Erratum: Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast (The EMBO Journal (2007) 26 (1327-1339) DOI: 10.1038/sj.emboj.7601585);Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

EMBO Journal

Volumn 26, Issue 5, 2007, Pages 1327-1339

  Hayashi, Makoto ^a   Katou, Yuki ^b   Itoh, Takehiko ^c   Tazumi, Mitsutoshi ^a   Yamada, Yoshiki ^a,e   Takahashi, Tatsuro ^a,f   Nakagawa, Takuro ^a   Shirahige, Katsuhiko ^b,d   Masukata, Hisao ^a  

^a OSAKA UNIVERSITY   (Japan)

^b RIKEN YOKOHAMA INSTITUTE   (Japan)

^c MITSUBISHI RESEARCH INSTITUTE   (Japan)

^d TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^e SCRIPPS RESEARCH INSTITUTE   (United States)

^f HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Centromere; DNA microarray; Fission yeast; Replication origin; Subtelomere

Indexed keywords

BROXURIDINE; CHECKPOINT KINASE 2; HYDROXYUREA; MCM6 PROTEIN; NUCLEIC ACID BINDING PROTEIN; ORC1 PROTEIN; ORIGIN RECOGNITION COMPLEX; PROTEIN; SPACER DNA; UNCLASSIFIED DRUG;

ARTICLE; CHROMOSOME HIGH RESOLUTION BANDING ANALYSIS; CONTROLLED STUDY; DNA REPLICATION; GENE; GENE DELETION; GENE IDENTIFICATION; GENE INACTIVATION; GENE LOCATION; GENE LOCUS; GENE MAPPING; GENE REPLICATION; GENOME; HETEROCHROMATIN; MATING TYPE; NONHUMAN; PRIORITY JOURNAL; SCHIZOSACCHAROMYCES POMBE; YEAST;

EUKARYOTA; SCHIZOSACCHAROMYCES POMBE; SCHIZOSACCHAROMYCETACEAE;

EID: 33947110984     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/sj.emboj.7601708     Document Type: Erratum

References (52)

1. Aparicio JG, Viggiani CJ, Gibson DG, Aparicio OM (2004) The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae. Mol Cell Biol 24: 4769-4780
2. Arcangioli B (1998) A site- and strand-specific DNA break confers asymmetric switching potential in fission yeast. EMBO J 17: 4503-4510
3. Bell SP, Dutta A (2002) DNA replication in eukaryotic cells. Annu Rev Biochem 71: 333-374
4. Bickmore WA, Carothers AD (1995) Factors affecting the timing and imprinting of replication on a mammalian chromosome. J Cell Sci 108: 2801-2809
5. Brewer BJ, Fangman WL (1987) The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51: 463-471
6. Cam HP, Sugiyama T, Chen ES, Chen X, FitzGerald PC, Grewal SI (2005) Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome. Nat Genet 37: 809-819
7. Chang YC (2000) Residuals analysis of the generalized linear models for longitudinal data. Stat Med 19: 1277-1293
8. Chuang RY, Kelly TJ (1999) The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks. Proc Natl Acad Sci USA 96: 2656-2661
9. Clyne RK, Kelly TJ (1995) Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe. EMBO J 14: 6348-6357
10. Dai J, Chuang RY, Kelly TJ (2005) DNA replication origins in the Schizosaccharomyces pombe genome. Proc Natl Acad Sci USA 102: 337-342
11. Diffley JF, Cocker JH, Dowell SJ, Rowley A (1994) Two steps in the assembly of complexes at yeast replication origins in vivo. Cell 78: 303-316
12. Dubey DD, Kim SM, Todorov IT, Huberman JA (1996) Large, complex modular structure of a fission yeast DNA replication origin. Curr Biol 6: 467-473
13. Dubey DD, Zhu J, Carlson DL, Sharma K, Huberman JA (1994) Three ARS elements contribute to the ura4 replication origin region in the fission yeast, Schizosaccharomyces pombe. EMBO J 13: 3638-3647
14. Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, Raghuraman MK, Brewer BJ (2006) Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat Cell Biol 8: 148-155
15. Gilbert DM (2001) Making sense of eukaryotic DNA replication origins. Science 294: 96-100
16. Gomez M, Antequera F (1999) Organization of DNA replication origins in the fission yeast genome. EMBO J 18: 5683-5690
17. Guenatri M, Bailly D, Maison C, Almouzni G (2004) Mouse centric and pericentric satellite repeats form distinct functional heterochromatin. J Cell Biol 166: 493-505
18. Heichinger C, Penkett CJ, Bahler J, Nurse P (2006) Genome-wide characterization of fission yeast DNA replication origins. EMBO J 25: 5171-5179
19. Hollo G, Kereso J, Praznovszky T, Cserpan I, Fodor K, Katona R, Csonka E, Fatyol K, Szeles A, Szalay AA, Hadlaczky G (1996) Evidence for a megareplicon covering megabases of centromeric chromosome segments. Chromosome Res 4: 240-247
20. Jeon Y, Bekiranov S, Karnani N, Kapranov P, Ghosh S, MacAlpine D, Lee C, Hwang DS, Gingeras TR, Dutta A (2005) Temporal profile of replication of human chromosomes. Proc Natl Acad Sci USA 102: 6419-6424
21. Kanoh J, Sadaie M, Urano T, Ishikawa F (2005) Telomere binding protein Taz1 establishes Swi6 heterochromatin independently of RNAi at telomeres. Curr Biol 15: 1808-1819
22. Katou Y, Kanoh Y, Bando M, Noguchi H, Tanaka H, Ashikari T, Sugimoto K, Shirahige K (2003) S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex. Nature 424: 1078-1083
23. Kearsey SE, Cotterill S (2003) Enigmatic variations: divergent modes of regulating eukaryotic DNA replication. Mol Cell 12: 1067-1075
24. Kim SM, Dubey DD, Huberman JA (2003) Early-replicating heterochromatin. Genes Dev 17: 330-335
25. MacAlpine DM, Bell SP (2005) A genomic view of eukaryotic DNA replication. Chromosome Res 13: 309-326
26. MacAlpine DM, Rodriguez HK, Bell SP (2004) Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18: 3094-3105
27. Maundrell K (1993) Thiamine-repressible expression vectors pREP and pRIP for fission yeast. Gene 123: 127-130
28. Miller KM, Rog O, Cooper JP (2006) Semi-conservative DNA replication through telomeres requires Taz1. Nature 440: 824-828
29. Ogawa Y, Takahashi T, Masukata H (1999) Association of fission yeast Orp1 and Mcm6 proteins with chromosomal replication origins. Mol Cell Biol 19: 7228-7236
30. Okuno Y, Okazaki T, Masukata H (1997) Identification of a predominant replication origin in fission yeast. Nucleic Acids Res 25: 530-537
31. Okuno Y, Satoh H, Sekiguchi M, Masukata H (1999) Clustered adenine/thymine stretches are essential for function of a fission yeast replication origin. Mol Cell Biol 19: 6699-6709
32. Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N (2006) DNA replication origins fire stochastically in fission yeast. Mol Biol Cell 17: 308-316
33. Pidoux AL, Allshire RC (2004) Kinetochore and heterochromatin domains of the fission yeast centromere. Chromosome Res 12: 521-534
34. Prasanth SG, Prasanth KV, Siddiqui K, Spector DL, Stillman B (2004) Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance. EMBO J 23: 2651-2663
35. Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL (2001) Replication dynamics of the yeast genome. Science 294: 115-121
36. Remus D, Beall EL, Botchan MR (2004) DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding. EMBO J 23: 897-907
37. Sanchez JA, Kim SM, Huberman JA (1998) Ribosomal DNA replication in the fission yeast, Schizosaccharomyces pombe. Exp Cell Res 238: 220-230
38. Santocanale C, Diffley JF (1998) A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication. Nature 395: 615-618
39. Schubeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, Groudine M (2002) Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet 32: 438-442
40. Schwaiger M, Schubeler D (2006) A question of timing: emerging links between transcription and replication. Curr Opin Genet Dev 16: 177-183
41. Segurado M, de Luis A, Antequera F (2003) Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep 4: 1048-1053
42. Segurado M, Gomez M, Antequera F (2002) Increased recombination intermediates and homologous integration hot spots at DNA replication origins. Mol Cell 10: 907-916
43. Smith JG, Caddle MS, Bulboaca GH, Wohlgemuth JG, Baum M, Clarke L, Calos MP (1995) Replication of centromere II of Schizosaccharomyces pombe. Mol Cell Biol 15: 5165-5172
44. Stevenson JB, Gottschling DE (1999) Telomeric chromatin modulates replication timing near chromosome ends. Genes Dev 13: 146-151
45. Takahashi K, Murakami S, Chikashige Y, Funabiki H, Niwa O, Yanagida M (1992) A low copy number central sequence with strict symmetry and unusual chromatin structure in fission yeast centromere. Mol Biol Cell 3: 819-835
46. Takahashi T, Ohara E, Nishitani H, Masukata H (2003) Multiple ORC-binding sites are required for efficient MCM loading and origin firing in fission yeast. EMBO J 22: 964-974
47. Takebayashi S, Sugimura K, Saito T, Sato C, Fukushima Y, Taguchi H, Okumura K (2005) Regulation of replication at the R/G chromosomal band boundary and pericentromeric heterochromatin of mammalian cells. Exp Cell Res 304: 162-174
48. Vashee S, Cvetic C, Lu W, Simancek P, Kelly TJ, Walter JC (2003) Sequence-independent DNA binding and replication initiation by the human origin recognition complex. Genes Dev 17: 1894-1908
49. Wohlgemuth JG, Bulboaca GH, Moghadam M, Caddle MS, Calos MP (1994) Physical mapping of origins of replication in the fission yeast Schizosaccharomyces pombe. Mol Biol Cell 5: 839-849
50. Woodfine K, Fiegler H, Beare DM, Collins JE, McCann OT, Young BD, Debernardi S, Mott R, Dunham I, Carter NP (2004) Replication timing of the human genome. Hum Mol Genet 13: 191-202
51. Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294: 2357-2360
52. Wyrick JJ, Holstege FC, Jennings EG, Causton HC, Shore D, Grunstein M, Lander ES, Young RA (1999) Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402: 418-421