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Volumn 10, Issue , 2009, Pages

Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME RNA; TRANSFER RNA; FUNGAL DNA;

EID: 67649117759     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-238     Document Type: Article
Times cited : (43)

References (71)
  • 2
    • 33750591647 scopus 로고    scopus 로고
    • Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags
    • 1621083 17032460 10.1186/1471-2164-7-255
    • Wang L Ma L Leng W Liu T Yu L Yang J Yang L Zhang W Zhang Q Dong J et al Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags BMC Genomics 2006, 7:255. 1621083 17032460 10.1186/1471-2164-7-255
    • (2006) BMC Genomics , vol.7 , pp. 255
    • Wang, L.1    Ma, L.2    Leng, W.3    Liu, T.4    Yu, L.5    Yang, J.6    Yang, L.7    Zhang, W.8    Zhang, Q.9    Dong, J.10
  • 3
    • 55149121615 scopus 로고    scopus 로고
    • Dermatophytoses in animals
    • 10.1007/s11046-008-9102-7 18478363
    • Chermette R Ferreiro L J G Dermatophytoses in animals Mycopathologia 2008, 166(5-6):385-405. 10.1007/s11046-008-9102-7 18478363
    • (2008) Mycopathologia , vol.166 , Issue.5-6 , pp. 385-405
    • Chermette, R.1    Ferreiro, L.J.G.2
  • 4
    • 1242341375 scopus 로고    scopus 로고
    • Multiplication of an ancestral gene encoding secreted fungalysin preceded species differentiation in the dermatophytes Trichophyton and Microsporum
    • 10.1099/mic.0.26690-0 14766908
    • Jousson O Lechenne B Bontems O Capoccia S Mignon B Barblan J Quadroni M Monod M Multiplication of an ancestral gene encoding secreted fungalysin preceded species differentiation in the dermatophytes Trichophyton and Microsporum Microbiology 2004, 150(Pt 2):301-310. 10.1099/mic.0.26690-0 14766908
    • (2004) Microbiology , vol.150 , Issue.PART 2 , pp. 301-310
    • Jousson, O.1    Lechenne, B.2    Bontems, O.3    Capoccia, S.4    Mignon, B.5    Barblan, J.6    Quadroni, M.7    Monod, M.8
  • 5
    • 34547750852 scopus 로고    scopus 로고
    • Widespread tinea corporis caused by Trichophyton rubrum with non-typical cultural characteristics - Diagnosis via PCR
    • 10.1111/j.1439-0507.2007.01427.x 17681051
    • Seyfarth F Ziemer M Graser Y Elsner P Hipler UC Widespread tinea corporis caused by Trichophyton rubrum with non-typical cultural characteristics - diagnosis via PCR Mycoses 2007, 50(Suppl 2):26-30. 10.1111/j.1439-0507.2007.01427.x 17681051
    • (2007) Mycoses , vol.50 , Issue.SUPPL. 2 , pp. 26-30
    • Seyfarth, F.1    Ziemer, M.2    Graser, Y.3    Elsner, P.4    Hipler, U.C.5
  • 6
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • 41 10.1038/32096 9510246
    • Martin W Muller M The hydrogen hypothesis for the first eukaryote Nature 1998, 392:6671-37. 41 10.1038/32096 9510246
    • (1998) Nature , vol.392 , pp. 6637-6671
    • Martin, W.1    Muller, M.2
  • 7
    • 22544464155 scopus 로고    scopus 로고
    • Fungal evolution: The case of the vanishing mitochondrion
    • 10.1016/j.mib.2005.06.009 15993645
    • Bullerwell CE Lang BF Fungal evolution: The case of the vanishing mitochondrion Curr Opin Microbiol 2005, 8(4):362-369. 10.1016/ j.mib.2005.06.009 15993645
    • (2005) Curr Opin Microbiol , vol.8 , Issue.4 , pp. 362-369
    • Bullerwell, C.E.1    Lang, B.F.2
  • 8
    • 0033367329 scopus 로고    scopus 로고
    • Mitochondrial genome evolution and the origin of eukaryotes
    • 10.1146/annurev.genet.33.1.351 10690412
    • Lang BF Gray MW Burger G Mitochondrial genome evolution and the origin of eukaryotes Annu Rev Genet 1999, 33:351-397. 10.1146/ annurev.genet.33.1.351 10690412
    • (1999) Annu Rev Genet , vol.33 , pp. 351-397
    • Lang, B.F.1    Gray, M.W.2    Burger, G.3
  • 9
    • 0032762209 scopus 로고    scopus 로고
    • Evolution of organellar genomes
    • 10.1016/S0959-437X(99)00030-1 10607615
    • Gray MW Evolution of organellar genomes Curr Opin Genet Dev 1999, 9(6):678-687. 10.1016/S0959-437X(99)00030-1 10607615
    • (1999) Curr Opin Genet Dev , vol.9 , Issue.6 , pp. 678-687
    • Gray, M.W.1
  • 10
    • 0037471715 scopus 로고    scopus 로고
    • On the origin of mitochondria: A genomics perspective
    • 1693097 12594925 10.1098/rstb.2002.1193
    • Andersson SG Karlberg O Canback B Kurland CG On the origin of mitochondria: A genomics perspective Philos Trans R Soc Lond B Biol Sci 2003, 358(1429):165-177. 1693097 12594925 10.1098/rstb.2002.1193
    • (2003) Philos Trans R Soc Lond B Biol Sci , vol.358 , Issue.1429 , pp. 165-177
    • Andersson, S.G.1    Karlberg, O.2    Canback, B.3    Kurland, C.G.4
  • 11
    • 0344861878 scopus 로고    scopus 로고
    • Mitochondrial genomes: Anything goes
    • 10.1016/j.tig.2003.10.012 14642752
    • Burger G Gray MW Lang BF Mitochondrial genomes: Anything goes Trends Genet 2003, 19(12):709-716. 10.1016/j.tig.2003.10.012 14642752
    • (2003) Trends Genet , vol.19 , Issue.12 , pp. 709-716
    • Burger, G.1    Gray, M.W.2    Lang, B.F.3
  • 12
    • 33745101161 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of the dermatophyte fungus Epidermophyton floccosum
    • 10.1007/s00294-006-0057-2 16450111
    • Tambor JH Guedes RF Nobrega MP Nobrega FG The complete DNA sequence of the mitochondrial genome of the dermatophyte fungus Epidermophyton floccosum Curr Genet 2006, 49(5):302-308. 10.1007/s00294-006-0057-2 16450111
    • (2006) Curr Genet , vol.49 , Issue.5 , pp. 302-308
    • Tambor, J.H.1    Guedes, R.F.2    Nobrega, M.P.3    Nobrega, F.G.4
  • 13
    • 4644299619 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome: Protist connections to animals, fungi and plants
    • 10.1016/j.mib.2004.08.008 15451509
    • Bullerwell CE Gray MW Evolution of the mitochondrial genome: Protist connections to animals, fungi and plants Curr Opin Microbiol 2004, 7(5):528-534. 10.1016/j.mib.2004.08.008 15451509
    • (2004) Curr Opin Microbiol , vol.7 , Issue.5 , pp. 528-534
    • Bullerwell, C.E.1    Gray, M.W.2
  • 14
    • 0344719444 scopus 로고    scopus 로고
    • Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus
    • 10.1016/S1055-7903(03)00194-5 14615181
    • Adams KL Palmer JD Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus Mol Phylogenet Evol 2003, 29(3):380-395. 10.1016/S1055-7903(03)00194-5 14615181
    • (2003) Mol Phylogenet Evol , vol.29 , Issue.3 , pp. 380-395
    • Adams, K.L.1    Palmer, J.D.2
  • 15
    • 51449123384 scopus 로고    scopus 로고
    • Evolutionary implications of non-neutral mitochondrial genetic variation
    • 10.1016/j.tree.2008.05.011 18722688
    • Dowling DK Friberg U Lindell J Evolutionary implications of non-neutral mitochondrial genetic variation Trends Ecol Evol 2008, 23(10):546-554. 10.1016/j.tree.2008.05.011 18722688
    • (2008) Trends Ecol Evol , vol.23 , Issue.10 , pp. 546-554
    • Dowling, D.K.1    Friberg, U.2    Lindell, J.3
  • 16
    • 34249062487 scopus 로고    scopus 로고
    • Positive and negative selection on the mitochondrial genome
    • 10.1016/j.tig.2007.03.008 17418445
    • Meiklejohn CD Montooth KL Rand DM Positive and negative selection on the mitochondrial genome Trends Genet 2007, 23(6):259-263. 10.1016/ j.tig.2007.03.008 17418445
    • (2007) Trends Genet , vol.23 , Issue.6 , pp. 259-263
    • Meiklejohn, C.D.1    Montooth, K.L.2    Rand, D.M.3
  • 17
    • 0035399727 scopus 로고    scopus 로고
    • Natural selection and the evolution of mtDNA-encoded peptides: Evidence for intergenomic co-adaptation
    • 10.1016/S0168-9525(01)02338-1 11418221
    • Blier PU Dufresne F Burton RS Natural selection and the evolution of mtDNA-encoded peptides: Evidence for intergenomic co-adaptation Trends Genet 2001, 17(7):400-406. 10.1016/S0168-9525(01)02338-1 11418221
    • (2001) Trends Genet , vol.17 , Issue.7 , pp. 400-406
    • Blier, P.U.1    Dufresne, F.2    Burton, R.S.3
  • 19
    • 0027058591 scopus 로고
    • Evolution of mitochondrial genomes in fungi
    • 10.1016/S0074-7696(08)62064-1 1452434
    • Clark-Walker GD Evolution of mitochondrial genomes in fungi Int Rev Cytol 1992, 141:89-127. 10.1016/S0074-7696(08)62064-1 1452434
    • (1992) Int Rev Cytol , vol.141 , pp. 89-127
    • Clark-Walker, G.D.1
  • 20
    • 0033738820 scopus 로고    scopus 로고
    • Role Of Mitochondrial DNA in the senescence and hypovirulence of fungi and potential for plant disease control
    • 10.1146/annurev.phyto.38.1.397 11701848
    • Bertrand H ROLE OF MITOCHONDRIAL DNA IN THE SENESCENCE AND HYPOVIRULENCE OF FUNGI AND POTENTIAL FOR PLANT DISEASE CONTROL Annu Rev Phytopathol 2000, 38:397-422. 10.1146/annurev.phyto.38.1.397 11701848
    • (2000) Annu Rev Phytopathol , vol.38 , pp. 397-422
    • Bertrand, H.1
  • 21
    • 0037444274 scopus 로고    scopus 로고
    • Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences
    • 152866 12626702 10.1093/nar/gkg264
    • Bullerwell CE Forget L Lang BF Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences Nucleic Acids Res 2003, 31(6):1614-1623. 152866 12626702 10.1093/nar/gkg264
    • (2003) Nucleic Acids Res , vol.31 , Issue.6 , pp. 1614-1623
    • Bullerwell, C.E.1    Forget, L.2    Lang, B.F.3
  • 22
    • 0030993742 scopus 로고    scopus 로고
    • The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression
    • 10.1007/s002940050220 9162109
    • Paquin B Laforest MJ Forget L Roewer I Wang Z Longcore J Lang BF The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression Curr Genet 1997, 31(5):380-395. 10.1007/s002940050220 9162109
    • (1997) Curr Genet , vol.31 , Issue.5 , pp. 380-395
    • Paquin, B.1    Laforest, M.J.2    Forget, L.3    Roewer, I.4    Wang, Z.5    Longcore, J.6    Lang, B.F.7
  • 23
    • 34547752441 scopus 로고    scopus 로고
    • TrED: The Trichophyton rubrum Expression Database
    • 1940010 17650345 10.1186/1471-2164-8-250
    • Yang J Chen L Wang L Zhang W Liu T Jin Q TrED: The Trichophyton rubrum Expression Database BMC Genomics 2007, 8:250. 1940010 17650345 10.1186/ 1471-2164-8-250
    • (2007) BMC Genomics , vol.8 , pp. 250
    • Yang, J.1    Chen, L.2    Wang, L.3    Zhang, W.4    Liu, T.5    Jin, Q.6
  • 24
    • 0035156156 scopus 로고    scopus 로고
    • Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans
    • 94952 11208783 10.1128/JB.183.3.865-872.2001
    • Anderson JB Wickens C Khan M Cowen LE Federspiel N Jones T Kohn LM Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans J Bacteriol 2001, 183(3):865-872. 94952 11208783 10.1128/JB.183.3.865-872.2001
    • (2001) J Bacteriol , vol.183 , Issue.3 , pp. 865-872
    • Anderson, J.B.1    Wickens, C.2    Khan, M.3    Cowen, L.E.4    Federspiel, N.5    Jones, T.6    Kohn, L.M.7
  • 25
    • 33646754054 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the entomopathogenic fungus Metarhizium anisopliae var. anisopliae: Gene order and trn gene clusters reveal a common evolutionary course for all Sordariomycetes, while intergenic regions show variation
    • 10.1007/s00203-006-0104-x 16552580
    • Ghikas DV Kouvelis VN Typas MA The complete mitochondrial genome of the entomopathogenic fungus Metarhizium anisopliae var. anisopliae: Gene order and trn gene clusters reveal a common evolutionary course for all Sordariomycetes, while intergenic regions show variation Arch Microbiol 2006, 185(5):393-401. 10.1007/s00203-006-0104-x 16552580
    • (2006) Arch Microbiol , vol.185 , Issue.5 , pp. 393-401
    • Ghikas, D.V.1    Kouvelis, V.N.2    Typas, M.A.3
  • 26
    • 4444293373 scopus 로고    scopus 로고
    • The analysis of the complete mitochondrial genome of Lecanicillium muscarium (synonym Verticillium lecanii) suggests a minimum common gene organization in mtDNAs of Sordariomycetes: Phylogenetic implications
    • 10.1016/j.fgb.2004.07.003 15341915
    • Kouvelis VN Ghikas DV Typas MA The analysis of the complete mitochondrial genome of Lecanicillium muscarium (synonym Verticillium lecanii) suggests a minimum common gene organization in mtDNAs of Sordariomycetes: Phylogenetic implications Fungal Genet Biol 2004, 41(10):930-940. 10.1016/j.fgb.2004.07.003 15341915
    • (2004) Fungal Genet Biol , vol.41 , Issue.10 , pp. 930-940
    • Kouvelis, V.N.1    Ghikas, D.V.2    Typas, M.A.3
  • 27
    • 46149105882 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Fusarium oxysporum: Insights into fungal mitochondrial evolution
    • 10.1016/j.gene.2008.04.009 18538510
    • Pantou MP Kouvelis VN Typas MA The complete mitochondrial genome of Fusarium oxysporum: Insights into fungal mitochondrial evolution Gene 2008, 419(1-2):7-15. 10.1016/j.gene.2008.04.009 18538510
    • (2008) Gene , vol.419 , Issue.1-2 , pp. 7-15
    • Pantou, M.P.1    Kouvelis, V.N.2    Typas, M.A.3
  • 28
    • 0037202381 scopus 로고    scopus 로고
    • Molecular strategies in Metazoan genomic evolution
    • 10.1016/S0378-1119(02)01036-3 12468101
    • Saccone C Barome PO D'Erchia AM D'Errico I Pesole G Sbisa E Tullo A Molecular strategies in Metazoan genomic evolution Gene 2002, 300(1-2):195-201. 10.1016/S0378-1119(02)01036-3 12468101
    • (2002) Gene , vol.300 , Issue.1-2 , pp. 195-201
    • Saccone, C.1    Barome, P.O.2    D'Erchia, A.M.3    D'Errico, I.4    Pesole, G.5    Sbisa, E.6    Tullo, A.7
  • 29
    • 0037723901 scopus 로고    scopus 로고
    • Reverse transcriptase and reverse splicing activities encoded by the mobile group II intron cobI1 of fission yeast mitochondrial DNA
    • 10.1016/S0022-2836(03)00441-8 12758069
    • Schafer B Gan L Perlman PS Reverse transcriptase and reverse splicing activities encoded by the mobile group II intron cobI1 of fission yeast mitochondrial DNA J Mol Biol 2003, 329(2):191-206. 10.1016/ S0022-2836(03)00441-8 12758069
    • (2003) J Mol Biol , vol.329 , Issue.2 , pp. 191-206
    • Schafer, B.1    Gan, L.2    Perlman, P.S.3
  • 30
    • 0021921321 scopus 로고
    • RNA processing in Neurospora crassa mitochondria: Use of transfer RNA sequences as signals
    • 554169 2990893
    • Breitenberger CA Browning KS Alzner-DeWeerd B RajBhandary UL RNA processing in Neurospora crassa mitochondria: Use of transfer RNA sequences as signals EMBO J 1985, 4(1):185-195. 554169 2990893
    • (1985) EMBO J , vol.4 , Issue.1 , pp. 185-195
    • Breitenberger, C.A.1    Browning, K.S.2    Alzner-DeWeerd, B.3    RajBhandary, U.L.4
  • 31
    • 34250704167 scopus 로고    scopus 로고
    • The mechanisms of codon reassignments in mitochondrial genetic codes
    • 1894752 17541678 10.1007/s00239-006-0284-7
    • Sengupta S Yang X Higgs PG The mechanisms of codon reassignments in mitochondrial genetic codes J Mol Evol 2007, 64(6):662-688. 1894752 17541678 10.1007/s00239-006-0284-7
    • (2007) J Mol Evol , vol.64 , Issue.6 , pp. 662-688
    • Sengupta, S.1    Yang, X.2    Higgs, P.G.3
  • 32
    • 50849088978 scopus 로고    scopus 로고
    • Evolutionary convergence on highly-conserved 3′ intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome
    • 2483917 18688272 10.1371/journal.pgen.1000148
    • Irimia M Roy SW Evolutionary convergence on highly-conserved 3′ intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome PLoS Genet 2008, 4(8):e1000148. 2483917 18688272 10.1371/journal.pgen.1000148
    • (2008) PLoS Genet , vol.4 , Issue.8
    • Irimia, M.1    Roy, S.W.2
  • 33
    • 0344142347 scopus 로고    scopus 로고
    • Organisation of the mitochondrial genome of Trichophyton rubrumIII DNA sequence analysis of the NADH dehydrogenase subunites 1,2,3,4,5 and the cytochrome b gene
    • 10.1007/s002940050429 10022946
    • Bievre Cd Dujon B Organisation of the mitochondrial genome of Trichophyton rubrumIII DNA sequence analysis of the NADH dehydrogenase subunites 1,2,3,4,5 and the cytochrome b gene Curr Genet 1999, 35:30-35. 10.1007/s002940050429 10022946
    • (1999) Curr Genet , vol.35 , pp. 30-35
    • Bievre, Cd.1    Dujon, B.2
  • 34
    • 0141706951 scopus 로고    scopus 로고
    • The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi
    • 10.1017/S0953756203008128 14531615
    • Tehler A Little DP Farris JS The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi Mycol Res 2003, 107(Pt 8):901-916. 10.1017/S0953756203008128 14531615
    • (2003) Mycol Res , vol.107 , Issue.PART 8 , pp. 901-916
    • Tehler, A.1    Little, D.P.2    Farris, J.S.3
  • 35
    • 0034511264 scopus 로고    scopus 로고
    • Ribosomal DNA and resolution of branching order among the ascomycota: How many nucleotides are enough?
    • 10.1006/mpev.2000.0835 11133188
    • Berbee ML Carmean DA Winka K Ribosomal DNA and resolution of branching order among the ascomycota: How many nucleotides are enough? Mol Phylogenet Evol 2000, 17(3):337-344. 10.1006/mpev.2000.0835 11133188
    • (2000) Mol Phylogenet Evol , vol.17 , Issue.3 , pp. 337-344
    • Berbee, M.L.1    Carmean, D.A.2    Winka, K.3
  • 36
    • 0030023139 scopus 로고    scopus 로고
    • Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data
    • 8742635
    • Berbee ML Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data Mol Biol Evol 1996, 13(3):462-470. 8742635
    • (1996) Mol Biol Evol , vol.13 , Issue.3 , pp. 462-470
    • Berbee, M.L.1
  • 37
    • 3843090640 scopus 로고    scopus 로고
    • Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory
    • 10.1016/j.ympev.2004.04.012 15288074
    • Reeb V Lutzoni F Roux C Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory Mol Phylogenet Evol 2004, 32(3):1036-1060. 10.1016/j.ympev.2004.04.012 15288074
    • (2004) Mol Phylogenet Evol , vol.32 , Issue.3 , pp. 1036-1060
    • Reeb, V.1    Lutzoni, F.2    Roux, C.3
  • 38
    • 0034621871 scopus 로고    scopus 로고
    • Parabasalian flagellates are ancient eukaryotes
    • 10.1038/35015167 10864312
    • Keeling PJ Palmer JD Parabasalian flagellates are ancient eukaryotes Nature 2000, 405(6787):635-637. 10.1038/35015167 10864312
    • (2000) Nature , vol.405 , Issue.6787 , pp. 635-637
    • Keeling, P.J.1    Palmer, J.D.2
  • 40
    • 0344867900 scopus 로고    scopus 로고
    • Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region
    • 10361266
    • Graser Y El Fari M Vilgalys R Kuijpers AF De Hoog GS Presber W Tietz H Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region Med Mycol 1999, 37(2):105-114. 10361266
    • (1999) Med Mycol , vol.37 , Issue.2 , pp. 105-114
    • Graser, Y.1    El Fari, M.2    Vilgalys, R.3    Kuijpers, A.F.4    De Hoog, G.S.5    Presber, W.6    Tietz, H.7
  • 41
    • 55149114876 scopus 로고    scopus 로고
    • The new species concept in dermatophytes-a polyphasic approach
    • 10.1007/s11046-008-9099-y 18478366
    • Graser Y Scott J Summerbell R The new species concept in dermatophytes-a polyphasic approach Mycopathologia 2008, 166(5-6):239-256. 10.1007/ s11046-008-9099-y 18478366
    • (2008) Mycopathologia , vol.166 , Issue.5-6 , pp. 239-256
    • Graser, Y.1    Scott, J.2    Summerbell, R.3
  • 42
    • 40349086064 scopus 로고    scopus 로고
    • Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b
    • 10.1111/j.1574-6968.2008.01077.x 18318841
    • Juhasz A Pfeiffer I Keszthelyi A Kucsera J Vagvolgyi C Hamari Z Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b FEMS Microbiol Lett 2008, 281(1):51-57. 10.1111/ j.1574-6968.2008.01077.x 18318841
    • (2008) FEMS Microbiol Lett , vol.281 , Issue.1 , pp. 51-57
    • Juhasz, A.1    Pfeiffer, I.2    Keszthelyi, A.3    Kucsera, J.4    Vagvolgyi, C.5    Hamari, Z.6
  • 43
    • 0346996715 scopus 로고    scopus 로고
    • The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts
    • 10.1016/S0014-5793(03)01307-3 14675758
    • Woo PC Zhen H Cai JJ Yu J Lau SK Wang J Teng JL Wong SS Tse RH Chen R et al The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts FEBS Lett 2003, 555(3):469-477. 10.1016/S0014-5793(03)01307-3 14675758
    • (2003) FEBS Lett , vol.555 , Issue.3 , pp. 469-477
    • Woo, P.C.1    Zhen, H.2    Cai, J.J.3    Yu, J.4    Lau, S.K.5    Wang, J.6    Teng, J.L.7    Wong, S.S.8    Tse, R.H.9    Chen, R.10
  • 44
    • 0033578062 scopus 로고    scopus 로고
    • The oldest fossil ascomycetes
    • 10.1038/21349 10385115
    • Taylor TN Hass H Kerp H The oldest fossil ascomycetes Nature 1999, 399(6737):648. 10.1038/21349 10385115
    • (1999) Nature , vol.399 , Issue.6737 , pp. 648
    • Taylor, T.N.1    Hass, H.2    Kerp, H.3
  • 45
    • 84907127786 scopus 로고
    • Phylogeny and dating of some pathogenic keratinophilic fungi using small subunit ribosomal RNA
    • 10.1080/02681219580000611 8544082
    • Harmsen D Schwinn A Weig M Brocker EB Heesemann J Phylogeny and dating of some pathogenic keratinophilic fungi using small subunit ribosomal RNA J Med Vet Mycol 1995, 33(5):299-303. 10.1080/02681219580000611 8544082
    • (1995) J Med Vet Mycol , vol.33 , Issue.5 , pp. 299-303
    • Harmsen, D.1    Schwinn, A.2    Weig, M.3    Brocker, E.B.4    Heesemann, J.5
  • 46
    • 2942568227 scopus 로고    scopus 로고
    • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    • 341452 15005799 10.1186/1471-2148-4-2
    • Hedges SB Blair JE Venturi ML Shoe JL A molecular timescale of eukaryote evolution and the rise of complex multicellular life BMC Evol Biol 2004, 4:2. 341452 15005799 10.1186/1471-2148-4-2
    • (2004) BMC Evol Biol , vol.4 , pp. 2
    • Hedges, S.B.1    Blair, J.E.2    Venturi, M.L.3    Shoe, J.L.4
  • 47
    • 48949100397 scopus 로고    scopus 로고
    • Generating and testing molecular hypotheses in the dermatophytes
    • 2519771 18539886 10.1128/EC.00100-08
    • White TC Oliver BG Graser Y Henn MR Generating and testing molecular hypotheses in the dermatophytes Eukaryot Cell 2008, 7(8):1238-1245. 2519771 18539886 10.1128/EC.00100-08
    • (2008) Eukaryot Cell , vol.7 , Issue.8 , pp. 1238-1245
    • White, T.C.1    Oliver, B.G.2    Graser, Y.3    Henn, M.R.4
  • 48
    • 0344867900 scopus 로고    scopus 로고
    • Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region
    • 10.1080/02681219980000171 10361266
    • Graer Y Fari ME Vilgalys R Kuijpers AFA Hoog GSD Presber W Tietz H-J Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region Medical Mycology 1999, 37:105-114. 10.1080/02681219980000171 10361266
    • (1999) Medical Mycology , vol.37 , pp. 105-114
    • Graer, Y.1    Fari, M.E.2    Vilgalys, R.3    Kuijpers, A.F.A.4    Hoog, G.S.D.5    Presber, W.6    Tietz, H.-J.7
  • 49
    • 84907132179 scopus 로고
    • Phylogeny of dermatophytes and dimorphic fungi based on large subunit ribosomal RNA sequence comparisons
    • 10.1080/02681219480000451 7844699
    • Leclerc MC Philippe H Gueho E Phylogeny of dermatophytes and dimorphic fungi based on large subunit ribosomal RNA sequence comparisons J Med Vet Mycol 1994, 32(5):331-341. 10.1080/02681219480000451 7844699
    • (1994) J Med Vet Mycol , vol.32 , Issue.5 , pp. 331-341
    • Leclerc, M.C.1    Philippe, H.2    Gueho, E.3
  • 50
    • 0032728575 scopus 로고    scopus 로고
    • rRNA gene internal transcribed spacer 1 and 2 sequences of asexual, anthropophilic dermatophytes related to Trichophyton rubrum
    • 85867 10565922
    • Summerbell RC Haugland RA Li A Gupta AK rRNA gene internal transcribed spacer 1 and 2 sequences of asexual, anthropophilic dermatophytes related to Trichophyton rubrum J Clin Microbiol 1999, 37(12):4005-4011. 85867 10565922
    • (1999) J Clin Microbiol , vol.37 , Issue.12 , pp. 4005-4011
    • Summerbell, R.C.1    Haugland, R.A.2    Li, A.3    Gupta, A.K.4
  • 51
    • 0032999884 scopus 로고    scopus 로고
    • Phylogenetic classification and species identification of dermatophyte strains based on DNA sequences of nuclear ribosomal internal transcribed spacer 1 regions
    • 88625 10074502
    • Makimura K Tamura Y Mochizuki T Hasegawa A Tajiri Y Hanazawa R Uchida K Saito H Yamaguchi H Phylogenetic classification and species identification of dermatophyte strains based on DNA sequences of nuclear ribosomal internal transcribed spacer 1 regions J Clin Microbiol 1999, 37(4):920-924. 88625 10074502
    • (1999) J Clin Microbiol , vol.37 , Issue.4 , pp. 920-924
    • Makimura, K.1    Tamura, Y.2    Mochizuki, T.3    Hasegawa, A.4    Tajiri, Y.5    Hanazawa, R.6    Uchida, K.7    Saito, H.8    Yamaguchi, H.9
  • 52
    • 0037738612 scopus 로고    scopus 로고
    • Molecular taxonomy of dermatophytes and related fungi by chitin synthase 1 (CHS1) gene sequences
    • 10.1023/A:1022928811306 12755475
    • Hirai A Kano R Nakamura Y Watanabe S Hasegawa A Molecular taxonomy of dermatophytes and related fungi by chitin synthase 1 (CHS1) gene sequences Antonie Van Leeuwenhoek 2003, 83(1):11-20. 10.1023/ A:1022928811306 12755475
    • (2003) Antonie Van Leeuwenhoek , vol.83 , Issue.1 , pp. 11-20
    • Hirai, A.1    Kano, R.2    Nakamura, Y.3    Watanabe, S.4    Hasegawa, A.5
  • 53
    • 0036408961 scopus 로고    scopus 로고
    • Chitin synthase 1 gene of Arthroderma benhamiae isolates in Japan
    • 10.1046/j.1439-0507.2002.00768.x 12572715
    • Kano R Hirai A Hasegawa A Chitin synthase 1 gene of Arthroderma benhamiae isolates in Japan Mycoses 2002, 45(8):277-281. 10.1046/ j.1439-0507.2002.00768.x 12572715
    • (2002) Mycoses , vol.45 , Issue.8 , pp. 277-281
    • Kano, R.1    Hirai, A.2    Hasegawa, A.3
  • 54
    • 0033511492 scopus 로고    scopus 로고
    • Phylogenetic relation of Epidermophyton floccosum to the species of Microsporum and Trichophyton in chitin synthase 1 (CHS1) gene sequences
    • 10.1023/A:1007091031124 10823181
    • Kano R Nakamura Y Watanabe S Tsujimoto H Hasegawa A Phylogenetic relation of Epidermophyton floccosum to the species of Microsporum and Trichophyton in chitin synthase 1 (CHS1) gene sequences Mycopathologia 1999, 146(3):111-113. 10.1023/A:1007091031124 10823181
    • (1999) Mycopathologia , vol.146 , Issue.3 , pp. 111-113
    • Kano, R.1    Nakamura, Y.2    Watanabe, S.3    Tsujimoto, H.4    Hasegawa, A.5
  • 55
    • 0037486867 scopus 로고    scopus 로고
    • PCR-based identification of common dermatophyte species using primer sets specific for the DNA topoisomerase II genes
    • 10.1016/S0923-1811(03)00048-3 12850308
    • Kanbe T Suzuki Y Kamiya A Mochizuki T Fujihiro M Kikuchi A PCR-based identification of common dermatophyte species using primer sets specific for the DNA topoisomerase II genes J Dermatol Sci 2003, 32(2):151-161. 10.1016/S0923-1811(03)00048-3 12850308
    • (2003) J Dermatol Sci , vol.32 , Issue.2 , pp. 151-161
    • Kanbe, T.1    Suzuki, Y.2    Kamiya, A.3    Mochizuki, T.4    Fujihiro, M.5    Kikuchi, A.6
  • 56
    • 18544381275 scopus 로고    scopus 로고
    • Repetitive-sequence-PCR-based DNA fingerprinting using the Diversilab system for identification of commonly encountered dermatophytes
    • 1153804 15872233 10.1128/JCM.43.5.2141-2147.2005
    • Pounder JI Williams S Hansen D Healy M Reece K Woods GL Repetitive-sequence-PCR-based DNA fingerprinting using the Diversilab system for identification of commonly encountered dermatophytes J Clin Microbiol 2005, 43(5):2141-2147. 1153804 15872233 10.1128/ JCM.43.5.2141-2147.2005
    • (2005) J Clin Microbiol , vol.43 , Issue.5 , pp. 2141-2147
    • Pounder, J.I.1    Williams, S.2    Hansen, D.3    Healy, M.4    Reece, K.5    Woods, G.L.6
  • 57
    • 0141646519 scopus 로고    scopus 로고
    • Species-identification of dermatophytes Trichophyton, Microsporum and Epidermophyton by PCR and PCR-RFLP targeting of the DNA topoisomerase II genes
    • 10.1016/S0923-1811(03)00150-6 14527738
    • Kanbe T Suzuki Y Kamiya A Mochizuki T Kawasaki M Fujihiro M Kikuchi A Species-identification of dermatophytes Trichophyton, Microsporum and Epidermophyton by PCR and PCR-RFLP targeting of the DNA topoisomerase II genes J Dermatol Sci 2003, 33(1):41-54. 10.1016/S0923-1811(03)00150-6 14527738
    • (2003) J Dermatol Sci , vol.33 , Issue.1 , pp. 41-54
    • Kanbe, T.1    Suzuki, Y.2    Kamiya, A.3    Mochizuki, T.4    Kawasaki, M.5    Fujihiro, M.6    Kikuchi, A.7
  • 58
    • 0033792160 scopus 로고    scopus 로고
    • Molecular approaches to the study of dermatophytes
    • 10.1080/714030966 11092379
    • Kac G Molecular approaches to the study of dermatophytes Med Mycol 2000, 38(5):329-336. 10.1080/714030966 11092379
    • (2000) Med Mycol , vol.38 , Issue.5 , pp. 329-336
    • Kac, G.1
  • 59
    • 47049100435 scopus 로고    scopus 로고
    • Proteomic profile of dormant Trichophyton rubrum conidia
    • 2443143 18578874 10.1186/1471-2164-9-303
    • Leng W Liu T Li R Yang J Wei C Zhang W Jin Q Proteomic profile of dormant Trichophyton rubrum conidia BMC Genomics 2008, 9:303. 2443143 18578874 10.1186/1471-2164-9-303
    • (2008) BMC Genomics , vol.9 , pp. 303
    • Leng, W.1    Liu, T.2    Li, R.3    Yang, J.4    Wei, C.5    Zhang, W.6    Jin, Q.7
  • 60
    • 0028881309 scopus 로고
    • Organisation of the mitochondrial genmone of Trichophyton rubrum DNA sequence analysis of the ND4 gene, the ATPase subunit-6gene, the ribosomal RNA small-subunit gene, the ND6gene, the cox3gene, the ATPase subunit-8 gene and six tRNA genes that correspond respective to the tyrosine, lysine, glutamine, asparagine, isoleucine and trytophab acceptors
    • 10.1007/BF00518168 8593686
    • Bievre Cd Dujon B Organisation of the mitochondrial genmone of Trichophyton rubrum DNA sequence analysis of the ND4 gene, the ATPase subunit-6gene, the ribosomal RNA small-subunit gene, the ND6gene, the cox3gene, the ATPase subunit-8 gene and six tRNA genes that correspond respective to the tyrosine, lysine, glutamine, asparagine, isoleucine and trytophab acceptors Curr Genet 1995, 28:553-559. 10.1007/BF00518168 8593686
    • (1995) Curr Genet , vol.28 , pp. 553-559
    • Bievre, Cd.1    Dujon, B.2
  • 61
    • 0026787093 scopus 로고
    • Mitochondrial DNA sequence analysis of the cytochrome oxidase subunit I and II genes, the ATPase9gene, the NADH dehydrogenase ND4L and ND5 gene complex, and the glutaminy1, methiony1 and arginy1 tRNA genes from Trichophyton rubrum
    • 10.1007/BF00351730 1326416
    • Bievre Cd Dujon B Mitochondrial DNA sequence analysis of the cytochrome oxidase subunit I and II genes, the ATPase9gene, the NADH dehydrogenase ND4L and ND5 gene complex, and the glutaminy1, methiony1 and arginy1 tRNA genes from Trichophyton rubrum Curr Genet 1992, 22:229-234. 10.1007/ BF00351730 1326416
    • (1992) Curr Genet , vol.22 , pp. 229-234
    • Bievre, Cd.1    Dujon, B.2
  • 62
    • 0028881309 scopus 로고
    • Organisation of the mitochondrial genmone of Trichophyton rubrum DNA sequence analysis of the ND4 gene, the ATPase subunit-6gene, the ribosomal RNA small-subunit gene, the ND6gene, the cox3gene, the ATPase subunit-8 gene and six tRNA genes that correspond respective to the tyrosine, lysine, glutamine, asparagine, isoleucine and trytophab acceptors
    • 10.1007/BF00518168 8593686
    • Cd B Dujon B Organisation of the mitochondrial genmone of Trichophyton rubrum DNA sequence analysis of the ND4 gene, the ATPase subunit-6gene, the ribosomal RNA small-subunit gene, the ND6gene, the cox3gene, the ATPase subunit-8 gene and six tRNA genes that correspond respective to the tyrosine, lysine, glutamine, asparagine, isoleucine and trytophab acceptors Curr Genet 1995, 28:553-559. 10.1007/BF00518168 8593686
    • (1995) Curr Genet , vol.28 , pp. 553-559
    • Cd, B.1    Dujon, B.2
  • 63
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • 9521922
    • Ewing B Green P Base-calling of automated sequencer traces using phred. II. Error probabilities Genome Res 1998, 8(3):186-194. 9521922
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 64
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 146917 9254694 10.1093/nar/25.17.3389
    • Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25(17):3389-3402. 146917 9254694 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 65
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • 146525 9023104 10.1093/nar/25.5.955
    • Lowe TM Eddy SR tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res 1997, 25(5):955-964. 146525 9023104 10.1093/nar/25.5.955
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 66
    • 0038798562 scopus 로고    scopus 로고
    • GenomeComp: A visualization tool for microbial genome comparison
    • 10.1016/S0167-7012(03)00094-0 12842490
    • Yang J Wang J Yao ZJ Jin Q Shen Y Chen R GenomeComp: A visualization tool for microbial genome comparison J Microbiol Methods 2003, 54(3):423-426. 10.1016/S0167-7012(03)00094-0 12842490
    • (2003) J Microbiol Methods , vol.54 , Issue.3 , pp. 423-426
    • Yang, J.1    Wang, J.2    Yao, Z.J.3    Jin, Q.4    Shen, Y.5    Chen, R.6
  • 67
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517 7984417 10.1093/nar/22.22.4673
    • Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22(22):4673-4680. 308517 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 68
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • 10.1093/bioinformatics/bti320 15713735
    • Pond SL Frost SD Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments Bioinformatics 2005, 21(10):2531-2533. 10.1093/bioinformatics/bti320 15713735
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2531-2533
    • Pond, S.L.1    Frost, S.D.2
  • 69
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • 10.1093/bioinformatics/18.3.502 11934758
    • Schmidt HA Strimmer K Vingron M von Haeseler A TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing Bioinformatics 2002, 18(3):502-504. 10.1093/bioinformatics/18.3.502 11934758
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 70
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • 10.1093/bioinformatics/bti263 15647292
    • Abascal F Zardoya R Posada D ProtTest: Selection of best-fit models of protein evolution Bioinformatics 2005, 21(9):2104-2105. 10.1093/ bioinformatics/bti263 15647292
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 71
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092 17488738
    • Tamura K Dudley J Nei M Kumar S MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092 17488738
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4


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