-
1
-
-
56649116112
-
Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface
-
L. Poulsen, M.J. Soe, D. Snakenborg, L.B. Moller, and M. Dufva, (2008) Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface. Nucleic Acid
-
(2008)
Nucleic Acid
-
-
Poulsen, L.1
Soe, M.J.2
Snakenborg, D.3
Moller, L.B.4
Dufva, M.5
-
2
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
L Shi LH Reid WD Jones R Shippy JA Warrington SC Baker, et al. 2006 The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nat Biotechnol 24 1151 1161
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
-
3
-
-
33645808222
-
Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
-
Y Wang C Barbacioru F Hyland W Xiao KL Hunkapiller J Blake F Chan C Gonzalez L Zhang RR Samaha 2006 Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays BMC Genomics 7 59
-
(2006)
BMC Genomics
, vol.7
, pp. 59
-
-
Wang, Y.1
Barbacioru, C.2
Hyland, F.3
Xiao, W.4
Hunkapiller, K.L.5
Blake, J.6
Chan, F.7
Gonzalez, C.8
Zhang, L.9
Samaha, R.R.10
-
4
-
-
35748951614
-
Direct selection of human genomic loci by microarray hybridization
-
TJ Albert MN Molla DM Muzny L Nazareth D Wheeler X Song TA Richmond CM Middle MJ Rodesch CJ Packard GM Weinstock RA Gibbs 2007 Direct selection of human genomic loci by microarray hybridization Nat Methods 4 903 905
-
(2007)
Nat Methods
, vol.4
, pp. 903-905
-
-
Albert, T.J.1
Molla, M.N.2
Muzny, D.M.3
Nazareth, L.4
Wheeler, D.5
Song, X.6
Richmond, T.A.7
Middle, C.M.8
Rodesch, M.J.9
Packard, C.J.10
Weinstock, G.M.11
Gibbs, R.A.12
-
5
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
TR Hughes M Mao AR Jones J Burchard MJ Marton KW Shannon SM Lefkowitz M Ziman JM Schelter MR Meyer S Kobayashi C Davis H Dai YD He SB Stephaniants G Cavet WL Walker A West E Coffey DD Shoemaker R Stoughton AP Blanchard SH Friend PS Linsley 2001 Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer Nat Biotechnol 19 342 347
-
(2001)
Nat Biotechnol
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Shoemaker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
-
6
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
J SantaLucia Jr 1998 A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics Proc Natl Acad Sci U S A 95 1460 1465
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 1460-1465
-
-
Santalucia Jr, J.1
-
8
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
M Zuker 2003 Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res 31 3406 3415
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
9
-
-
23144447636
-
OligoWiz 2.0 - Integrating sequence feature annotation into the design of microarray probes
-
R Wernersson HB Nielsen 2005 OligoWiz 2.0 - integrating sequence feature annotation into the design of microarray probes Nucleic Acids Res 33 W611 615
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 611-615
-
-
Wernersson, R.1
Nielsen, H.B.2
-
10
-
-
25444450344
-
Thermodynamics of DNA hybridization on gold nanoparticles
-
J Xu SL Craig 2005 Thermodynamics of DNA hybridization on gold nanoparticles J Am Chem Soc 127 13227 13231
-
(2005)
J Am Chem Soc
, vol.127
, pp. 13227-13231
-
-
Xu, J.1
Craig, S.L.2
-
11
-
-
33646129668
-
Detection of mutations using microarrays of poly(C) 10-poly(T) 10 modified DNA probes immobilized on agarose films
-
M Dufva J Petersen M Stoltenborg H Birgens CB Christensen 2006 Detection of mutations using microarrays of poly(C) 10-poly(T) 10 modified DNA probes immobilized on agarose films Anal Biochem 352 188 197
-
(2006)
Anal Biochem
, vol.352
, pp. 188-197
-
-
Dufva, M.1
Petersen, J.2
Stoltenborg, M.3
Birgens, H.4
Christensen, C.B.5
-
14
-
-
39149131378
-
Use of a multi-thermal washer for DNA microarrays simplifies probe design and gives robust genotyping assays
-
J Petersen L Poulsen S Petronis H Birgens M Dufva 2008 Use of a multi-thermal washer for DNA microarrays simplifies probe design and gives robust genotyping assays Nucleic Acids Res 36 e10
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 10
-
-
Petersen, J.1
Poulsen, L.2
Petronis, S.3
Birgens, H.4
Dufva, M.5
-
15
-
-
0037319670
-
Surface electrostatic effects in oligonucleotide microarrays: Control and optimization of binding thermodynamics
-
A Vainrub BM Pettitt 2003 Surface electrostatic effects in oligonucleotide microarrays: control and optimization of binding thermodynamics Biopolymers 68 265 270
-
(2003)
Biopolymers
, vol.68
, pp. 265-270
-
-
Vainrub, A.1
Pettitt, B.M.2
-
17
-
-
17444453124
-
Functionalization of poly(methyl methacrylate) (PMMA) as a substrate for DNA microarrays
-
F Fixe M Dufva P Telleman CB Christensen 2004 Functionalization of poly(methyl methacrylate) (PMMA) as a substrate for DNA microarrays Nucleic Acids Res 32 e9
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Fixe, F.1
Dufva, M.2
Telleman, P.3
Christensen, C.B.4
-
18
-
-
0030862620
-
Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays
-
MS Shchepinov SC Case-Green EM Southern 1997 Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays Nucleic Acids Res 25 1155 1161
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1155-1161
-
-
Shchepinov, M.S.1
Case-Green, S.C.2
Southern, E.M.3
-
19
-
-
0037065343
-
Hybridization of mismatched or partially matched DNA at surfaces
-
AW Peterson LK Wolf RM Georgiadis 2002 Hybridization of mismatched or partially matched DNA at surfaces J Am Chem Soc 124 14601 14607
-
(2002)
J Am Chem Soc
, vol.124
, pp. 14601-14607
-
-
Peterson, A.W.1
Wolf, L.K.2
Georgiadis, R.M.3
-
20
-
-
33846391260
-
Hybridization at a surface: The role of spacers in DNA microarrays
-
A Halperin A Buhot EB Zhulina 2006 Hybridization at a surface: the role of spacers in DNA microarrays Langmuir 22 11290 11304
-
(2006)
Langmuir
, vol.22
, pp. 11290-11304
-
-
Halperin, A.1
Buhot, A.2
Zhulina, E.B.3
-
21
-
-
22144466500
-
Surface density dependence of PCR amplicon hybridization on PNA/DNA probe layers
-
D Yao J Kim F Yu PE Nielsen EK Sinner W Knoll 2005 Surface density dependence of PCR amplicon hybridization on PNA/DNA probe layers Biophys J 88 2745 2751
-
(2005)
Biophys J
, vol.88
, pp. 2745-2751
-
-
Yao, D.1
Kim, J.2
Yu, F.3
Nielsen, P.E.4
Sinner, E.K.5
Knoll, W.6
-
22
-
-
33646181184
-
A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants
-
J Bishop S Blair AM Chagovetz 2006 A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants Biophys J 90 831 840
-
(2006)
Biophys J
, vol.90
, pp. 831-840
-
-
Bishop, J.1
Blair, S.2
Chagovetz, A.M.3
-
23
-
-
34848880835
-
Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; Analyzing variations in immune regulator genes of hay-fever samples
-
J Pullat R Fleischer N Becker M Beier A Metspalu JD Hoheisel 2007 Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; analyzing variations in immune regulator genes of hay-fever samples BMC Genomics 8 282
-
(2007)
BMC Genomics
, vol.8
, pp. 282
-
-
Pullat, J.1
Fleischer, R.2
Becker, N.3
Beier, M.4
Metspalu, A.5
Hoheisel, J.D.6
-
24
-
-
47549112146
-
Innovative integrated system for real-time measurement of hybridization and melting on standard format microarrays
-
Y Marcy PY Cousin M Rattier G Cerovic G Escalier G Bena M Gueron L McDonagh F le Boulaire H Benisty C Weisbuch JC Avarre 2008 Innovative integrated system for real-time measurement of hybridization and melting on standard format microarrays Biotechniques 44 913 920
-
(2008)
Biotechniques
, vol.44
, pp. 913-920
-
-
Marcy, Y.1
Cousin, P.Y.2
Rattier, M.3
Cerovic, G.4
Escalier, G.5
Bena, G.6
Gueron, M.7
McDonagh, L.8
Le Boulaire, F.9
Benisty, H.10
Weisbuch, C.11
Avarre, J.C.12
-
25
-
-
0032903821
-
Dynamic allele-specific hybridization. A new method for scoring single nucleotide polymorphisms
-
WM Howell M Jobs U Gyllensten AJ Brookes 1999 Dynamic allele-specific hybridization. A new method for scoring single nucleotide polymorphisms Nat Biotechnol 17 87 88
-
(1999)
Nat Biotechnol
, vol.17
, pp. 87-88
-
-
Howell, W.M.1
Jobs, M.2
Gyllensten, U.3
Brookes, A.J.4
-
26
-
-
33747872288
-
Recirculating flow accelerates DNA microarray hybridization in a microfluidic device
-
HH Lee J Smoot Z McMurray DA Stahl P Yager 2006 Recirculating flow accelerates DNA microarray hybridization in a microfluidic device Lab Chip 6 1163 1170
-
(2006)
Lab Chip
, vol.6
, pp. 1163-1170
-
-
Lee, H.H.1
Smoot, J.2
McMurray, Z.3
Stahl, D.A.4
Yager, P.5
-
28
-
-
9344231965
-
DNA analysis and diagnostics on oligonucleotide microchips
-
G Yershov V Barsky A Belgovskiy E Kirillov E Kreindlin I Ivanov S Parinov D Guschin A Drobishev S Dubiley A Mirzabekov 1996 DNA analysis and diagnostics on oligonucleotide microchips Proc Natl Acad Sci U S A 93 4913 4918
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 4913-4918
-
-
Yershov, G.1
Barsky, V.2
Belgovskiy, A.3
Kirillov, E.4
Kreindlin, E.5
Ivanov, I.6
Parinov, S.7
Guschin, D.8
Drobishev, A.9
Dubiley, S.10
Mirzabekov, A.11
-
29
-
-
65549147184
-
Real-time DNA microarrays: Reality check
-
A Chagovetz S Blair 2009 Real-time DNA microarrays: reality check Biochem Soc Trans 37 471 475
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 471-475
-
-
Chagovetz, A.1
Blair, S.2
-
30
-
-
0038781886
-
DASH-2: Flexible, low-cost, and high-throughput SNP genotyping by dynamic allele-specific hybridization on membrane arrays
-
M Jobs WM Howell L Stromqvist T Mayr AJ Brookes 2003 DASH-2: flexible, low-cost, and high-throughput SNP genotyping by dynamic allele-specific hybridization on membrane arrays Genome Res 13 916 924
-
(2003)
Genome Res
, vol.13
, pp. 916-924
-
-
Jobs, M.1
Howell, W.M.2
Stromqvist, L.3
Mayr, T.4
Brookes, A.J.5
-
31
-
-
0036787662
-
Reusable platforms for high-throughput on-chip temperature gradient assays
-
H Mao MA Holden M You PS Cremer 2002 Reusable platforms for high-throughput on-chip temperature gradient assays Anal Chem 74 5071 5075
-
(2002)
Anal Chem
, vol.74
, pp. 5071-5075
-
-
Mao, H.1
Holden, M.A.2
You, M.3
Cremer, P.S.4
-
34
-
-
62849084575
-
Microfludic device for creating ionic strength gradients over DNA microarrays for efficient DNA melting studies and assay development
-
J. Petersen, L. Poulsen, H. Birgens, and M. Dufva, (2009) Microfludic device for creating ionic strength gradients over DNA microarrays for efficient DNA melting studies and assay development. PLoS ONE 4 e4808.
-
(2009)
PLoS ONE
, vol.4
-
-
Petersen., J.1
Poulsen., L.2
Birgens., H.3
Dufva., M.4
-
35
-
-
34250683526
-
Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays
-
A.E. Pozhitkov, R.D. Stedtfeld, S.A. Hashsham, and P.A. Noble, (2007) Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays. Nucleic Acids Res.
-
(2007)
Nucleic Acids Res
-
-
Pozhitkov, A.E.1
Stedtfeld, R.D.2
Hashsham, S.A.3
Noble, P.A.4
|