Paml: A program package for phylogenetic analysis by maximum likelihood

Bioinformatics

Volumn 13, Issue 5, 1997, Pages 555-556

  Yang, Ziheng ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Gallon Laboratory   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; COMPUTER PROGRAM; DNA DETERMINATION; EVOLUTION; MAXIMUM LIKELIHOOD METHOD; PHYLOGENY; PRIORITY JOURNAL; SHORT SURVEY;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA; LIKELIHOOD FUNCTIONS; MATHEMATICAL COMPUTING; PHYLOGENY; SOFTWARE;

EID: 0030683599     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/13.5.555     Document Type: Article

References (7)

1. Goldman, N. and Yang, Z. (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mot. Biol. Evol.. 11. 725-736.
2. HartiganJ.A. (1973) Minimum evolution fits to a given tree. Biometrics, 29. 53-65.
3. Jones.D.T., Taylor, W.R. and Thomton.J.M. (1992) The rapid generation of mutation data matrices from protein sequences. Comput Applic. Biosa., 8, 275-282.
4. Rannala.B. and Yang.Z. (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference../. Mnl Evol., 43, 304-311.
5. Sullivan, J., Holsinger, K.E. and Simon, C. (1995) Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmontine rodents. Mol Biol. Evol., 12,988-1001.
6. Yang.Z. and Kumar, S. (1996) Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites. Mol. Biol. Evol., 13, 650-659.
7. Yang, Z. and Rannala.B. (1997) Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol Biol Evol., 14. 717-724.