13444249852
-
Prediction of cancer outcome with microarrays: A multiple random validation strategy
-
DOI 10.1016/S0140-6736(05)17866-0
-
Michiels S., Koscielny S., Hill C., Prediction of cancer outcome with microarrays: a multiple random validation strategy Lancet 2005 365 9458 488 492 (Pubitemid 40215731)
-
(2005)
Lancet
, vol.365
, Issue.9458
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
-
104
-
-
84878767975
-
The metastatic cascade is reflected in the transcriptome of metastatic canine mammary carcinomas
-
In press
-
Klopfleisch R., Lenze D., Hummel M., Gruber A. D., The metastatic cascade is reflected in the transcriptome of metastatic canine mammary carcinomas. Veterinary Journal. In press
-
Veterinary Journal
-
-
Klopfleisch, R.1
Lenze, D.2
Hummel, M.3
Gruber, A.D.4
-
105
-
-
65249091846
-
Comparative expression pathway analysis of human and canine mammary tumors
-
Uva P., Aurisicchio L., Watters J., Loboda A., Kulkarni A., Castle J., Palombo F., Viti V., Mesiti G., Zappulli V., Marconato L., Abramo F., Ciliberto G., Lahm A., La Monica N., de Rinaldis E., Comparative expression pathway analysis of human and canine mammary tumors BMC Genomics 2009 10, article 135
-
(2009)
BMC Genomics
, pp. 10135
-
-
Uva, P.1
Aurisicchio, L.2
Watters, J.3
Loboda, A.4
Kulkarni, A.5
Castle, J.6
Palombo, F.7
Viti, V.8
Mesiti, G.9
Zappulli, V.10
Marconato, L.11
Abramo, F.12
Ciliberto, G.13
Lahm, A.14
La Monica, N.15
De Rinaldis, E.16
-
106
-
-
67749101213
-
Transcriptomic profile of two canine mammary cancer cell lines with different proliferative and anti-apoptotic potential
-
supplement 1
-
Krol M., Pawlowski K. M., Skierski J., Rao N. A.S., Hellmen E., Mol J. A., Motyl T., Transcriptomic profile of two canine mammary cancer cell lines with different proliferative and anti-apoptotic potential Journal of Physiology and Pharmacology 2009 60 supplement 1 95 106
-
(2009)
Journal of Physiology and Pharmacology
, vol.60
, pp. 95-106
-
-
Krol, M.1
Pawlowski, K.M.2
Skierski, J.3
Rao, N.A.S.4
Hellmen, E.5
Mol, J.A.6
Motyl, T.7
-
107
-
-
67749143727
-
Gene expression profiles of progestin-induced canine mammary hyperplasia and spontaneous mammary tumors
-
supplement 1
-
Rao N. A.S., Van Wolferen M. E., Gracanin A., Bhatti S. F.M., Krol M., Holstege F. C., Mol J. A., Gene expression profiles of progestin-induced canine mammary hyperplasia and spontaneous mammary tumors Journal of Physiology and Pharmacology 2009 60 supplement 1 73 84
-
(2009)
Journal of Physiology and Pharmacology
, vol.60
, pp. 73-84
-
-
Rao, N.A.S.1
Van Wolferen, M.E.2
Gracanin, A.3
Bhatti, S.F.M.4
Krol, M.5
Holstege, F.C.6
Mol, J.A.7
-
108
-
-
47249123731
-
CDNA microarray profiles of canine mammary tumour cell lines reveal deregulated pathways pertaining to their phenotype
-
DOI 10.1111/j.1365-2052.2008.01733.x
-
Rao N. A. S., Van Wolferen M. E., Van Den Ham R., Van Leenen D., Groot Koerkamp M. J. A., Holstege F. C. P., Mol J. A., cDNA microarray profiles of canine mammary tumour cell lines reveal deregulated pathways pertaining to their phenotype Animal Genetics 2008 39 4 333 345 (Pubitemid 351989267)
-
(2008)
Animal Genetics
, vol.39
, Issue.4
, pp. 333-345
-
-
Rao, N.A.S.1
Van Wolferen, M.E.2
Van Den Ham, R.3
Van Leenen, D.4
Groot Koerkamp, M.J.A.5
Holstege, F.C.P.6
Mol, J.A.7
-
109
-
-
34247891728
-
Proteomics of canine lymphoma identifies potential cancer-specific protein markers
-
DOI 10.1158/1078-0432.CCR-06-2699
-
McCaw D. L., Chan A. S., Stegner A. L., Mooney B., Bryan J. N., Turnquist S. E., Henry C. J., Alexander H., Alexander S., Proteomics of canine lymphoma identifies potential cancer-specific protein markers Clinical Cancer Research 2007 13 8 2496 2503 (Pubitemid 46698602)
-
(2007)
Clinical Cancer Research
, vol.13
, Issue.8
, pp. 2496-2503
-
-
McCaw, D.L.1
Chan, A.S.2
Stegner, A.L.3
Mooney, B.4
Bryan, J.N.5
Turnquist, S.E.6
Henry, C.J.7
Alexander, H.8
Alexander, S.9
-
110
-
-
80053930592
-
Is there a malignant progression associated with a linear change in protein expression levels from normal canine mammary gland to metastatic mammary tumors?
-
Klose P., Weise C., Bondzio A., Multhaup G., Einspanier R., Gruber A. D., Klopfleisch R., Is there a malignant progression associated with a linear change in protein expression levels from normal canine mammary gland to metastatic mammary tumors? Journal of Proteome Research 2011 10 10 4405 4415
-
(2011)
Journal of Proteome Research
, vol.10
, Issue.10
, pp. 4405-4415
-
-
Klose, P.1
Weise, C.2
Bondzio, A.3
Multhaup, G.4
Einspanier, R.5
Gruber, A.D.6
Klopfleisch, R.7
-
111
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou C. M., Srile T., Eisen M. B., Van De Rijn M., Jeffrey S. S., Ress C. A., Pollack J. R., Ross D. T., Johnsen H., Akslen L. A., Fluge., Pergammenschlkov A., Williams C., Zhu S. X., Lnning P. E., Brresen-Dale A. L., Brown P. O., Botstein D., Molecular portraits of human breast tumours Nature 2000 406 6797 747 752
-
(2000)
Nature
, vol.406
, Issue.6797
, pp. 747-752
-
-
Perou, C.M.1
Srile, T.2
Eisen, M.B.3
Van De Rijn, M.4
Jeffrey, S.S.5
Ress, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
Fluge11
Pergammenschlkov, A.12
Williams, C.13
Zhu, S.X.14
Lnning, P.E.15
Brresen-Dale, A.L.16
Brown, P.O.17
Botstein, D.18
-
112
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
DOI 10.1073/pnas.191367098
-
Srlie T., Perou C. M., Tibshirani R., Aas T., Geisler S., Johnsen H., Hastie T., Eisen M. B., Van De Rijn M., Jeffrey S. S., Thorsen T., Quist H., Matese J. C., Brown P. O., Botstein D., Lnning P. E., Brresen-Dale A. L., Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications Proceedings of the National Academy of Sciences of the United States of America 2001 98 19 10869 10874 (Pubitemid 32878711)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.19
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
Van De Rijn, M.9
Jeffrey, S.S.10
Thorsen, T.11
Quist, H.12
Matese, J.C.13
Brown, P.O.14
Botstein, D.15
Lonning, P.E.16
Borresen-Dale, A.-L.17
-
113
-
-
19344363035
-
Gene expression signature of fibroblast serum response predicts human cancer progression: Similarities between tumors and wounds
-
Chang H. Y., Sneddon J. B., Alizadeh A. A., Sood R., West R. B., Montgomery K., Chi J. T., Van De Rijn M., Botstein D., Brown P. O., Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds PLoS Biology 2004 2 2 E7
-
(2004)
PLoS Biology
, vol.2
, Issue.2
, pp. 7
-
-
Chang, H.Y.1
Sneddon, J.B.2
Alizadeh, A.A.3
Sood, R.4
West, R.B.5
Montgomery, K.6
Chi, J.T.7
Van De Rijn, M.8
Botstein, D.9
Brown, P.O.10
-
114
-
-
0022891340
-
Tumors: Wounds that do not heal: Similarities between tumor stroma generation and wound healing
-
Dvorak H. F., Tumors: wounds that do not heal: similarities between tumor stroma generation and wound healing New England Journal of Medicine 1986 315 26 1650 1659 (Pubitemid 17052899)
-
(1986)
New England Journal of Medicine
, vol.315
, Issue.26
, pp. 1650-1659
-
-
Dvorak, H.F.1
-
115
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
DOI 10.1073/pnas.0409462102
-
Chang H. Y., Nuyten D. S. A., Sneddon J. B., Hastie T., Tibshirani R., Srlie T., Dai H., He Y. D., Van'T Veer L. J., Bartelink H., Van De Rijn M., Brown P. O., Van De Vijver M. J., Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival Proceedings of the National Academy of Sciences of the United States of America 2005 102 10 3738 3743 (Pubitemid 40354681)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.10
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.A.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sorlie, T.6
Dai, H.7
He, Y.D.8
Van'T Veer, L.J.9
Bartelink, H.10
Van De Rijn, M.11
Brown, P.O.12
Van De Vijver, M.J.13
|