-
2
-
-
77957984802
-
Paracoccidioidomycosis: the dimension of the problem of a neglected disease
-
Martinez R, (2010) Paracoccidioidomycosis: the dimension of the problem of a neglected disease. Rev Soc Bras Med Trop 43: 480.
-
(2010)
Rev Soc Bras Med Trop
, vol.43
, pp. 480
-
-
Martinez, R.1
-
3
-
-
85063496345
-
Epidemiology and paracoccidioidomycosis infection
-
In: Franco M, Lacaz CdS, Restrepo-Moreno A, Del Negro G, editors, Boca Raton, CRC Press
-
Wanke B, Londero AT, (1994) Epidemiology and paracoccidioidomycosis infection. In: Franco M, Lacaz CdS, Restrepo-Moreno A, Del Negro G, editors. Paracoccidioidomycosis Boca Raton CRC Press pp. 109-120.
-
(1994)
Paracoccidioidomycosis
, pp. 109-120
-
-
Wanke, B.1
Londero, A.T.2
-
4
-
-
56249089380
-
The neglected tropical diseases of Latin America and the Caribbean: a review of disease burden and distribution and a roadmap for control and elimination
-
doi: 10.1371/journal.pntd.0000300
-
Hotez PJ, Bottazzi ME, Franco-Paredes C, Ault SK, Periago MR, (2008) The neglected tropical diseases of Latin America and the Caribbean: a review of disease burden and distribution and a roadmap for control and elimination. PLoS Negl Trop Dis 2: e300 doi:10.1371/journal.pntd.0000300.
-
(2008)
PLoS Negl Trop Dis
, vol.2
-
-
Hotez, P.J.1
Bottazzi, M.E.2
Franco-Paredes, C.3
Ault, S.K.4
Periago, M.R.5
-
5
-
-
33846237249
-
Epidemiologic, clinical, and diagnostic aspects of coccidioidomycosis
-
Saubolle MA, McKellar PP, Sussland D, (2007) Epidemiologic, clinical, and diagnostic aspects of coccidioidomycosis. J Clin Microbiol 45: 26-30.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 26-30
-
-
Saubolle, M.A.1
McKellar, P.P.2
Sussland, D.3
-
6
-
-
0034960656
-
The habitat of Paracoccidioides brasiliensis: how far from solving the riddle?
-
Restrepo A, McEwen JG, Castaneda E, (2001) The habitat of Paracoccidioides brasiliensis: how far from solving the riddle? Med Mycol 39: 233-241.
-
(2001)
Med Mycol
, vol.39
, pp. 233-241
-
-
Restrepo, A.1
McEwen, J.G.2
Castaneda, E.3
-
7
-
-
11344293285
-
Paracoccidioidomycosis
-
In: Dismukes WE, Pappas PG, Sobel JD, editors, New York, NY, Oxford University Press
-
Restrepo-Moreno A, (2003) Paracoccidioidomycosis. In: Dismukes WE, Pappas PG, Sobel JD, editors. Clinical Mycology New York, NY Oxford University Press.
-
(2003)
Clinical Mycology
-
-
Restrepo-Moreno, A.1
-
8
-
-
0023200281
-
Mycelial- to yeast-phase transitions of the dimorphic fungi Blastomyces dermatitidis and Paracoccidioides brasiliensis
-
Medoff G, Painter A, Kobayashi GS, (1987) Mycelial- to yeast-phase transitions of the dimorphic fungi Blastomyces dermatitidis and Paracoccidioides brasiliensis. J Bacteriol 169: 4055-4060.
-
(1987)
J Bacteriol
, vol.169
, pp. 4055-4060
-
-
Medoff, G.1
Painter, A.2
Kobayashi, G.S.3
-
9
-
-
0036301549
-
Paracoccidioides brasiliensis and paracoccidioidomycosis: molecular approaches to morphogenesis, diagnosis, epidemiology, taxonomy and genetics
-
San-Blas G, Nino-Vega G, Iturriaga T, (2002) Paracoccidioides brasiliensis and paracoccidioidomycosis: molecular approaches to morphogenesis, diagnosis, epidemiology, taxonomy and genetics. Med Mycol 40: 225-242.
-
(2002)
Med Mycol
, vol.40
, pp. 225-242
-
-
San-Blas, G.1
Nino-Vega, G.2
Iturriaga, T.3
-
10
-
-
70349645483
-
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
-
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, et al. (2009) Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res 19: 1722-1731.
-
(2009)
Genome Res
, vol.19
, pp. 1722-1731
-
-
Sharpton, T.J.1
Stajich, J.E.2
Rounsley, S.D.3
Gardner, M.J.4
Wortman, J.R.5
-
11
-
-
33750329637
-
Defining virulence genes in the dimorphic fungi
-
Rappleye CA, Goldman WE, (2006) Defining virulence genes in the dimorphic fungi. Annu Rev Microbiol 60: 281-303.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 281-303
-
-
Rappleye, C.A.1
Goldman, W.E.2
-
12
-
-
33646253928
-
Global control of dimorphism and virulence in fungi
-
Nemecek JC, Wuthrich M, Klein BS, (2006) Global control of dimorphism and virulence in fungi. Science 312: 583-588.
-
(2006)
Science
, vol.312
, pp. 583-588
-
-
Nemecek, J.C.1
Wuthrich, M.2
Klein, B.S.3
-
13
-
-
0032537484
-
Structure elucidation of sphingolipids from the mycopathogen Paracoccidioides brasiliensis: an immunodominant beta-galactofuranose residue is carried by a novel glycosylinositol phosphorylceramide antigen
-
Levery SB, Toledo MS, Straus AH, Takahashi HK, (1998) Structure elucidation of sphingolipids from the mycopathogen Paracoccidioides brasiliensis: an immunodominant beta-galactofuranose residue is carried by a novel glycosylinositol phosphorylceramide antigen. Biochemistry 37: 8764-8775.
-
(1998)
Biochemistry
, vol.37
, pp. 8764-8775
-
-
Levery, S.B.1
Toledo, M.S.2
Straus, A.H.3
Takahashi, H.K.4
-
14
-
-
0031786750
-
Does the membrane's physical state control the expression of heat shock and other genes?
-
Vigh L, Maresca B, Harwood JL, (1998) Does the membrane's physical state control the expression of heat shock and other genes? Trends Biochem Sci 23: 369-374.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 369-374
-
-
Vigh, L.1
Maresca, B.2
Harwood, J.L.3
-
15
-
-
10744220357
-
Isolation of the CHS4 gene of Paracoccidioides brasiliensis and its accommodation in a new class of chitin synthases
-
Nino-Vega GA, Carrero L, San-Blas G, (2004) Isolation of the CHS4 gene of Paracoccidioides brasiliensis and its accommodation in a new class of chitin synthases. Med Mycol 42: 51-57.
-
(2004)
Med Mycol
, vol.42
, pp. 51-57
-
-
Nino-Vega, G.A.1
Carrero, L.2
San-Blas, G.3
-
16
-
-
0343920851
-
Differential expression of chitin synthase genes during temperature-induced dimorphic transitions in Paracoccidioides brasiliensis
-
Nino-Vega GA, Munro CA, San-Blas G, Gooday GW, Gow NA, (2000) Differential expression of chitin synthase genes during temperature-induced dimorphic transitions in Paracoccidioides brasiliensis. Med Mycol 38: 31-39.
-
(2000)
Med Mycol
, vol.38
, pp. 31-39
-
-
Nino-Vega, G.A.1
Munro, C.A.2
San-Blas, G.3
Gooday, G.W.4
Gow, N.A.5
-
18
-
-
33748956315
-
Transcriptome analysis and molecular studies on sulfur metabolism in the human pathogenic fungus Paracoccidioides brasiliensis
-
Ferreira ME, Marques Edos R, Malavazi I, Torres I, Restrepo A, et al. (2006) Transcriptome analysis and molecular studies on sulfur metabolism in the human pathogenic fungus Paracoccidioides brasiliensis. Mol Genet Genomics 276: 450-463.
-
(2006)
Mol Genet Genomics
, vol.276
, pp. 450-463
-
-
Ferreira, M.E.1
Marques Edos, R.2
Malavazi, I.3
Torres, I.4
Restrepo, A.5
-
19
-
-
29144442391
-
Transcriptome analysis of Paracoccidioides brasiliensis cells undergoing mycelium-to-yeast transition
-
Nunes LR, Costa de Oliveira R, Leite DB, da Silva VS, dos Reis Marques E, et al. (2005) Transcriptome analysis of Paracoccidioides brasiliensis cells undergoing mycelium-to-yeast transition. Eukaryot Cell 4: 2115-2128.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 2115-2128
-
-
Nunes, L.R.1
Costa de Oliveira, R.2
Leite, D.B.3
da Silva, V.S.4
dos Reis Marques, E.5
-
20
-
-
34548654789
-
Dimorphism and virulence in fungi
-
Klein BS, Tebbets B, (2007) Dimorphism and virulence in fungi. Curr Opin Microbiol 10: 314-319.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 314-319
-
-
Klein, B.S.1
Tebbets, B.2
-
21
-
-
28944448746
-
Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies
-
Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23: 65-73.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 65-73
-
-
Matute, D.R.1
McEwen, J.G.2
Puccia, R.3
Montes, B.A.4
San-Blas, G.5
-
22
-
-
15944405674
-
Virulence of Paracoccidioides brasiliensis and gp43 expression in isolates bearing known PbGP43 genotype
-
Carvalho KC, Ganiko L, Batista WL, Morais FV, Marques ER, et al. (2005) Virulence of Paracoccidioides brasiliensis and gp43 expression in isolates bearing known PbGP43 genotype. Microbes Infect 7: 55-65.
-
(2005)
Microbes Infect
, vol.7
, pp. 55-65
-
-
Carvalho, K.C.1
Ganiko, L.2
Batista, W.L.3
Morais, F.V.4
Marques, E.R.5
-
23
-
-
65649128923
-
Phylogenetic analysis reveals a high level of speciation in the Paracoccidioides genus
-
Teixeira MM, Theodoro RC, de Carvalho MJ, Fernandes L, Paes HC, et al. (2009) Phylogenetic analysis reveals a high level of speciation in the Paracoccidioides genus. Mol Phylogenet Evol 52: 273-283.
-
(2009)
Mol Phylogenet Evol
, vol.52
, pp. 273-283
-
-
Teixeira, M.M.1
Theodoro, R.C.2
de Carvalho, M.J.3
Fernandes, L.4
Paes, H.C.5
-
24
-
-
0031126768
-
Electrophoretic karyotype of clinical isolates of Paracoccidioides brasiliensis
-
Montoya AE, Moreno MN, Restrepo A, McEwen JG, (1997) Electrophoretic karyotype of clinical isolates of Paracoccidioides brasiliensis. Fungal Genet Biol 21: 223-227.
-
(1997)
Fungal Genet Biol
, vol.21
, pp. 223-227
-
-
Montoya, A.E.1
Moreno, M.N.2
Restrepo, A.3
McEwen, J.G.4
-
25
-
-
0028795691
-
Characterization of Paracoccidioides brasiliensis isolates by random amplified polymorphic DNA analysis
-
Soares CM, Madlun EE, da Silva SP, Pereira M, Felipe MS, (1995) Characterization of Paracoccidioides brasiliensis isolates by random amplified polymorphic DNA analysis. J Clin Microbiol 33: 505-507.
-
(1995)
J Clin Microbiol
, vol.33
, pp. 505-507
-
-
Soares, C.M.1
Madlun, E.E.2
da Silva, S.P.3
Pereira, M.4
Felipe, M.S.5
-
26
-
-
42549137785
-
Diversity in Paracoccidioides brasiliensis. The PbGP43 gene as a genetic marker
-
Puccia R, McEwen JG, Cisalpino PS, (2008) Diversity in Paracoccidioides brasiliensis. The PbGP43 gene as a genetic marker. Mycopathologia 165: 275-287.
-
(2008)
Mycopathologia
, vol.165
, pp. 275-287
-
-
Puccia, R.1
McEwen, J.G.2
Cisalpino, P.S.3
-
27
-
-
0034911878
-
Phenotype microarrays for high-throughput phenotypic testing and assay of gene function
-
Bochner BR, Gadzinski P, Panomitros E, (2001) Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. Genome Res 11: 1246-1255.
-
(2001)
Genome Res
, vol.11
, pp. 1246-1255
-
-
Bochner, B.R.1
Gadzinski, P.2
Panomitros, E.3
-
28
-
-
33644966287
-
Global carbon utilization profiles of wild-type, mutant, and transformant strains of Hypocrea jecorina
-
Druzhinina IS, Schmoll M, Seiboth B, Kubicek CP, (2006) Global carbon utilization profiles of wild-type, mutant, and transformant strains of Hypocrea jecorina. Appl Environ Microbiol 72: 2126-2133.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 2126-2133
-
-
Druzhinina, I.S.1
Schmoll, M.2
Seiboth, B.3
Kubicek, C.P.4
-
29
-
-
3843073364
-
Global nutritional profiling for mutant and chemical mode-of-action analysis in filamentous fungi
-
Tanzer MM, Arst HN, Skalchunes AR, Coffin M, Darveaux BA, et al. (2003) Global nutritional profiling for mutant and chemical mode-of-action analysis in filamentous fungi. Funct Integr Genomics 3: 160-170.
-
(2003)
Funct Integr Genomics
, vol.3
, pp. 160-170
-
-
Tanzer, M.M.1
Arst, H.N.2
Skalchunes, A.R.3
Coffin, M.4
Darveaux, B.A.5
-
30
-
-
0037267048
-
Whole-genome sequence assembly for mammalian genomes: Arachne 2
-
Jaffe DB, Butler J, Gnerre S, Mauceli E, Lindblad-Toh K, et al. (2003) Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res 13: 91-96.
-
(2003)
Genome Res
, vol.13
, pp. 91-96
-
-
Jaffe, D.B.1
Butler, J.2
Gnerre, S.3
Mauceli, E.4
Lindblad-Toh, K.5
-
31
-
-
12344335569
-
DAGchainer: a tool for mining segmental genome duplications and synteny
-
Haas BJ, Delcher AL, Wortman JR, Salzberg SL, (2004) DAGchainer: a tool for mining segmental genome duplications and synteny. Bioinformatics 20: 3643-3646.
-
(2004)
Bioinformatics
, vol.20
, pp. 3643-3646
-
-
Haas, B.J.1
Delcher, A.L.2
Wortman, J.R.3
Salzberg, S.L.4
-
32
-
-
0141468761
-
Transposable elements in filamentous fungi
-
Daboussi MJ, Capy P, (2003) Transposable elements in filamentous fungi. Annu Rev Microbiol 57: 275-299.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 275-299
-
-
Daboussi, M.J.1
Capy, P.2
-
33
-
-
77649329521
-
Identification and characterization of Tc1/mariner-like DNA transposons in genomes of the pathogenic fungi of the Paracoccidioides species complex
-
Marini MM, Zanforlin T, Santos PC, Barros RR, Guerra AC, et al. (2010) Identification and characterization of Tc1/mariner-like DNA transposons in genomes of the pathogenic fungi of the Paracoccidioides species complex. BMC Genomics 11: 130.
-
(2010)
BMC Genomics
, vol.11
, pp. 130
-
-
Marini, M.M.1
Zanforlin, T.2
Santos, P.C.3
Barros, R.R.4
Guerra, A.C.5
-
34
-
-
34447557855
-
The mitochondrial genome from the thermal dimorphic fungus Paracoccidioides brasiliensis
-
Cardoso MA, Tambor JH, Nobrega FG, (2007) The mitochondrial genome from the thermal dimorphic fungus Paracoccidioides brasiliensis. Yeast 24: 607-616.
-
(2007)
Yeast
, vol.24
, pp. 607-616
-
-
Cardoso, M.A.1
Tambor, J.H.2
Nobrega, F.G.3
-
35
-
-
67649117759
-
Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes
-
Wu Y, Yang J, Yang F, Liu T, Leng W, et al. (2009) Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes. BMC Genomics 10: 238.
-
(2009)
BMC Genomics
, vol.10
, pp. 238
-
-
Wu, Y.1
Yang, J.2
Yang, F.3
Liu, T.4
Leng, W.5
-
36
-
-
78349247942
-
The human fungal pathogen Paracoccidioides brasiliensis (Onygenales: Ajellomycetaceae) is a complex of two species: phylogenetic evidence from five mitochondrial markers
-
Salgado-Salazar C, Jones LR, Restrepo A, McEwen JG, (2010) The human fungal pathogen Paracoccidioides brasiliensis (Onygenales: Ajellomycetaceae) is a complex of two species: phylogenetic evidence from five mitochondrial markers. Cladistics 26: 613-624.
-
(2010)
Cladistics
, vol.26
, pp. 613-624
-
-
Salgado-Salazar, C.1
Jones, L.R.2
Restrepo, A.3
McEwen, J.G.4
-
37
-
-
33750329972
-
Reconstructing the early evolution of Fungi using a six-gene phylogeny
-
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, et al. (2006) Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443: 818-822.
-
(2006)
Nature
, vol.443
, pp. 818-822
-
-
James, T.Y.1
Kauff, F.2
Schoch, C.L.3
Matheny, P.B.4
Hofstetter, V.5
-
38
-
-
77955350734
-
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
-
Stajich JE, Wilke SK, Ahren D, Au CH, Birren BW, et al. (2010) Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc Natl Acad Sci U S A 107: 11889-11894.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11889-11894
-
-
Stajich, J.E.1
Wilke, S.K.2
Ahren, D.3
Au, C.H.4
Birren, B.W.5
-
39
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
-
40
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-238.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
-
41
-
-
0038589571
-
GeneTRACE-reconstruction of gene content of ancestral species
-
Kunin V, Ouzounis CA, (2003) GeneTRACE-reconstruction of gene content of ancestral species. Bioinformatics 19: 1412-1416.
-
(2003)
Bioinformatics
, vol.19
, pp. 1412-1416
-
-
Kunin, V.1
Ouzounis, C.A.2
-
42
-
-
33645557728
-
Hydrolytic enzymes in Paracoccidioides brasiliensis-ecological aspects
-
Benoliel B, Arraes FB, Reis VC, Siqueira SJ, Parachin NS, et al. (2005) Hydrolytic enzymes in Paracoccidioides brasiliensis-ecological aspects. Genet Mol Res 4: 450-461.
-
(2005)
Genet Mol Res
, vol.4
, pp. 450-461
-
-
Benoliel, B.1
Arraes, F.B.2
Reis, V.C.3
Siqueira, S.J.4
Parachin, N.S.5
-
43
-
-
43449098828
-
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
-
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, et al. (2008) Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol 26: 553-560.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 553-560
-
-
Martinez, D.1
Berka, R.M.2
Henrissat, B.3
Saloheimo, M.4
Arvas, M.5
-
44
-
-
75849133666
-
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
-
Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, et al. (2009) Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Brief Bioinform 11: 40-79.
-
(2009)
Brief Bioinform
, vol.11
, pp. 40-79
-
-
Karp, P.D.1
Paley, S.M.2
Krummenacker, M.3
Latendresse, M.4
Dale, J.M.5
-
45
-
-
0036801315
-
Secreted proteases from pathogenic fungi
-
Monod M, Capoccia S, Lechenne B, Zaugg C, Holdom M, et al. (2002) Secreted proteases from pathogenic fungi. Int J Med Microbiol 292: 405-419.
-
(2002)
Int J Med Microbiol
, vol.292
, pp. 405-419
-
-
Monod, M.1
Capoccia, S.2
Lechenne, B.3
Zaugg, C.4
Holdom, M.5
-
47
-
-
4644324164
-
Glutamic protease distribution is limited to filamentous fungi
-
Sims AH, Dunn-Coleman NS, Robson GD, Oliver SG, (2004) Glutamic protease distribution is limited to filamentous fungi. FEMS Microbiol Lett 239: 95-101.
-
(2004)
FEMS Microbiol Lett
, vol.239
, pp. 95-101
-
-
Sims, A.H.1
Dunn-Coleman, N.S.2
Robson, G.D.3
Oliver, S.G.4
-
48
-
-
57649158509
-
Inhibition of a secreted glutamic peptidase prevents growth of the fungus Talaromyces emersonii
-
O'Donoghue AJ, Mahon CS, Goetz DH, O'Malley JM, Gallagher DM, et al. (2008) Inhibition of a secreted glutamic peptidase prevents growth of the fungus Talaromyces emersonii. J Biol Chem 283: 29186-29195.
-
(2008)
J Biol Chem
, vol.283
, pp. 29186-29195
-
-
O'Donoghue, A.J.1
Mahon, C.S.2
Goetz, D.H.3
O'Malley, J.M.4
Gallagher, D.M.5
-
49
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen JD, Nielsen H, von Heijne G, Brunak S, (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783-795.
-
(2004)
J Mol Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
50
-
-
25444443911
-
A metalloproteinase of Coccidioides posadasii contributes to evasion of host detection
-
Hung CY, Seshan KR, Yu JJ, Schaller R, Xue J, et al. (2005) A metalloproteinase of Coccidioides posadasii contributes to evasion of host detection. Infect Immun 73: 6689-6703.
-
(2005)
Infect Immun
, vol.73
, pp. 6689-6703
-
-
Hung, C.Y.1
Seshan, K.R.2
Yu, J.J.3
Schaller, R.4
Xue, J.5
-
51
-
-
0033539167
-
Suppression of Raf-1 kinase activity and MAP kinase signalling by RKIP
-
Yeung K, Seitz T, Li S, Janosch P, McFerran B, et al. (1999) Suppression of Raf-1 kinase activity and MAP kinase signalling by RKIP. Nature 401: 173-177.
-
(1999)
Nature
, vol.401
, pp. 173-177
-
-
Yeung, K.1
Seitz, T.2
Li, S.3
Janosch, P.4
McFerran, B.5
-
52
-
-
0029020282
-
Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification
-
Hanks SK, Hunter T, (1995) Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 9: 576-596.
-
(1995)
FASEB J
, vol.9
, pp. 576-596
-
-
Hanks, S.K.1
Hunter, T.2
-
53
-
-
0000127673
-
2.2 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor
-
Zheng J, Trafny EA, Knighton DR, Xuong NH, Taylor SS, et al. (1993) 2.2 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor. Acta Crystallogr D Biol Crystallogr 49: 362-365.
-
(1993)
Acta Crystallogr D Biol Crystallogr
, vol.49
, pp. 362-365
-
-
Zheng, J.1
Trafny, E.A.2
Knighton, D.R.3
Xuong, N.H.4
Taylor, S.S.5
-
54
-
-
37449008735
-
Transcriptome profiling of Paracoccidioides brasiliensis yeast-phase cells recovered from infected mice brings new insights into fungal response upon host interaction
-
Costa M, Borges CL, Bailao AM, Meirelles GV, Mendonca YA, et al. (2007) Transcriptome profiling of Paracoccidioides brasiliensis yeast-phase cells recovered from infected mice brings new insights into fungal response upon host interaction. Microbiology 153: 4194-4207.
-
(2007)
Microbiology
, vol.153
, pp. 4194-4207
-
-
Costa, M.1
Borges, C.L.2
Bailao, A.M.3
Meirelles, G.V.4
Mendonca, Y.A.5
-
55
-
-
21644441527
-
Transcriptional profiles of the human pathogenic fungus Paracoccidioides brasiliensis in mycelium and yeast cells
-
Felipe MS, Andrade RV, Arraes FB, Nicola AM, Maranhao AQ, et al. (2005) Transcriptional profiles of the human pathogenic fungus Paracoccidioides brasiliensis in mycelium and yeast cells. J Biol Chem 280: 24706-24714.
-
(2005)
J Biol Chem
, vol.280
, pp. 24706-24714
-
-
Felipe, M.S.1
Andrade, R.V.2
Arraes, F.B.3
Nicola, A.M.4
Maranhao, A.Q.5
-
56
-
-
0037524424
-
Expressed sequence tag analysis of the human pathogen Paracoccidioides brasiliensis yeast phase: identification of putative homologues of Candida albicans virulence and pathogenicity genes
-
Goldman GH, dos Reis Marques E, Duarte Ribeiro DC, de Souza Bernardes LA, Quiapin AC, et al. (2003) Expressed sequence tag analysis of the human pathogen Paracoccidioides brasiliensis yeast phase: identification of putative homologues of Candida albicans virulence and pathogenicity genes. Eukaryot Cell 2: 34-48.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 34-48
-
-
Goldman, G.H.1
dos Reis Marques, E.2
Duarte Ribeiro, D.C.3
de Souza Bernardes, L.A.4
Quiapin, A.C.5
-
58
-
-
0347928835
-
Functional analysis of CaRAP1, encoding the Repressor/activator protein 1 of Candida albicans
-
Biswas K, Rieger KJ, Morschhauser J, (2003) Functional analysis of CaRAP1, encoding the Repressor/activator protein 1 of Candida albicans. Gene 307: 151-158.
-
(2003)
Gene
, vol.307
, pp. 151-158
-
-
Biswas, K.1
Rieger, K.J.2
Morschhauser, J.3
-
59
-
-
0028569082
-
Suppression of hyphal formation in Candida albicans by mutation of a STE12 homolog
-
Liu H, Kohler J, Fink GR, (1994) Suppression of hyphal formation in Candida albicans by mutation of a STE12 homolog. Science 266: 1723-1726.
-
(1994)
Science
, vol.266
, pp. 1723-1726
-
-
Liu, H.1
Kohler, J.2
Fink, G.R.3
-
60
-
-
2942694459
-
Sequence elements necessary for transcriptional activation of BAD1 in the yeast phase of Blastomyces dermatitidis
-
Rooney PJ, Klein BS, (2004) Sequence elements necessary for transcriptional activation of BAD1 in the yeast phase of Blastomyces dermatitidis. Eukaryot Cell 3: 785-794.
-
(2004)
Eukaryot Cell
, vol.3
, pp. 785-794
-
-
Rooney, P.J.1
Klein, B.S.2
-
61
-
-
0025034813
-
The b alleles of U. maydis, whose combinations program pathogenic development, code for polypeptides containing a homeodomain-related motif
-
Schulz B, Banuett F, Dahl M, Schlesinger R, Schafer W, et al. (1990) The b alleles of U. maydis, whose combinations program pathogenic development, code for polypeptides containing a homeodomain-related motif. Cell 60: 295-306.
-
(1990)
Cell
, vol.60
, pp. 295-306
-
-
Schulz, B.1
Banuett, F.2
Dahl, M.3
Schlesinger, R.4
Schafer, W.5
-
62
-
-
0029015191
-
Cloning and expression of cDNA encoding a protein that binds a palindromic promoter element essential for induction of fungal cutinase by plant cutin
-
Li D, Kolattukudy PE, (1995) Cloning and expression of cDNA encoding a protein that binds a palindromic promoter element essential for induction of fungal cutinase by plant cutin. J Biol Chem 270: 11753-11756.
-
(1995)
J Biol Chem
, vol.270
, pp. 11753-11756
-
-
Li, D.1
Kolattukudy, P.E.2
-
63
-
-
0006705211
-
Studies on the growth of Histoplasma capsulatum. IV. Factors influencing conversion of the mycelial phase to the yeast phase
-
Pine L, Peacock CL, (1958) Studies on the growth of Histoplasma capsulatum. IV. Factors influencing conversion of the mycelial phase to the yeast phase. J Bacteriol 75: 167-174.
-
(1958)
J Bacteriol
, vol.75
, pp. 167-174
-
-
Pine, L.1
Peacock, C.L.2
-
64
-
-
0016666212
-
Control of dimorphism in Candida albicans by zinc: effect on cell morphology and composition
-
Yamaguchi H, (1975) Control of dimorphism in Candida albicans by zinc: effect on cell morphology and composition. J Gen Microbiol 86: 370-372.
-
(1975)
J Gen Microbiol
, vol.86
, pp. 370-372
-
-
Yamaguchi, H.1
-
65
-
-
28844461287
-
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
-
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, et al. (2005) Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature 438: 1105-1115.
-
(2005)
Nature
, vol.438
, pp. 1105-1115
-
-
Galagan, J.E.1
Calvo, S.E.2
Cuomo, C.3
Ma, L.J.4
Wortman, J.R.5
-
66
-
-
75649124512
-
Organization and evolutionary trajectory of the mating type (MAT) locus in dermatophyte and dimorphic fungal pathogens
-
Li W, Metin B, White TC, Heitman J, (2010) Organization and evolutionary trajectory of the mating type (MAT) locus in dermatophyte and dimorphic fungal pathogens. Eukaryot Cell 9: 46-58.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 46-58
-
-
Li, W.1
Metin, B.2
White, T.C.3
Heitman, J.4
-
67
-
-
77649192708
-
Presence and expression of the mating type locus in Paracoccidioides brasiliensis isolates
-
Torres I, Garcia AM, Hernandez O, Gonzalez A, McEwen JG, et al. (2009) Presence and expression of the mating type locus in Paracoccidioides brasiliensis isolates. Fungal Genet Biol 47: 373-380.
-
(2009)
Fungal Genet Biol
, vol.47
, pp. 373-380
-
-
Torres, I.1
Garcia, A.M.2
Hernandez, O.3
Gonzalez, A.4
McEwen, J.G.5
-
68
-
-
51449085783
-
An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis
-
doi:10.1371/journal.pone.0002879
-
Malik SB, Pightling AW, Stefaniak LM, Schurko AM, Logsdon JM Jr, (2007) An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis. PLoS ONE 3: e2879 doi:10.1371/journal.pone.0002879.
-
(2007)
PLoS ONE
, vol.3
-
-
Malik, S.B.1
Pightling, A.W.2
Stefaniak, L.M.3
Schurko, A.M.4
Logsdon Jr., J.M.5
-
69
-
-
0347994901
-
Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes
-
Kroken S, Glass NL, Taylor JW, Yoder OC, Turgeon BG, (2003) Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes. Proc Natl Acad Sci U S A 100: 15670-15675.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 15670-15675
-
-
Kroken, S.1
Glass, N.L.2
Taylor, J.W.3
Yoder, O.C.4
Turgeon, B.G.5
-
70
-
-
77955274600
-
SMURF: Genomic mapping of fungal secondary metabolite clusters
-
Khaldi N, Seifuddin FT, Turner G, Haft D, Nierman WC, et al. (2010) SMURF: Genomic mapping of fungal secondary metabolite clusters. Fungal Genet Biol 47: 736-741.
-
(2010)
Fungal Genet Biol
, vol.47
, pp. 736-741
-
-
Khaldi, N.1
Seifuddin, F.T.2
Turner, G.3
Haft, D.4
Nierman, W.C.5
-
71
-
-
4143090400
-
LaeA, a regulator of secondary metabolism in Aspergillus spp
-
Bok JW, Keller NP, (2004) LaeA, a regulator of secondary metabolism in Aspergillus spp. Eukaryot Cell 3: 527-535.
-
(2004)
Eukaryot Cell
, vol.3
, pp. 527-535
-
-
Bok, J.W.1
Keller, N.P.2
-
72
-
-
33748507381
-
Secondary metabolic gene cluster silencing in Aspergillus nidulans
-
Bok JW, Noordermeer D, Kale SP, Keller NP, (2006) Secondary metabolic gene cluster silencing in Aspergillus nidulans. Mol Microbiol 61: 1636-1645.
-
(2006)
Mol Microbiol
, vol.61
, pp. 1636-1645
-
-
Bok, J.W.1
Noordermeer, D.2
Kale, S.P.3
Keller, N.P.4
-
73
-
-
55749094360
-
Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum
-
Webster RH, Sil A, (2008) Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum. Proc Natl Acad Sci U S A 105: 14573-14578.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14573-14578
-
-
Webster, R.H.1
Sil, A.2
-
74
-
-
0041922589
-
S-Adenosyl-L-methionine inhibitors delta(24)-sterol methyltransferase and delta(24(28))-sterol methylreductase as possible agents against Paracoccidioides brasiliensis
-
Visbal G, Alvarez A, Moreno B, San-Blas G, (2003) S-Adenosyl-L-methionine inhibitors delta(24)-sterol methyltransferase and delta(24(28))-sterol methylreductase as possible agents against Paracoccidioides brasiliensis. Antimicrob Agents Chemother 47: 2966-2970.
-
(2003)
Antimicrob Agents Chemother
, vol.47
, pp. 2966-2970
-
-
Visbal, G.1
Alvarez, A.2
Moreno, B.3
San-Blas, G.4
-
75
-
-
77955511438
-
Cloning, mechanistic and functional analysis of a fungal sterol C24-methyltransferase implicated in brassicasterol biosynthesis
-
Pereira M, Song Z, Santos-Silva LK, Richards MH, Nguyen TT, et al. (2010) Cloning, mechanistic and functional analysis of a fungal sterol C24-methyltransferase implicated in brassicasterol biosynthesis. Biochim Biophys Acta 1801 pp. 1163-1174.
-
(2010)
Biochim Biophys Acta 1801
, pp. 1163-1174
-
-
Pereira, M.1
Song, Z.2
Santos-Silva, L.K.3
Richards, M.H.4
Nguyen, T.T.5
-
76
-
-
33748920925
-
The structure and synthesis of the fungal cell wall
-
Bowman SM, J. Free S, (2006) The structure and synthesis of the fungal cell wall. BioEssays 28: 799-808.
-
(2006)
BioEssays
, vol.28
, pp. 799-808
-
-
Bowman, S.M.1
Free, S.J.2
-
77
-
-
78649663227
-
Caspofungin affects growth of Paracoccidioides brasiliensis in both morphological phases
-
Rodriguez-Brito S, Nino-Vega G, San-Blas G, (2010) Caspofungin affects growth of Paracoccidioides brasiliensis in both morphological phases. Antimicrob Agents Chemother 54: 5391-5394.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 5391-5394
-
-
Rodriguez-Brito, S.1
Nino-Vega, G.2
San-Blas, G.3
-
78
-
-
0015324053
-
Biochemical studies on the thermal dimorphism of Paracoccidioides brasiliensis
-
Kanetsuna F, Carbonell LM, Azuma I, Yamamura Y, (1972) Biochemical studies on the thermal dimorphism of Paracoccidioides brasiliensis. J Bacteriol 110: 208-218.
-
(1972)
J Bacteriol
, vol.110
, pp. 208-218
-
-
Kanetsuna, F.1
Carbonell, L.M.2
Azuma, I.3
Yamamura, Y.4
-
79
-
-
23844432039
-
Morphogenesis in other agents of systemic mycoses
-
Norfolk, England, Caister Academic Press
-
San-Blas G, Niño-Vega G, (2004) Morphogenesis in other agents of systemic mycoses. Pathogenic Fungi: Structural Biology and Taxonomy Norfolk, England Caister Academic Press pp. 167-220.
-
(2004)
Pathogenic Fungi: Structural Biology and Taxonomy
, pp. 167-220
-
-
San-Blas, G.1
Niño-Vega, G.2
-
80
-
-
2942552252
-
Survey of the Botrytis cinerea chitin synthase multigenic family through the analysis of six euascomycetes genomes
-
Choquer M, Boccara M, Goncalves IR, Soulie MC, Vidal-Cros A, (2004) Survey of the Botrytis cinerea chitin synthase multigenic family through the analysis of six euascomycetes genomes. Eur J Biochem 271: 2153-2164.
-
(2004)
Eur J Biochem
, vol.271
, pp. 2153-2164
-
-
Choquer, M.1
Boccara, M.2
Goncalves, I.R.3
Soulie, M.C.4
Vidal-Cros, A.5
-
81
-
-
33746431354
-
Exocellular proteolytic activity of Paracoccidioides brasiliensis: cleavage of components associated with the basement membrane
-
Puccia R, Carmona AK, Gesztesi JL, Juliano L, Travassos LR, (1998) Exocellular proteolytic activity of Paracoccidioides brasiliensis: cleavage of components associated with the basement membrane. Med Mycol 36: 345-348.
-
(1998)
Med Mycol
, vol.36
, pp. 345-348
-
-
Puccia, R.1
Carmona, A.K.2
Gesztesi, J.L.3
Juliano, L.4
Travassos, L.R.5
-
82
-
-
0032062979
-
Cytokines produced by susceptible and resistant mice in the course of Paracoccidioides brasiliensis infection
-
Calich VL, Kashino SS, (1998) Cytokines produced by susceptible and resistant mice in the course of Paracoccidioides brasiliensis infection. Braz J Med Biol Res 31: 615-623.
-
(1998)
Braz J Med Biol Res
, vol.31
, pp. 615-623
-
-
Calich, V.L.1
Kashino, S.S.2
-
83
-
-
33845681003
-
Genome size and ploidy of Paracoccidioides brasiliensis reveals a haploid DNA content: flow cytometry and GP43 sequence analysis
-
Almeida AJ, Matute DR, Carmona JA, Martins M, Torres I, et al. (2007) Genome size and ploidy of Paracoccidioides brasiliensis reveals a haploid DNA content: flow cytometry and GP43 sequence analysis. Fungal Genet Biol 44: 25-31.
-
(2007)
Fungal Genet Biol
, vol.44
, pp. 25-31
-
-
Almeida, A.J.1
Matute, D.R.2
Carmona, J.A.3
Martins, M.4
Torres, I.5
-
84
-
-
0037323869
-
Transcriptome characterization of the dimorphic and pathogenic fungus Paracoccidioides brasiliensis by EST analysis
-
Felipe MS, Andrade RV, Petrofeza SS, Maranhao AQ, Torres FA, et al. (2003) Transcriptome characterization of the dimorphic and pathogenic fungus Paracoccidioides brasiliensis by EST analysis. Yeast 20: 263-271.
-
(2003)
Yeast
, vol.20
, pp. 263-271
-
-
Felipe, M.S.1
Andrade, R.V.2
Petrofeza, S.S.3
Maranhao, A.Q.4
Torres, F.A.5
-
86
-
-
0029150443
-
Optical mapping: a novel, single-molecule approach to genomic analysis
-
Samad A, Huff EF, Cai W, Schwartz DC, (1995) Optical mapping: a novel, single-molecule approach to genomic analysis. Genome Res 5: 1-4.
-
(1995)
Genome Res
, vol.5
, pp. 1-4
-
-
Samad, A.1
Huff, E.F.2
Cai, W.3
Schwartz, D.C.4
-
87
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biol 5: R12.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
-
88
-
-
39749179047
-
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
-
Ellinghaus D, Kurtz S, Willhoeft U, (2008) LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics 9: 18.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 18
-
-
Ellinghaus, D.1
Kurtz, S.2
Willhoeft, U.3
-
89
-
-
34547592867
-
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
-
Xu Z, Wang H, (2007) LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res 35: W265-268.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Xu, Z.1
Wang, H.2
-
90
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, et al. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
-
91
-
-
42349111552
-
A universal classification of eukaryotic transposable elements implemented in Repbase
-
author reply 414
-
Kapitonov VV, Jurka J, (2008) A universal classification of eukaryotic transposable elements implemented in Repbase. Nat Rev Genet 9: 411-412 author reply 414.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 411-412
-
-
Kapitonov, V.V.1
Jurka, J.2
-
92
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
93
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR, (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform 23: 205-211.
-
(2009)
Genome Inform
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
94
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, et al. (2010) The Pfam protein families database. Nucleic Acids Res 38: D211-222.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
-
95
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
96
-
-
10044222704
-
CLANS: a Java application for visualizing protein families based on pairwise similarity
-
Frickey T, Lupas A, (2004) CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20: 3702-3704.
-
(2004)
Bioinformatics
, vol.20
, pp. 3702-3704
-
-
Frickey, T.1
Lupas, A.2
-
97
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
98
-
-
65349170082
-
EFICAz2: enzyme function inference by a combined approach enhanced by machine learning
-
Arakaki AK, Huang Y, Skolnick J, (2009) EFICAz2: enzyme function inference by a combined approach enhanced by machine learning. BMC Bioinformatics 10: 107.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 107
-
-
Arakaki, A.K.1
Huang, Y.2
Skolnick, J.3
-
99
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, et al. (2005) Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res 33: 6083-6089.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
-
100
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ Jr, Roos DS, (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr., C.J.2
Roos, D.S.3
-
101
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
102
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera G, Castresana J, (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56: 564-577.
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
103
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
104
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z, (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
105
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R, (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
106
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
-
Gardes M, Bruns TD, (1993) ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
-
(1993)
Mol Ecol
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
107
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors, New York, Academic Press
-
White TJ, Bruns T, Lee S, Taylor JW, (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR Protocols: A Guide to Methods and Applications New York Academic Press pp. 315-322.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.W.4
-
108
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
109
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14: 1188-1190.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
|