Unlocking the bovine genome

BMC Genomics

Volumn 10, Issue , 2009, Pages 193-

  Tellam, Ross L ^a   Lemay, Danielle G ^b   Van Tassell, Curtis P ^c   Lewin, Harris A ^d   Worley, Kim C ^e   Elsik, Christine G ^f  

^a CSIRO   (Australia)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

^d UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^e BAYLOR COLLEGE OF MEDICINE   (United States)

^f GEORGETOWN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL GENETICS; BOVIDS; BREEDING; CATTLE; GENE MAPPING; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC VARIABILITY; GENOME; GRAZING; HUMAN; INFECTION; INFERTILITY THERAPY; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; NOTE; REPRODUCTION; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; CATTLE; CHROMOSOME MAPPING; CHROMOSOMES, MAMMALIAN; DATABASES, GENETIC; EVOLUTION, MOLECULAR; GENOME; INTERNET; SEQUENCE ANALYSIS, DNA;

BOS; BOS TAURUS; BOVINAE;

EID: 65649102662     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-193     Document Type: Note

References (34)

1. Bovine Genome Sequencing and Analysis Consortium The genome sequence of taurine cattle: A window to ruminant biology and evolution Science 2009, 324:522-528. 10.1126/science.1169588 19390049
2. Bovine HAPMAP Consortium The genetic history of cattle Science 2009, 324:529-532.
3. Bovine genome project http://www.hgsc.bcm.tmc.edu/ project-species-m-Bovine.hgsc?pageLocation=Bovine
4. The Bovine Genome Database http://BovineGenome.org/ bovine_genome_consortium
5. FAO The state of the world's animal genetics resources for food and agriculture http://www.fao.org/docrep/010/a1250e/a1250e00.htm
6. Willham RL From husbandry to science: A highly significant facet of our livestock heritage J Anim Sci 1986, 62:1742-1758.
7. Diamond J Guns, Germs and Steel: The Fates of Human Societies New York: WW Norton & Company 1997.
8. Mason IL World Dictionary of Livestock Breeds Wallingford, UK: CAB International 1998.
9. Tishkoff SA Reed FA Ranciaro A Voight BF Babbitt CC Silverman JS Powell K Mortensen HM Hirbo JB Osman M Ibrahim M Omar SA Lema G Nyambo TB Ghori J Bumpstead S Pritchard JK Wray GA Deloukas P Convergent adaptation of human lactase persistence in Africa and Europe Nature Genetics 2007, 39:31-40. 2672153 17159977 10.1038/ng1946
10. Delority BA Rumen Microbiology Nottingham, UK: Nottingham University Press, UK 2003
11. Hein WR Mackay CR Prominence of gamma delta T cells in the ruminant immune system Immunol Today 1991, 12:30-34. 10.1016/0167-5699(91)90109-7 1826600
12. Renard JP Maruotti J Jouneau A Vignon X Nuclear reprogramming and pluripotency of embryonic cells: Application to the isolation of embryonic stem cells in farm animals Theriogenology 2007, 68:S196-205. 10.1016/j.theriogenology.2007.05.060 17610945
13. Liu Y Qin X Song X Jiang H Shen Y Durbin KJ Lien S Kent MP Sodeland M Ren Y Zhang L Sodergren W Havlak P Worley KC Weinstock GM Gibbs RA Bos taurus genome assembly BMC Genomics 2009, 10:180. 19393050 10.1186/ 1471-2164-10-180
14. MacNeil MD Research contributions from 75 years of breeding Line 1 Hereford cattle at Miles City, Montana J Anim Sci
15. Arias JA Keehan M Fisher P Coppieters W Spelman R A high density linkage map of the bovine genome BMC Genetics 2009, 10:18. 19393043 10.1186/ 1471-2156-10-18
16. Kemkemer C Kohn M Cooper DN Froenicke L Högel J Hameister H Kehrer-Sawatzki H Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution BMC Evolutionary Biology 2009, 9:84. 19393055 10.1186/1471-2148-9-84
17. Lemay DG Lynn DJ Martin WF Neville MC Casey TM Rincon G Kriventseva EV Barris WC Hinrichs AS Molenaar AJ Pollard KS Maqbool NJ Singh K Murney R Zdobnov EM Tellam RL Medrano JF German JB Rijnkels M The bovine lactation genome: Insights into the evolution of mammalian milk Genome Biology 2009, 10:R43. 19393040 10.1186/gb-2009-10-4-r43
18. Molenaar AJ Harris DP Rajan GH Pearson ML Callaghan MR Sommer L Farr VC Oden KE Miles MC Petrova RS Good LL Singh K McLaren RD Prosser CG Kim KS Wieliczko RJ Dines MH Johannessen KM Grigor MR Davis SR Stelwagen K The acute-phase protein serum amyloid A3 is expressed in the bovine mammary gland and plays a role in host defence Biomarkers 2009, 14:26-37. 10.1080/13547500902730714 19283521
19. Walker AM Roberts RM Characterization of the Bovine Type I IFN Locus: Rearrangements, Expansions, and Novel Subfamilies BMC Genomics 2009, 10:187. 19393062 10.1186/1471-2164-10-187
20. Brinkmeyer-Langford C Childers CP Fritz K Gustafson-Seabury A Cothran M Raudsepp T Womack JE Skow LC A high resolution RH map of the bovine major histocompatibility complex BMC Genomics 2009, 10:182. 19393056 10.1186/1471-2164-10-182
21. Connelley T Aerts J Law A Morrison WI Genomic analysis reveals extensive gene duplication within the bovine TRB locus BMC Genomics 2009, 10:192. 19393068 10.1186/1471-2164-10-192
22. Telugu BPVL Walker AM Green JA Characterization of the Pregnancy-Associated Glycoprotein gene family in the bovine genome BMC Genomics 2009, 10:185. 19393060 10.1186/1471-2164-10-185
23. Rodriguez-Osorio N Wang Z Kasinathan P Page GP Robl JM Memili E Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos BMC Genomics 2009, 10:190. 19393066 10.1186/ 1471-2164-10-190
24. Ulzun N Rodriguez-Osorio A Kaya H Wang JJ Parrish VA Ilyin E Memili E Functional Genomics of HMGN3a and SMARCAL1 in Early Mammalian Embryogenesis BMC Genomics 2009, 10:183. 19393058 10.1186/ 1471-2164-10-183
25. Seo S Lewin HA Reconstruction of Metabolic Pathways for the Cattle Genome BMC Systems Biology 2009, 3:33. 2669051 19284618 10.1186/ 1752-0509-3-33
26. Weikard R Goldammer T Eberlein A Kühn C Novel transcripts discovered by mining genomic DNA from defined regions of bovine chromosome 6 BMC Genomics 2009, 10:186. 19393061 10.1186/1471-2164-10-186
27. Villa-Angulo R Matukumalli LK Gill CA Choi J Van Tassell CP Grefenstette JJ High-Resolution Haplotype Block Structure in the Cattle Genome BMC Genetics 2009, 10:19. 19393054 10.1186/1471-2156-10-19
28. MacEachern S McEwan J McCulloch A Mather A Savin K Goddard M Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle? BMC Genomics 2009, 10:179. 19393048 10.1186/1471-2164-10-179
29. MacEachern S McEwan J Goddard M Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae) BMC Genomics 2009, 10:177. 19393045 10.1186/1471-2164-10-177
30. MacEachern S Hayes B McEwan J Goddard M An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle BMC Genomics 2009, 10:181. 19393053 10.1186/ 1471-2164-10-181
31. Barendse W Harrison BE Bunch RJ Thomas BM Turner LB Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits BMC Genomics 2009, 10:178. 19393047 10.1186/1471-2164-10-178
32. Feugang JM Kaya A Page GP Chen L Mehta T Hirani K Nazareth L Topper E Gibbs RA Memili E Two stage genome wide association study identifies Integrin Beta 5 as having a potential role in bull fertility BMC Genomics 2009, 10:176. 19393042 10.1186/1471-2164-10-176
33. Salih H Adelson DL QTL Global Meta-Analysis BMC Genomics 2009, 10:184. 19393059 10.1186/1471-2164-10-184
34. Matukumalli LK Lawley CT Schnabel RD Taylor JF Allan MF Heaton MP O'Connell J Sonstegard TS Smith TPL Moore SS Van Tassell CP Development and characterization of a high density SNP genotyping assay for cattle PLoS ONE. 2669730 19390634