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Volumn 18, Issue 10, 2008, Pages 1562-1570

Global organization of replication time zones of the mouse genome

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

EID: 53549118586     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.079566.108     Document Type: Article
Times cited : (132)

References (56)
  • 3
    • 0034008103 scopus 로고    scopus 로고
    • Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci
    • Berezney, R., Dubey, D.D., and Huberman, J.A. 2000. Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci. Chromosoma 108: 471-484.
    • (2000) Chromosoma , vol.108 , pp. 471-484
    • Berezney, R.1    Dubey, D.D.2    Huberman, J.A.3
  • 4
    • 0028346421 scopus 로고
    • When replication forks stop
    • Bierne, H. and Michel, B. 1994. When replication forks stop. Mol. Microbiol. 13: 17-23.
    • (1994) Mol. Microbiol , vol.13 , pp. 17-23
    • Bierne, H.1    Michel, B.2
  • 5
    • 0020480696 scopus 로고
    • The temporal order of replication of murine immunoglobulin heavy chain constant region sequences corresponds to their linear order in the genome
    • Braunstein, J.D., Schulze, D., DelGiudice, T., Furst, A., and Schildkraut, C.L. 1982. The temporal order of replication of murine immunoglobulin heavy chain constant region sequences corresponds to their linear order in the genome. Nucleic Acids Res. 10: 6887-6902.
    • (1982) Nucleic Acids Res , vol.10 , pp. 6887-6902
    • Braunstein, J.D.1    Schulze, D.2    DelGiudice, T.3    Furst, A.4    Schildkraut, C.L.5
  • 6
    • 23344453807 scopus 로고    scopus 로고
    • Initiation of DNA replication at the human beta-globin 3′ enhancer
    • Buzina, A., Aladjem, M.I., Kolman, J.L., Wahl, G.M., and Ellis, J. 2005. Initiation of DNA replication at the human beta-globin 3′ enhancer. Nucleic Acids Res. 33: 4412-4424.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4412-4424
    • Buzina, A.1    Aladjem, M.I.2    Kolman, J.L.3    Wahl, G.M.4    Ellis, J.5
  • 7
    • 0027981484 scopus 로고
    • Allelic inactivation regulates olfactory receptor gene expression
    • Chess, A., Simon, I., Cedar, H., and Axel, R. 1994. Allelic inactivation regulates olfactory receptor gene expression. Cell 78: 823-834.
    • (1994) Cell , vol.78 , pp. 823-834
    • Chess, A.1    Simon, I.2    Cedar, H.3    Axel, R.4
  • 8
    • 0028652716 scopus 로고
    • High-resolution replication bands compared with morphologic G- and R-bands
    • Drouin, R., Holmquist, G.P., and Richer, C.L. 1994. High-resolution replication bands compared with morphologic G- and R-bands. Adv. Hum. Genet. 22: 47-115.
    • (1994) Adv. Hum. Genet , vol.22 , pp. 47-115
    • Drouin, R.1    Holmquist, G.P.2    Richer, C.L.3
  • 9
  • 11
    • 0022481322 scopus 로고
    • Temporal order of replication of Xenopus laevis 5S ribosomal RNA genes in somatic cells
    • Gilbert, D.M. 1986. Temporal order of replication of Xenopus laevis 5S ribosomal RNA genes in somatic cells. Proc. Natl. Acad. Sci. 83: 2924-2928.
    • (1986) Proc. Natl. Acad. Sci , vol.83 , pp. 2924-2928
    • Gilbert, D.M.1
  • 12
    • 0036591890 scopus 로고    scopus 로고
    • Replication timing and transcriptional control: Beyond cause and effect
    • Gilbert, D.M. 2002. Replication timing and transcriptional control: Beyond cause and effect. Curr. Opin. Cell Biol. 14: 377-383.
    • (2002) Curr. Opin. Cell Biol , vol.14 , pp. 377-383
    • Gilbert, D.M.1
  • 13
    • 33744785379 scopus 로고    scopus 로고
    • An epigenetic state associated with areas of gene duplication
    • Gimelbrant, A.A. and Chess, A. 2006. An epigenetic state associated with areas of gene duplication. Genome Res. 16: 723-729.
    • (2006) Genome Res , vol.16 , pp. 723-729
    • Gimelbrant, A.A.1    Chess, A.2
  • 14
    • 0021362841 scopus 로고
    • Replication timing of genes and middle repetitive sequences
    • Goldman, M.A., Holmquist, G.P., Gray, M.C., Caston, L.A., and Nag, A. 1984. Replication timing of genes and middle repetitive sequences. Science 224: 686-692.
    • (1984) Science , vol.224 , pp. 686-692
    • Goldman, M.A.1    Holmquist, G.P.2    Gray, M.C.3    Caston, L.A.4    Nag, A.5
  • 16
    • 44149084708 scopus 로고    scopus 로고
    • DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin
    • Goren, A., Tabib, A., Hecht, M., and Cedar, H. 2008. DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin. Genes & Dev. 22: 1319-1324.
    • (2008) Genes & Dev , vol.22 , pp. 1319-1324
    • Goren, A.1    Tabib, A.2    Hecht, M.3    Cedar, H.4
  • 17
    • 0018120376 scopus 로고
    • Eucaryotic DNA: Organization of the genome for replication
    • Hand, R. 1978. Eucaryotic DNA: Organization of the genome for replication. Cell 15: 317-325.
    • (1978) Cell , vol.15 , pp. 317-325
    • Hand, R.1
  • 18
    • 0027176828 scopus 로고
    • Association of fragile X syndrome with delayed replication of the FMR1 gene
    • Hansen, R.S., Canfield, T.K., Lamb, M.M., Gartler, S.M., and Laird, C.D. 1993. Association of fragile X syndrome with delayed replication of the FMR1 gene. Cell 73: 1403-1409.
    • (1993) Cell , vol.73 , pp. 1403-1409
    • Hansen, R.S.1    Canfield, T.K.2    Lamb, M.M.3    Gartler, S.M.4    Laird, C.D.5
  • 19
    • 0029790321 scopus 로고    scopus 로고
    • Role of late replication timing in the silencing of X-linked genes
    • Hansen, R.S., Canfield, T.K., Fjeld, A.D., and Gartler, S.M. 1996. Role of late replication timing in the silencing of X-linked genes. Hum. Mol. Genet. 5: 1345-1353.
    • (1996) Hum. Mol. Genet , vol.5 , pp. 1345-1353
    • Hansen, R.S.1    Canfield, T.K.2    Fjeld, A.D.3    Gartler, S.M.4
  • 20
    • 0041695905 scopus 로고    scopus 로고
    • Synchrony in human, mouse and bacterial cell cultures - a comparison
    • Helmstetter, C.E., Thornton, M., Romero, A., and Eward, K.L. 2003. Synchrony in human, mouse and bacterial cell cultures - a comparison. Cell Cycle 2: 42-45.
    • (2003) Cell Cycle , vol.2 , pp. 42-45
    • Helmstetter, C.E.1    Thornton, M.2    Romero, A.3    Eward, K.L.4
  • 21
    • 0023193418 scopus 로고
    • Role of replication time in the control of tissue-specific gene expression
    • Holmquist, G.P. 1987. Role of replication time in the control of tissue-specific gene expression. Am. J. Hum. Genet. 40: 151-173.
    • (1987) Am. J. Hum. Genet , vol.40 , pp. 151-173
    • Holmquist, G.P.1
  • 22
    • 0020357520 scopus 로고
    • Characterization of Giemsa dark- and light-band DNA
    • Holmquist, G., Gray, M., Porter, T., and Jordan, J. 1982. Characterization of Giemsa dark- and light-band DNA. Cell 31: 121-129.
    • (1982) Cell , vol.31 , pp. 121-129
    • Holmquist, G.1    Gray, M.2    Porter, T.3    Jordan, J.4
  • 23
    • 0016736680 scopus 로고
    • Changes in the rate of DNA replication fork movement during S phase in mammalian cells
    • Housman, D. and Huberman, J.A. 1975. Changes in the rate of DNA replication fork movement during S phase in mammalian cells. J. Mol. Biol. 94: 173-181.
    • (1975) J. Mol. Biol , vol.94 , pp. 173-181
    • Housman, D.1    Huberman, J.A.2
  • 25
    • 34250327950 scopus 로고    scopus 로고
    • Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas
    • Karnani, N., Taylor, C., Malhotra, A., and Dutta, A. 2007. Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas. Genome Res. 17: 865-876.
    • (2007) Genome Res , vol.17 , pp. 865-876
    • Karnani, N.1    Taylor, C.2    Malhotra, A.3    Dutta, A.4
  • 27
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb, J.D., Liu, X., Botstein, D., and Brown, P.O. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28: 327-334.
    • (2001) Nat. Genet , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 28
    • 33645993906 scopus 로고    scopus 로고
    • Efficient calculation of interval scores for DNA copy number data analysis
    • Lipson, D., Aumann, Y., Ben-Dor, A., Linial, N., and Yakhini, Z. 2006. Efficient calculation of interval scores for DNA copy number data analysis. J. Comput. Biol. 13: 215-228.
    • (2006) J. Comput. Biol , vol.13 , pp. 215-228
    • Lipson, D.1    Aumann, Y.2    Ben-Dor, A.3    Linial, N.4    Yakhini, Z.5
  • 29
    • 23444434202 scopus 로고    scopus 로고
    • A genomic view of eukaryotic DNA replication
    • MacAlpine, D.M. and Bell, S.P. 2005. A genomic view of eukaryotic DNA replication. Chromosome Res. 13: 309-326.
    • (2005) Chromosome Res , vol.13 , pp. 309-326
    • MacAlpine, D.M.1    Bell, S.P.2
  • 30
    • 10644297436 scopus 로고    scopus 로고
    • Coordination of replication and transcription along a Drosophila chromosome
    • MacAlpine, D.M., Rodriguez, H.K., and Bell, S.P. 2004. Coordination of replication and transcription along a Drosophila chromosome. Genes & Dev. 18: 3094-3105.
    • (2004) Genes & Dev , vol.18 , pp. 3094-3105
    • MacAlpine, D.M.1    Rodriguez, H.K.2    Bell, S.P.3
  • 35
    • 0033954246 scopus 로고    scopus 로고
    • Replication fork pausing and recombination or gimme a break
    • Rothstein, R., Michel, B., and Gangloff, S. 2000. Replication fork pausing and recombination or "gimme a break." Genes & Dev. 14: 1-10.
    • (2000) Genes & Dev , vol.14 , pp. 1-10
    • Rothstein, R.1    Michel, B.2    Gangloff, S.3
  • 36
    • 0025357957 scopus 로고
    • Asynchronous replication of homologous loci on human active and inactive X chromosomes
    • Schmidt, M. and Migeon, B.R. 1990. Asynchronous replication of homologous loci on human active and inactive X chromosomes. Proc. Natl. Acad. Sci. 87: 3685-3689.
    • (1990) Proc. Natl. Acad. Sci , vol.87 , pp. 3685-3689
    • Schmidt, M.1    Migeon, B.R.2
  • 37
    • 0036842221 scopus 로고    scopus 로고
    • Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing
    • Schubeler, D., Scalzo, D., Kooperberg, C., van Steensel, B., Delrow, J., and Groudine, M. 2002. Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing. Nat. Genet. 32: 438-442.
    • (2002) Nat. Genet , vol.32 , pp. 438-442
    • Schubeler, D.1    Scalzo, D.2    Kooperberg, C.3    van Steensel, B.4    Delrow, J.5    Groudine, M.6
  • 38
    • 0026511908 scopus 로고
    • Delineation of DNA replication time zones by fluorescence in situ hybridization
    • Selig, S., Okumura, K., Ward, D.C., and Cedar, H. 1992. Delineation of DNA replication time zones by fluorescence in situ hybridization. EMBO J. 11: 1217-1225.
    • (1992) EMBO J , vol.11 , pp. 1217-1225
    • Selig, S.1    Okumura, K.2    Ward, D.C.3    Cedar, H.4
  • 39
    • 0033613361 scopus 로고    scopus 로고
    • Asynchronous replication of imprinted genes is established in the gametes and maintained during development
    • Simon, I., Tenzen, T., Reubinoff, B.E., Hillman, D., McCarrey, J.R., and Cedar, H. 1999. Asynchronous replication of imprinted genes is established in the gametes and maintained during development. Nature 401: 929-932.
    • (1999) Nature , vol.401 , pp. 929-932
    • Simon, I.1    Tenzen, T.2    Reubinoff, B.E.3    Hillman, D.4    McCarrey, J.R.5    Cedar, H.6
  • 43
    • 0036244867 scopus 로고    scopus 로고
    • Production of minimally disturbed synchronous cultures of hematopoietic cells
    • Thornton, M., Eward, K.L., and Helmstetter, C.E. 2002. Production of minimally disturbed synchronous cultures of hematopoietic cells. Biotechniques 32: 1098-1105.
    • (2002) Biotechniques , vol.32 , pp. 1098-1105
    • Thornton, M.1    Eward, K.L.2    Helmstetter, C.E.3
  • 46
    • 0031260080 scopus 로고    scopus 로고
    • Mapping of replication origins and termination sites in the Duchenne muscular dystrophy gene
    • Verbovaia, L.V. and Razin, S.V. 1997. Mapping of replication origins and termination sites in the Duchenne muscular dystrophy gene. Genomics 45: 24-30.
    • (1997) Genomics , vol.45 , pp. 24-30
    • Verbovaia, L.V.1    Razin, S.V.2
  • 47
    • 0036156599 scopus 로고    scopus 로고
    • Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: Disease-related genes in timing-switch regions
    • Watanabe, Y., Fujiyama, A., Ichiba, Y., Hattori, M., Yada, T., Sakaki, Y., and Ikemura, T. 2002. Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: Disease-related genes in timing-switch regions. Hum. Mol. Genet. 11: 13-21.
    • (2002) Hum. Mol. Genet , vol.11 , pp. 13-21
    • Watanabe, Y.1    Fujiyama, A.2    Ichiba, Y.3    Hattori, M.4    Yada, T.5    Sakaki, Y.6    Ikemura, T.7
  • 52
    • 19644381697 scopus 로고    scopus 로고
    • Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states
    • Wu, R., Terry, A.V., Singh, P.B., and Gilbert, D.M. 2005. Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states. Mol. Biol. Cell 16: 2872-2881.
    • (2005) Mol. Biol. Cell , vol.16 , pp. 2872-2881
    • Wu, R.1    Terry, A.V.2    Singh, P.B.3    Gilbert, D.M.4
  • 53
    • 0036668464 scopus 로고    scopus 로고
    • Mapping of early firing origins on a replication profile of budding yeast
    • Yabuki, N., Terashima, H., and Kitada, K. 2002. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 7: 781-789.
    • (2002) Genes Cells , vol.7 , pp. 781-789
    • Yabuki, N.1    Terashima, H.2    Kitada, K.3
  • 55
    • 0019332119 scopus 로고
    • Rate of DNA replication fork movement within a single mammalian cell
    • Yurov, Y.B. 1980. Rate of DNA replication fork movement within a single mammalian cell. J. Mol. Biol. 136: 339-342.
    • (1980) J. Mol. Biol , vol.136 , pp. 339-342
    • Yurov, Y.B.1
  • 56
    • 0037078986 scopus 로고    scopus 로고
    • Establishment of transcriptional competence in early and late S phase
    • Zhang, J., Xu, F., Hashimshony, T., Keshet, I., and Cedar, H. 2002. Establishment of transcriptional competence in early and late S phase. Nature 420: 198-202.
    • (2002) Nature , vol.420 , pp. 198-202
    • Zhang, J.1    Xu, F.2    Hashimshony, T.3    Keshet, I.4    Cedar, H.5


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