-
1
-
-
77954836158
-
Transcription: from regulatory ncRNA to incongruent redundancy
-
Mellor J. 2010. Transcription: from regulatory ncRNA to incongruent redundancy. Genes Dev 24: 1449-55.
-
(2010)
Genes Dev
, vol.24
, pp. 1449-1455
-
-
Mellor, J.1
-
2
-
-
77957776228
-
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
-
Filion GJ, van Bemmel JG, Braunschweig U, Talhout W, et al. 2010. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell 143: 212-24.
-
(2010)
Cell
, vol.143
, pp. 212-224
-
-
Filion, G.J.1
van Bemmel, J.G.2
Braunschweig, U.3
Talhout, W.4
-
3
-
-
77952996319
-
Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
-
Deal RB, Henikoff JG, Henikoff S. 2010. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328: 1161-4.
-
(2010)
Science
, vol.328
, pp. 1161-1164
-
-
Deal, R.B.1
Henikoff, J.G.2
Henikoff, S.3
-
4
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, Gough J, et al. 2005. The transcriptional landscape of the mammalian genome. Science 309: 1559-63.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
-
5
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
David L, Huber W, Granovskaia M, Toedling J, et al. 2006. A high-resolution map of transcription in the yeast genome. Proc Natl Acad Sci USA 103: 5320-5.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
-
6
-
-
57849105533
-
The antisense transcriptomes of human cells
-
He Y, Vogelstein B, Velculescu VE, Papadopoulos N, et al. 2008. The antisense transcriptomes of human cells. Science 322: 1855-7.
-
(2008)
Science
, vol.322
, pp. 1855-1857
-
-
He, Y.1
Vogelstein, B.2
Velculescu, V.E.3
Papadopoulos, N.4
-
7
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P, Cheng J, Dike S, Nix DA, et al. 2007. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316: 1484-8.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
-
8
-
-
29444438757
-
Genome-wide transcription analyses in rice using tiling microarrays
-
Li L, Wang X, Stolc V, Li X, et al. 2006. Genome-wide transcription analyses in rice using tiling microarrays. Nat Genet 38: 124-9.
-
(2006)
Nat Genet
, vol.38
, pp. 124-129
-
-
Li, L.1
Wang, X.2
Stolc, V.3
Li, X.4
-
9
-
-
7444233156
-
A gene expression map for the euchromatic genome of Drosophila melanogaster
-
Stolc V, Gauhar Z, Mason C, Halasz G, et al. 2004. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science 306: 655-60.
-
(2004)
Science
, vol.306
, pp. 655-660
-
-
Stolc, V.1
Gauhar, Z.2
Mason, C.3
Halasz, G.4
-
10
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z, Wei W, Gagneur J, Perocchi F, et al. 2009. Bidirectional promoters generate pervasive transcription in yeast. Nature 457: 1033-7.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
-
11
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, et al. 2007. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744-7.
-
(2007)
Science
, vol.316
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
-
12
-
-
37349043972
-
Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends
-
Azzalin CM, Reichenbach P, Khoriauli L, Giulotto E, et al. 2007. Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science 318: 798-801.
-
(2007)
Science
, vol.318
, pp. 798-801
-
-
Azzalin, C.M.1
Reichenbach, P.2
Khoriauli, L.3
Giulotto, E.4
-
13
-
-
33947273235
-
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
-
Brennecke J, Aravin AA, Stark A, Dus M, et al. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-103.
-
(2007)
Cell
, vol.128
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
-
14
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza MJ, Li B, Florens L, Suganuma T, et al. 2005. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123: 581-92.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
-
15
-
-
69949159297
-
Pervasive transcription constitutes a new level of eukaryotic genome regulation
-
Berretta J, Morillon A. 2009. Pervasive transcription constitutes a new level of eukaryotic genome regulation. EMBO Rep 10: 973-82.
-
(2009)
EMBO Rep
, vol.10
, pp. 973-982
-
-
Berretta, J.1
Morillon, A.2
-
16
-
-
78651481549
-
Transcribed dark matter: meaning or myth
-
Ponting CP, Belgard TG. 2010. Transcribed dark matter: meaning or myth? Hum Mol Genet 19: R162-8.
-
(2010)
Hum Mol Genet
, vol.19
-
-
Ponting, C.P.1
Belgard, T.G.2
-
17
-
-
33846984935
-
Transcriptional noise and the fidelity of initiation by RNA polymerase II
-
Struhl K. 2007. Transcriptional noise and the fidelity of initiation by RNA polymerase II. Nat Struct Mol Biol 14: 103-5.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 103-105
-
-
Struhl, K.1
-
18
-
-
66049083160
-
X inactivation and the complexities of silencing a sex chromosome
-
Chow J, Heard E. 2009. X inactivation and the complexities of silencing a sex chromosome. Curr Opin Cell Biol 21: 359-66.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 359-366
-
-
Chow, J.1
Heard, E.2
-
19
-
-
56549111129
-
The Air non-coding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, Pauler FM, et al. 2008. The Air non-coding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322: 1717-20.
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
-
20
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, et al. 2007. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129: 1311-23.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
-
21
-
-
79851485916
-
Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level
-
Rach EA, Winter DR, Benjamin AM, Corcoran DL, et al. 2011. Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level. PLoS Genet 7: e1001274.
-
(2011)
PLoS Genet
, vol.7
-
-
Rach, E.A.1
Winter, D.R.2
Benjamin, A.M.3
Corcoran, D.L.4
-
22
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-8.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
23
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil H, Malabat C, d'Aubenton-Carafa Y, Xu Z, et al. 2009. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457: 1038-42.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
d'Aubenton-Carafa, Y.3
Xu, Z.4
-
24
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, et al. 2008. Divergent transcription from active promoters. Science 322: 1849-51.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
-
25
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P, Nielsen J, Kammler S, Lykke-Andersen S, et al. 2008. RNA exosome depletion reveals transcription upstream of active human promoters. Science 322: 1851-4.
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
Lykke-Andersen, S.4
-
26
-
-
84855783762
-
Ubiquitous antisense transcription in eukaryotes: novel regulatory mechanism or byproduct of opportunistic RNA polymerase
-
Layer JH, Weil PA. 2009. Ubiquitous antisense transcription in eukaryotes: novel regulatory mechanism or byproduct of opportunistic RNA polymerase? F1000 Biol Rep 1: 33.
-
(2009)
F1000 Biol Rep
, vol.1
, pp. 33
-
-
Layer, J.H.1
Weil, P.A.2
-
27
-
-
70249104647
-
Defining mechanisms that regulate RNA polymerase II transcription in vivo
-
Fuda NJ, Ardehali MB, Lis JT. 2009. Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature 461: 186-92.
-
(2009)
Nature
, vol.461
, pp. 186-192
-
-
Fuda, N.J.1
Ardehali, M.B.2
Lis, J.T.3
-
28
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min IM, Waterfall JJ, Core LJ, Munroe RJ, et al. 2011. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev 25: 742-54.
-
(2011)
Genes Dev
, vol.25
, pp. 742-754
-
-
Min, I.M.1
Waterfall, J.J.2
Core, L.J.3
Munroe, R.J.4
-
29
-
-
0026607331
-
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex
-
Bell SP, Stillman B. 1992. ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature 357: 128-34.
-
(1992)
Nature
, vol.357
, pp. 128-134
-
-
Bell, S.P.1
Stillman, B.2
-
30
-
-
0027894191
-
Analysis of replication origin function on chromosome III of Saccharomyces cerevisiae
-
Newlon CS, Collins I, Dershowitz A, Deshpande AM, et al. 1993. Analysis of replication origin function on chromosome III of Saccharomyces cerevisiae. Cold Spring Harb Symp Quant Biol 58: 415-23.
-
(1993)
Cold Spring Harb Symp Quant Biol
, vol.58
, pp. 415-423
-
-
Newlon, C.S.1
Collins, I.2
Dershowitz, A.3
Deshpande, A.M.4
-
31
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication
-
Feng W, Collingwood D, Boeck ME, Fox LA, et al. 2006. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat Cell Biol 8: 148-55.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
-
32
-
-
34547236841
-
Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae
-
Xu W, Aparicio JG, Aparicio OM, Tavare S. 2006. Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7: 276.
-
(2006)
BMC Genomics
, vol.7
, pp. 276
-
-
Xu, W.1
Aparicio, J.G.2
Aparicio, O.M.3
Tavare, S.4
-
33
-
-
0028080885
-
Functional conservation of multiple elements in yeast chromosomal replicators
-
Rao H, Marahrens Y, Stillman B. 1994. Functional conservation of multiple elements in yeast chromosomal replicators. Mol Cell Biol 14: 7643-51.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 7643-7651
-
-
Rao, H.1
Marahrens, Y.2
Stillman, B.3
-
34
-
-
77649320197
-
Structural diversity and dynamics of genomic replication origins in Schizosaccharomyces pombe
-
Cotobal C, Segurado M, Antequera F. 2010. Structural diversity and dynamics of genomic replication origins in Schizosaccharomyces pombe. Embo J 29: 934-42.
-
(2010)
Embo J
, vol.29
, pp. 934-942
-
-
Cotobal, C.1
Segurado, M.2
Antequera, F.3
-
35
-
-
33947110984
-
Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast
-
Hayashi M, Katou Y, Itoh T, Tazumi A, et al. 2007. Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast. Embo J 26: 1327-39.
-
(2007)
Embo J
, vol.26
, pp. 1327-1339
-
-
Hayashi, M.1
Katou, Y.2
Itoh, T.3
Tazumi, A.4
-
36
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger C, Penkett CJ, Bahler J, Nurse P. 2006. Genome-wide characterization of fission yeast DNA replication origins. Embo J 25: 5171-9.
-
(2006)
Embo J
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.J.2
Bahler, J.3
Nurse, P.4
-
37
-
-
0346873031
-
Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe
-
Segurado M, de Luis A, Antequera F. 2003. Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep 4: 1048-53.
-
(2003)
EMBO Rep
, vol.4
, pp. 1048-1053
-
-
Segurado, M.1
de Luis, A.2
Antequera, F.3
-
38
-
-
0033055057
-
The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks
-
Chuang RY, Kelly TJ. 1999. The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks. Proc Natl Acad Sci USA 96: 2656-61.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2656-2661
-
-
Chuang, R.Y.1
Kelly, T.J.2
-
39
-
-
0035104474
-
Nucleosomes positioned by ORC facilitate the initiation of DNA replication
-
Lipford JR, Bell SP. 2001. Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Mol Cell 7: 21-30.
-
(2001)
Mol Cell
, vol.7
, pp. 21-30
-
-
Lipford, J.R.1
Bell, S.P.2
-
40
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton ML, Galani K, Kang S, Bell SP, et al. 2010. Conserved nucleosome positioning defines replication origins. Genes Dev 24: 748-53.
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
-
41
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, et al. 2008. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4: e1000216.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
-
42
-
-
76349103252
-
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
-
Lantermann AB, Straub T, Stralfors A, Yuan GC, et al. 2010. Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nat Struct Mol Biol 17: 251-7.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 251-257
-
-
Lantermann, A.B.1
Straub, T.2
Stralfors, A.3
Yuan, G.C.4
-
43
-
-
75649109712
-
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
-
MacAlpine HK, Gordan R, Powell SK, Hartemink AJ, et al. 2010. Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading. Genome Res 20: 201-11.
-
(2010)
Genome Res
, vol.20
, pp. 201-211
-
-
MacAlpine, H.K.1
Gordan, R.2
Powell, S.K.3
Hartemink, A.J.4
-
44
-
-
79952359976
-
Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks
-
Costas C, de la Paz Sanchez M, Stroud H, Yu Y, et al. 2010. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat Struct Mol Biol 18: 395-400.
-
(2010)
Nat Struct Mol Biol
, vol.18
, pp. 395-400
-
-
Costas, C.1
de la Paz Sanchez, M.2
Stroud, H.3
Yu, Y.4
-
45
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine DM, Rodriguez HK, Bell SP. 2004. Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18: 3094-105.
-
(2004)
Genes Dev
, vol.18
, pp. 3094-3105
-
-
MacAlpine, D.M.1
Rodriguez, H.K.2
Bell, S.P.3
-
46
-
-
1842509904
-
DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding
-
Remus D, Beall EL, Botchan MR. 2004. DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding. Embo J 23: 897-907.
-
(2004)
Embo J
, vol.23
, pp. 897-907
-
-
Remus, D.1
Beall, E.L.2
Botchan, M.R.3
-
47
-
-
0842307053
-
An episomal mammalian replicon: sequence-independent binding of the origin recognition complex
-
Schaarschmidt D, Baltin J, Stehle IM, Lipps HJ, et al. 2004. An episomal mammalian replicon: sequence-independent binding of the origin recognition complex. Embo J 23: 191-201.
-
(2004)
Embo J
, vol.23
, pp. 191-201
-
-
Schaarschmidt, D.1
Baltin, J.2
Stehle, I.M.3
Lipps, H.J.4
-
48
-
-
0042125189
-
Sequence-independent DNA binding and replication initiation by the human origin recognition complex
-
Vashee S, Cvetic C, Lu W, Simancek P, et al. 2003. Sequence-independent DNA binding and replication initiation by the human origin recognition complex. Genes Dev 17: 1894-908.
-
(2003)
Genes Dev
, vol.17
, pp. 1894-1908
-
-
Vashee, S.1
Cvetic, C.2
Lu, W.3
Simancek, P.4
-
49
-
-
0036842221
-
Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing
-
Schubeler D, Scalzo D, Kooperberg C, van Steensel B, et al. 2002. Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet 32: 438-42.
-
(2002)
Nat Genet
, vol.32
, pp. 438-442
-
-
Schubeler, D.1
Scalzo, D.2
Kooperberg, C.3
van Steensel, B.4
-
50
-
-
61849177618
-
Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome
-
Schwaiger M, Stadler MB, Bell O, Kohler H, et al. 2009. Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome. Genes Dev 23: 589-601.
-
(2009)
Genes Dev
, vol.23
, pp. 589-601
-
-
Schwaiger, M.1
Stadler, M.B.2
Bell, O.3
Kohler, H.4
-
51
-
-
53549118586
-
Global organization of replication time zones of the mouse genome
-
Farkash-Amar S, Lipson D, Polten A, Goren A, et al. 2008. Global organization of replication time zones of the mouse genome. Genome Res 18: 1562-70.
-
(2008)
Genome Res
, vol.18
, pp. 1562-1570
-
-
Farkash-Amar, S.1
Lipson, D.2
Polten, A.3
Goren, A.4
-
52
-
-
75649092667
-
Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
-
Hiratani I, Ryba T, Itoh M, Rathjen J, et al. 2010. Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis. Genome Res 20: 155-69.
-
(2010)
Genome Res
, vol.20
, pp. 155-169
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
Rathjen, J.4
-
53
-
-
54949085778
-
Global reorganization of replication domains during embryonic stem cell differentiation
-
Hiratani I, Ryba T, Itoh M, Yokochi T, et al. 2008. Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biol 6: e245.
-
(2008)
PLoS Biol
, vol.6
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
Yokochi, T.4
-
54
-
-
77954155284
-
Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state
-
Lee TJ, Pascuzzi PE, Settlage SB, Shultz RW, et al. 2010. Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genet 6: e1000982.
-
(2010)
PLoS Genet
, vol.6
-
-
Lee, T.J.1
Pascuzzi, P.E.2
Settlage, S.B.3
Shultz, R.W.4
-
55
-
-
77952994784
-
Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
-
Ryba T, Hiratani I, Lu J, Itoh M, et al. 2010. Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res 20: 761-70.
-
(2010)
Genome Res
, vol.20
, pp. 761-770
-
-
Ryba, T.1
Hiratani, I.2
Lu, J.3
Itoh, M.4
-
56
-
-
57349149434
-
Genome-wide studies highlight indirect links between human replication origins and gene regulation
-
Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, et al. 2008. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc Natl Acad Sci USA 105: 15837-42.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15837-15842
-
-
Cadoret, J.C.1
Meisch, F.2
Hassan-Zadeh, V.3
Luyten, I.4
-
57
-
-
80052523848
-
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
-
Cayrou C, Coulombe P, Vigneron A, Stanojcic S, et al. 2011. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res 21: 1438-49.
-
(2011)
Genome Res
, vol.21
, pp. 1438-1449
-
-
Cayrou, C.1
Coulombe, P.2
Vigneron, A.3
Stanojcic, S.4
-
58
-
-
76049105950
-
Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection
-
Karnani N, Taylor CM, Malhotra A, Dutta A. 2010. Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection. Mol Biol Cell 21: 393-404.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 393-404
-
-
Karnani, N.1
Taylor, C.M.2
Malhotra, A.3
Dutta, A.4
-
59
-
-
66149138883
-
Transcription initiation activity sets replication origin efficiency in mammalian cells
-
Sequeira-Mendes J, Diaz-Uriarte R, Apedaile A, Huntley D, et al. 2009. Transcription initiation activity sets replication origin efficiency in mammalian cells. PLoS Genet 5: e1000446.
-
(2009)
PLoS Genet
, vol.5
-
-
Sequeira-Mendes, J.1
Diaz-Uriarte, R.2
Apedaile, A.3
Huntley, D.4
-
60
-
-
79955940233
-
Preferential localization of human origins of DNA replication at the 5'-ends of expressed genes and at evolutionarily conserved DNA sequences
-
Valenzuela MS, Chen Y, Davis S, Yang F, et al. 2011. Preferential localization of human origins of DNA replication at the 5'-ends of expressed genes and at evolutionarily conserved DNA sequences. PLoS One 6: e17308.
-
(2011)
PLoS One
, vol.6
-
-
Valenzuela, M.S.1
Chen, Y.2
Davis, S.3
Yang, F.4
-
61
-
-
79952270733
-
Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
-
Mesner LD, Valsakumar V, Karnani N, Dutta A, et al. 2011. Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription. Genome Res 21: 377-89.
-
(2011)
Genome Res
, vol.21
, pp. 377-389
-
-
Mesner, L.D.1
Valsakumar, V.2
Karnani, N.3
Dutta, A.4
-
62
-
-
27944452746
-
Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development
-
Norio P, Kosiyatrakul S, Yang Q, Guan Z, et al. 2005. Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development. Mol Cell 20: 575-87.
-
(2005)
Mol Cell
, vol.20
, pp. 575-587
-
-
Norio, P.1
Kosiyatrakul, S.2
Yang, Q.3
Guan, Z.4
-
63
-
-
0042743766
-
Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and inter-origin spacing
-
Anglana M, Apiou F, Bensimon A, Debatisse M. 2003. Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and inter-origin spacing. Cell 114: 385-94.
-
(2003)
Cell
, vol.114
, pp. 385-394
-
-
Anglana, M.1
Apiou, F.2
Bensimon, A.3
Debatisse, M.4
-
64
-
-
52949092763
-
Replication fork movement sets chromatin loop size and origin choice in mammalian cells
-
Courbet S, Gay S, Arnoult N, Wronka G, et al. 2008. Replication fork movement sets chromatin loop size and origin choice in mammalian cells. Nature 455: 557-60.
-
(2008)
Nature
, vol.455
, pp. 557-560
-
-
Courbet, S.1
Gay, S.2
Arnoult, N.3
Wronka, G.4
-
65
-
-
45749125566
-
Controlled re-replication at DNA replication origins
-
Gomez M. 2008. Controlled re-replication at DNA replication origins. Cell Cycle 7: 1313-4.
-
(2008)
Cell Cycle
, vol.7
, pp. 1313-1314
-
-
Gomez, M.1
-
66
-
-
38949184969
-
Overreplication of short DNA regions during S phase in human cells
-
Gomez M, Antequera F. 2008. Overreplication of short DNA regions during S phase in human cells. Genes Dev 22: 375-85.
-
(2008)
Genes Dev
, vol.22
, pp. 375-385
-
-
Gomez, M.1
Antequera, F.2
-
67
-
-
79955642432
-
Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone
-
Lubelsky Y, Sasaki T, Kuipers MA, Lucas I, et al. 2011. Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone. Nucleic Acids Res 39: 3141-55.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3141-3155
-
-
Lubelsky, Y.1
Sasaki, T.2
Kuipers, M.A.3
Lucas, I.4
-
68
-
-
4444384150
-
The replicon revisited: an old model learns new tricks in metazoan chromosomes
-
Aladjem MI, Fanning E. 2004. The replicon revisited: an old model learns new tricks in metazoan chromosomes. EMBO Rep 5: 686-91.
-
(2004)
EMBO Rep
, vol.5
, pp. 686-691
-
-
Aladjem, M.I.1
Fanning, E.2
-
69
-
-
79959557189
-
Determinants of nucleosome organization in primary human cells
-
Valouev A, Johnson SM, Boyd SD, Smith CL, et al. 2011. Determinants of nucleosome organization in primary human cells. Nature 474: 516-20.
-
(2011)
Nature
, vol.474
, pp. 516-520
-
-
Valouev, A.1
Johnson, S.M.2
Boyd, S.D.3
Smith, C.L.4
-
70
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E, Fondufe-Mittendorf Y, Chen L, Thastrom A, et al. 2006. A genomic code for nucleosome positioning. Nature 442: 772-8.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
-
71
-
-
68149150830
-
H3.3/H2A.Z. double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin C, Zang C, Wei G, Cui K, et al. 2009. H3.3/H2A.Z. double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-5.
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
-
72
-
-
78049415820
-
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure
-
pii
-
Berbenetz NM, Nislow C, Brown GW. 2010. Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure. PLoS Genet 6: pii: e1001092.
-
(2010)
PLoS Genet
, vol.6
-
-
Berbenetz, N.M.1
Nislow, C.2
Brown, G.W.3
-
73
-
-
77954526472
-
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin
-
Muller P, Park S, Shor E, Huebert DJ, et al. 2010. The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin. Genes Dev 24: 1418-33.
-
(2010)
Genes Dev
, vol.24
, pp. 1418-1433
-
-
Muller, P.1
Park, S.2
Shor, E.3
Huebert, D.J.4
-
74
-
-
33751087739
-
The BAH domain facilitates the ability of human Orc1 protein to activate replication origins in vivo
-
Noguchi K, Vassilev A, Ghosh S, Yates JL, et al. 2006. The BAH domain facilitates the ability of human Orc1 protein to activate replication origins in vivo. Embo J 25: 5372-82.
-
(2006)
Embo J
, vol.25
, pp. 5372-5382
-
-
Noguchi, K.1
Vassilev, A.2
Ghosh, S.3
Yates, J.L.4
-
75
-
-
73649089696
-
HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin
-
Miotto B, Struhl K. 2010. HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin. Mol Cell 37: 57-66.
-
(2010)
Mol Cell
, vol.37
, pp. 57-66
-
-
Miotto, B.1
Struhl, K.2
-
76
-
-
78149281634
-
The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells
-
Tardat M, Brustel J, Kirsh O, Lefevbre C, et al. 2010. The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells. Nat Cell Biol 12: 1086-93.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 1086-1093
-
-
Tardat, M.1
Brustel, J.2
Kirsh, O.3
Lefevbre, C.4
-
77
-
-
80655125024
-
The chromatin remodeler sucrose nonfermenting 2 homolog (SNF2H) is recruited onto DNA replication origins through interaction with CDC10-dependent transcript 1 (CDT1) and promotes the pre-replication complex formation
-
print, DOI: 10.1074/jbc.M111.256123.
-
Sugimoto N, Yugawa T, Iizuka M, Kiyono T, et al. 2011. The chromatin remodeler sucrose nonfermenting 2 homolog (SNF2H) is recruited onto DNA replication origins through interaction with CDC10-dependent transcript 1 (CDT1) and promotes the pre-replication complex formation. J Biol Chem, in print, DOI: 10.1074/jbc.M111.256123.
-
(2011)
J Biol Chem
-
-
Sugimoto, N.1
Yugawa, T.2
Iizuka, M.3
Kiyono, T.4
-
78
-
-
77956879643
-
Evaluating genome-scale approaches to eukaryotic DNA replication
-
Gilbert DM. 2010. Evaluating genome-scale approaches to eukaryotic DNA replication. Nat Rev Genet 11: 673-84.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 673-684
-
-
Gilbert, D.M.1
-
79
-
-
77957168933
-
Eukaryotic DNA replication origins: many choices for appropriate answers
-
Mechali M. 2010. Eukaryotic DNA replication origins: many choices for appropriate answers. Nat Rev Mol Cell Biol 11: 728-38.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 728-738
-
-
Mechali, M.1
-
80
-
-
10044243604
-
Genomic specification and epigenetic regulation of eukaryotic DNA replication origins
-
Antequera F. 2004. Genomic specification and epigenetic regulation of eukaryotic DNA replication origins. Embo J 23: 4365-70.
-
(2004)
Embo J
, vol.23
, pp. 4365-4370
-
-
Antequera, F.1
-
81
-
-
0028829358
-
Transition in specification of embryonic metazoan DNA replication origins
-
Hyrien O, Maric C, Mechali M. 1995. Transition in specification of embryonic metazoan DNA replication origins. Science 270: 994-7.
-
(1995)
Science
, vol.270
, pp. 994-997
-
-
Hyrien, O.1
Maric, C.2
Mechali, M.3
-
82
-
-
79960196941
-
The many faces of redundancy in DNA replication control
-
Diffley JF. 2010. The many faces of redundancy in DNA replication control. Cold Spring Harb Symp Quant Biol 75: 135-42.
-
(2010)
Cold Spring Harb Symp Quant Biol
, vol.75
, pp. 135-142
-
-
Diffley, J.F.1
-
83
-
-
79551661935
-
Cell-typespecific replication initiation programs set fragility of the FRA3B fragile site
-
Letessier A, Millot GA, Koundrioukoff S, Lachages AM, et al. 2011. Cell-typespecific replication initiation programs set fragility of the FRA3B fragile site. Nature 470: 120-3.
-
(2011)
Nature
, vol.470
, pp. 120-123
-
-
Letessier, A.1
Millot, G.A.2
Koundrioukoff, S.3
Lachages, A.M.4
-
84
-
-
79959885574
-
Failure of origin activation in response to fork stalling leads to chromosomal instability at fragile sites
-
Ozeri-Galai E, Lebofsky R, Rahat A, Bester AC, et al. 2011. Failure of origin activation in response to fork stalling leads to chromosomal instability at fragile sites. Mol Cell 43: 122-31.
-
(2011)
Mol Cell
, vol.43
, pp. 122-131
-
-
Ozeri-Galai, E.1
Lebofsky, R.2
Rahat, A.3
Bester, A.C.4
|