-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh, A.A., Eisen, M.B., Davis, R.E., Ma, C., Lossos, I.S., Rosenwald, A., Boldrick, J.C., Sabet, H., Tran, T., Yu, X., et al. (2000). Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
-
2
-
-
0038206898
-
Clustering-based approaches to discovering and visualizing mciroarray data patterns
-
Azuaje, F. (2003). Clustering-based approaches to discovering and visualizing mciroarray data patterns. Brief. Bioinform. 4, 31-42.
-
(2003)
Brief. Bioinform
, vol.4
, pp. 31-42
-
-
Azuaje, F.1
-
3
-
-
16344369007
-
Clustering of gene expression data using a local shape-based similarity measure
-
Balasubramaniyan, R., Hüllermeier, E., Weskamp, N., and Kämper, J. (2005). Clustering of gene expression data using a local shape-based similarity measure. Bioinformatics 21, 1069-1077.
-
(2005)
Bioinformatics
, vol.21
, pp. 1069-1077
-
-
Balasubramaniyan, R.1
Hüllermeier, E.2
Weskamp, N.3
Kämper, J.4
-
4
-
-
4444283081
-
Fuzzy J-means and VNS methods for clustering genes from microarray data
-
Belacel, N., Čuperlović-Culf, M., Laflamme, M., and Ouellette, R. (2004). Fuzzy J-means and VNS methods for clustering genes from microarray data. Bioinformatics 20, 1690-1701.
-
(2004)
Bioinformatics
, vol.20
, pp. 1690-1701
-
-
Belacel, N.1
Čuperlović-Culf, M.2
Laflamme, M.3
Ouellette, R.4
-
5
-
-
33846606051
-
Clustering methods for microarray gene expression data
-
Belacel, N., Wang, Q., and Cuperlovic-culf, M. (2006). Clustering methods for microarray gene expression data. Omics 10, 507-531.
-
(2006)
Omics
, vol.10
, pp. 507-531
-
-
Belacel, N.1
Wang, Q.2
Cuperlovic-culf, M.3
-
6
-
-
0036359730
-
A stability based method for discovering structure in clustered data
-
Ben-Hur, A., Elisseeff, A., and Guyon, I. (2002). A stability based method for discovering structure in clustered data. Pac. Symp. Biocomput. 7, 6-17.
-
(2002)
Pac. Symp. Biocomput
, vol.7
, pp. 6-17
-
-
Ben-Hur, A.1
Elisseeff, A.2
Guyon, I.3
-
8
-
-
23844434593
-
Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data
-
Boutros, P.C., and Okey, A.B. (2005). Unsupervised pattern recognition: an introduction to the whys and wherefores of clustering microarray data. Brief. Bioinform. 6, 331-343.
-
(2005)
Brief. Bioinform
, vol.6
, pp. 331-343
-
-
Boutros, P.C.1
Okey, A.B.2
-
9
-
-
33645579248
-
Hybrid hierarchical clustering with applications to microarray data
-
Chipman, H. (2006). Hybrid hierarchical clustering with applications to microarray data. Biostatistics 7, 286-301.
-
(2006)
Biostatistics
, vol.7
, pp. 286-301
-
-
Chipman, H.1
-
10
-
-
17944394324
-
Fuzzy C-means for clustering microarray data
-
Dembélé, D., and Kastner, P. (2003). Fuzzy C-means for clustering microarray data. Bioinformatics 19, 973-980.
-
(2003)
Bioinformatics
, vol.19
, pp. 973-980
-
-
Dembélé, D.1
Kastner, P.2
-
11
-
-
33846060705
-
Normalization of microarray data: Single-labeled and dual-labeled arrays
-
Do, J.H., and Choi, D.K. (2006). Normalization of microarray data: single-labeled and dual-labeled arrays. Mol. Cells 22, 254-261.
-
(2006)
Mol. Cells
, vol.22
, pp. 254-261
-
-
Do, J.H.1
Choi, D.K.2
-
12
-
-
0037172724
-
A prediction-based resampling method for estimating the number of clusters in a dataset
-
research0036
-
Dudoit, S., and Fridlyand, J. (2002). A prediction-based resampling method for estimating the number of clusters in a dataset. Genome Biol. 3, research0036.
-
(2002)
Genome Biol
, vol.3
-
-
Dudoit, S.1
Fridlyand, J.2
-
13
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown P.O., and Botstein, D. (1998). Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
14
-
-
84945923591
-
A method for comparing two hierarchical clusterings
-
Fowlkes, E.B., and Mallows, C.L. (1983). A method for comparing two hierarchical clusterings. J. Am. Stat. Assoc. 78, 553-584.
-
(1983)
J. Am. Stat. Assoc
, vol.78
, pp. 553-584
-
-
Fowlkes, E.B.1
Mallows, C.L.2
-
15
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman, N., Linial, M., Nachman, I., and Pe'er, D. (2000). Using Bayesian networks to analyze expression data. J. Comput. Biol. 7, 601-620.
-
(2000)
J. Comput. Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
16
-
-
39449096984
-
FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data
-
Fu, L., and Medico, E. (2007). FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data. BMC Bioinformatics 8, 3.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 3
-
-
Fu, L.1
Medico, E.2
-
17
-
-
0037057374
-
Exploring the conditional co-regulation of yeast gene expression through fuzzy K-means clustering
-
Gasch, A.U., and Eisen, M.B. (2002). Exploring the conditional co-regulation of yeast gene expression through fuzzy K-means clustering. Genome Biol. 3, 1-22.
-
(2002)
Genome Biol
, vol.3
, pp. 1-22
-
-
Gasch, A.U.1
Eisen, M.B.2
-
19
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaassenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., et al. (1999). Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286, 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaassenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
-
20
-
-
34547131280
-
A robust measure of correlation between two genes on a microarray
-
Hardin, J., Mitani, A., Hicks, L., and VanKoten, B. (2007). A robust measure of correlation between two genes on a microarray. BMC Bioinformatics 8, 220.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 220
-
-
Hardin, J.1
Mitani, A.2
Hicks, L.3
VanKoten, B.4
-
21
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed genes
-
Heyer, L.J., Kruglyak, S., and Yooseph, S. (1999). Exploring expression data: identification and analysis of coexpressed genes. Genome Res. 9, 1106-1115.
-
(1999)
Genome Res
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
Kruglyak, S.2
Yooseph, S.3
-
22
-
-
0242475332
-
An unsupervised hierarchical dynamic self-organizing approach to cancer class discovery and marker gene identification in microarray data
-
Hsu, A.L., Tang, S.-L., and Halgamuge, S.K. (2003). An unsupervised hierarchical dynamic self-organizing approach to cancer class discovery and marker gene identification in microarray data. Bioinformatics 19, 2131-2140.
-
(2003)
Bioinformatics
, vol.19
, pp. 2131-2140
-
-
Hsu, A.L.1
Tang, S.-L.2
Halgamuge, S.K.3
-
23
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
Ihmels, J., Friedlander, G., Bergman, S., Sarig, O., Ziv, Y., and Barkai, N. (2002). Revealing modular organization in the yeast transcriptional network. Nat. Genet. 31, 370-377.
-
(2002)
Nat. Genet
, vol.31
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergman, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
24
-
-
33646230770
-
Systematic immunohistochemical profiling of 378 brain tumors with 37 antibodies using tissue microarray technology
-
Ikota, H., Kinjo, S., Yokoo, H., and Nakazato, Y. (2006). Systematic immunohistochemical profiling of 378 brain tumors with 37 antibodies using tissue microarray technology. Acta Neuropathol. (Berl) 111, 475-482.
-
(2006)
Acta Neuropathol. (Berl)
, vol.111
, pp. 475-482
-
-
Ikota, H.1
Kinjo, S.2
Yokoo, H.3
Nakazato, Y.4
-
26
-
-
33846619792
-
Towards interactive exploration of gene expression patterns
-
Jiang, D., Pei, J., and Zhang, A. (2003). Towards interactive exploration of gene expression patterns. ACM SIGKDD Explor Newslett 5, 79-90.
-
(2003)
ACM SIGKDD Explor Newslett
, vol.5
, pp. 79-90
-
-
Jiang, D.1
Pei, J.2
Zhang, A.3
-
28
-
-
33847657554
-
Measuring similarities between gene expression profiles through new data transformation
-
Kim, K., Zhang, S., Jiang, K., Cai, L., Lee, I.-B., Feldman, L.J., and Huang, H. (2007). Measuring similarities between gene expression profiles through new data transformation. BMC Bioinformatics 8, 29.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 29
-
-
Kim, K.1
Zhang, S.2
Jiang, K.3
Cai, L.4
Lee, I.-B.5
Feldman, L.J.6
Huang, H.7
-
29
-
-
0025489075
-
The self-organizing map
-
Kohonen, T. (1990). The self-organizing map. Proc. IEEE 78, 1464-1479.
-
(1990)
Proc. IEEE
, vol.78
, pp. 1464-1479
-
-
Kohonen, T.1
-
31
-
-
2442585545
-
FGKA: A fast genetic K-means clustering algorithm
-
SAC, Nicosia, Cyprus
-
Lu, Y., Lu, S., Fotouhi, F., Deng, Y., and Brown, S.J. (2004a). FGKA: a fast genetic K-means clustering algorithm. Proceedings of the 2004 ACM symposium on Applied computing (SAC), Nicosia, Cyprus.
-
(2004)
Proceedings of the 2004 ACM symposium on Applied computing
-
-
Lu, Y.1
Lu, S.2
Fotouhi, F.3
Deng, Y.4
Brown, S.J.5
-
32
-
-
13244255357
-
Incremental genetic K-means algorithm and its application in gene expression data analysis
-
Lu, Y., Lu, S., Fotouhi, F., Deng, Y., and Brown, S.J. (2004b). Incremental genetic K-means algorithm and its application in gene expression data analysis. BMC Bioinformatics 5, 172.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 172
-
-
Lu, Y.1
Lu, S.2
Fotouhi, F.3
Deng, Y.4
Brown, S.J.5
-
33
-
-
0000415463
-
Dissimilarity analysis: A new technic of hierarchical subdivision
-
Macnaughton-Smith, P., Williams, W.T., Dale, M.B., and Mockett, L.G. (1964). Dissimilarity analysis: a new technic of hierarchical subdivision. Nature 202, 1034-1035.
-
(1964)
Nature
, vol.202
, pp. 1034-1035
-
-
Macnaughton-Smith, P.1
Williams, W.T.2
Dale, M.B.3
Mockett, L.G.4
-
34
-
-
0035342091
-
Basic microarray analysis: Grouping and feature reduction
-
Raychaudhuri, S., Sutphin, P.D., Chang, J.T., and Altman, R.B. (2001). Basic microarray analysis: grouping and feature reduction. Trends Biotechnol. 19, 189-193.
-
(2001)
Trends Biotechnol
, vol.19
, pp. 189-193
-
-
Raychaudhuri, S.1
Sutphin, P.D.2
Chang, J.T.3
Altman, R.B.4
-
35
-
-
0037707302
-
Adaptive double self-organizing maps for clustering gene expression profiles
-
Ressom, H., Wang, D., and Natarajan, P. (2003). Adaptive double self-organizing maps for clustering gene expression profiles. Neural Netw. 16, 633-640.
-
(2003)
Neural Netw
, vol.16
, pp. 633-640
-
-
Ressom, H.1
Wang, D.2
Natarajan, P.3
-
36
-
-
4444367133
-
Biclustering microarray data by Gibbs sampling
-
Sheng, Q., Moreau, Y., and De Moor, B. (2003). Biclustering microarray data by Gibbs sampling. Bioinformatics 19 (Suppl. 2), ii196-ii205.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 2
-
-
Sheng, Q.1
Moreau, Y.2
De Moor, B.3
-
37
-
-
0036899286
-
From patterns to pathways: Gene expression data analysis comes of age
-
Slonim, D.K. (2002). From patterns to pathways: gene expression data analysis comes of age. Nat. Genet. 32 (Suppl. 2), 502-508.
-
(2002)
Nat. Genet
, vol.32
, Issue.SUPPL. 2
, pp. 502-508
-
-
Slonim, D.K.1
-
38
-
-
0035111897
-
A new model of self-organizing neural networks and its application in data projection
-
Su, M., and Chang, H. (2001). A new model of self-organizing neural networks and its application in data projection. IEEE Trans. Neural Netw. 12, 153-158.
-
(2001)
IEEE Trans. Neural Netw
, vol.12
, pp. 153-158
-
-
Su, M.1
Chang, H.2
-
41
-
-
30244517052
-
A new partitioning around medoids algorithm
-
Van der Laan, M., Pollard, K.S., and Bryan, J. (2003). A new partitioning around medoids algorithm. J. Stat. Comput. Simul. 73, 575-584.
-
(2003)
J. Stat. Comput. Simul
, vol.73
, pp. 575-584
-
-
Van der Laan, M.1
Pollard, K.S.2
Bryan, J.3
-
42
-
-
2942601439
-
Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data
-
Wang, J., Bo, T.H., Jonassen, I., and Hovig, E. (2003). Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data. BMC Bioinformatics 4, 60.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 60
-
-
Wang, J.1
Bo, T.H.2
Jonassen, I.3
Hovig, E.4
-
43
-
-
0031915896
-
Large-scale temporal gene expression mapping of central nervous system development
-
Wen, X., Fuhrman, S., Michaels, G.S., Carr, D.B., Smith, S., Barker, J.L., and Somogyi, R. (1998). Large-scale temporal gene expression mapping of central nervous system development. Proc. Natl. Acad. Sci. USA 95, 334-339.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 334-339
-
-
Wen, X.1
Fuhrman, S.2
Michaels, G.S.3
Carr, D.B.4
Smith, S.5
Barker, J.L.6
Somogyi, R.7
-
44
-
-
0034729586
-
A fuzzy logic approach to analyzing gene expression data
-
Woolf, P.J., and Wang, Y. (2000). A fuzzy logic approach to analyzing gene expression data. Physiol. Genomics 3, 9-15.
-
(2000)
Physiol. Genomics
, vol.3
, pp. 9-15
-
-
Woolf, P.J.1
Wang, Y.2
-
45
-
-
33947389255
-
Determination of the minimum number of microarray experiments for discovery of gene expression patterns
-
Wu, F.X., Zhang, W.J., and Kusalik, A.J. (2006). Determination of the minimum number of microarray experiments for discovery of gene expression patterns. BMC Bioinformatics 7 (Suppl. 4), S13.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 4
-
-
Wu, F.X.1
Zhang, W.J.2
Kusalik, A.J.3
-
46
-
-
34648825751
-
A hierarchical clustering method for estimating copy number variation
-
Xing, B., Greenwood, C.M., and Bull, S.B. (2007). A hierarchical clustering method for estimating copy number variation. Biostatistics 8, 632-653.
-
(2007)
Biostatistics
, vol.8
, pp. 632-653
-
-
Xing, B.1
Greenwood, C.M.2
Bull, S.B.3
|