Erratum: Global nutritional profiling for mutant and chemical mode-of-action analysis in filamentous fungi (Functional and Integrative Genomics (2003) vol. 3 (160-170) 10.1007/s10142-003-0089-3;Global nutritional profiling for mutant and chemical mode-of-action analysis in filamentous fungi

Functional and Integrative Genomics

Volumn 3, Issue 4, 2003, Pages 160-170

  Tanzer, Matthew M ^a   Arst Jr , Herbert N ^b   Skalchunes, Amy R ^a   Coffin, Marie ^a   Darveaux, Blaise A ^c   Heiniger, Ryan W ^a   Shuster, Jeffrey R ^a  

^a Clinical Data Inc   (United States)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

^c Mycosynthetix Inc   (United States)

Author keywords

Filamentous fungi; Functional genomics; Nutritional profiling; Phenotype Microarray

Indexed keywords

CARBON; ENZYME INHIBITOR; NITROGEN; AMINOBUTYRIC ACID DERIVATIVE; FUNGAL PROTEIN; GLUTAMATE AMMONIA LIGASE; PHOSPHINOTHRICIN;

ACCURACY; ARTICLE; ASPERGILLUS NIDULANS; CATABOLITE REPRESSION; CHEMICAL ANALYSIS; COMPARATIVE STUDY; CULTURE OPTIMIZATION; FUNCTIONAL GENOMICS; FUNGAL STRAIN; FUNGUS GROWTH; FUNGUS MUTANT; GENE FUNCTION; GENE MUTATION; GENE SEQUENCE; GENOME ANALYSIS; HIGH THROUGHPUT SCREENING; METHODOLOGY; MICROTITER PLATE ASSAY; NONHUMAN; NUTRIGENOMICS; NUTRITION; OPTICAL DENSITY; PHENOTYPIC VARIATION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; SEQUENCE ANALYSIS; SPECIES COMPARISON; CHEMISTRY; CULTURE MEDIUM; DNA MICROARRAY; DOSE RESPONSE; DRUG ANTAGONISM; ENZYME SPECIFICITY; FUNGAL GENE; FUNGUS; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; KINETICS; METABOLISM; MUTATION; PATHOGENICITY; REPRODUCIBILITY; SPECIES DIFFERENCE;

AMINOBUTYRIC ACIDS; ASPERGILLUS NIDULANS; CARBON; CULTURE MEDIA; DOSE-RESPONSE RELATIONSHIP, DRUG; ENZYME INHIBITORS; FUNGAL PROTEINS; FUNGI; GENE EXPRESSION PROFILING; GENES, FUNGAL; GLUTAMATE-AMMONIA LIGASE; KINETICS; MUTATION; NITROGEN; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; SPECIES SPECIFICITY; SUBSTRATE SPECIFICITY;

EID: 3843073364     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-004-0108-z     Document Type: Erratum

References (42)

1. Al Taho NM, Sealy-Lewis HM, Scazzocchio C (1984) Suppressible alleles in a wide domain regulatory gene in Aspergillus nidulans. Curr Genet 8:245-251
2. Arst HN Jr, Cove DJ (1973) Nitrogen metabolite repression in Aspergillus nidulans. Mol Gen Genet 126:111-141
3. Arst HN Jr, Scazzocchio C (1975) Initiator constitutive mutation with an "up-promoter" effect in Aspergillus nidulans. Nature 254:31-34 1:CAS:528:DyaE2MXkt1Cqtro%3D
4. Avalos J, Geever RF, Case ME (1989). Bialaphos resistance as a dominant selectable marker in Neurospora crassa. Curr Genet 16:369-372 1:CAS:528:DyaK3cXhtFGmtL0%3D
5. Bailey C, Arst HN Jr (1975) Carbon catabolite repression in Aspergillus nidulans. Eur J Biochem 51:573-577 1:CAS:528:DyaE2MXht1Wmt70%3D
6. Berman J, Sudbery PE (2002) Candida albicans: A molecular revolution built on lessons from budding yeast. Nature Rev Genet 3:918-930 10.1038/ nrg948
7. Bochner BR, Gadzinski P, Panomitros E (2001) Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. Genome Res 11:1246-1255 10.1101/gr.186501
8. Caddick MX, Arst HN Jr (1990) Nitrogen regulation in Aspergillus: Are two fingers better than one? Gene 95:123-127 10.1016/0378-1119(90)90422-N
9. Caddick MX, Arst HN Jr (1998) Deletion of the 389 N-terminal residues of the transcriptional activator AREA does not result in nitrogen metabolite derepression in Aspergillus nidulans. J Bacteriol 180:5762-5764 1:CAS:528:DyaK1cXnt1agt7Y%3D
10. Chaveroche MK, Ghigo JM, d'Enfert C (2000) A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans. Nucleic Acids Res 28:E97 1:STN:280:DC%2BD3M%2FktFWhsQ%3D%3D
11. Crawford MS, Chumley FG, Weaver CG, Valent B (1986) Characterization of the heterokaryotic and vegetative diploid phases of Magnaporthe grisea. Genetics 114:1111-1129
12. Cubero B, Scazzocchio C (1994) Two different, adjacent and divergent zinc finger binding sites are necessary for CREA-mediated carbon catabolite repression in the proline gene cluster of Aspergillus nidulans. EMBO J 13:407-415 1:CAS:528:DyaK2cXhvVCmu7Y%3D
13. Darlington AJ, Scazzocchio C (1967) Use of analogues and the substrate-sensitivity of mutants in the analysis of purine uptake and breakdown in Aspergillus nidulans. J Bacteriol 93:937-940 1:CAS:528:DyaF2sXotlektQ%3D%3D
14. Dowzer CEA, Kelly JM (1991) Analysis of the creA gene, a regulator of carbon catabolite repression. Mol Cell Biol 11:5701-5709 1:CAS:528:DyaK38Xmt1ylsro%3D
15. Dunn-Coleman NS, Tomsett AB, Garrett RH (1979) Nitrogen metabolite repression of nitrate reductase in Neurospora crassa: Effect of the gln-1a locus. J Bacteriol 139:697-700 1:CAS:528:DyaE1MXltlKruro%3D
16. Felenbok B, Flipphi M, Nikolaev I (2001) Ethanol catabolism in Aspergillus nidulans: A model system for studying gene regulation. Prog Nucleic Acid Res Mol Biol 69:149-204 1:CAS:528:DC%2BD3MXntFGlurw%3D
17. Fiehn O (2002) Metabolomics - the link between genotypes and phenotypes. Plant Mol Biol 48:155-171 11860207
18. Froeliger EH, Carpenter BE (1996) NUT1, a major nitrogen regulatory gene in Magnaporthe grisea, is dispensable for pathogenicity. Mol Gen Genet 251:647-656 10.1007/s004380050213
19. Hamer L, Adachi K, Montenegro-Chamorro MV, Tanzer MM, Mahanty SK, Darveaux BA, Lampe DJ, Slater TM, Ramamurthy L, DeZwaan TM, Nelson GH, Shuster JR, Woessner J, Hamer JE (2001) Gene discovery and gene function assignment in filamentous fungi. Proc Natl Acad Sci USA 98:5110-5115 10.1073/pnas.091094198
20. Hynes MJ (1975) Studies on the role of the areA gene in the regulation of nitrogen catabolism in Aspergillus nidulans. Aust J Biol Sci 28:301-313 1:CAS:528:DyaE2MXksVSjurg%3D
21. Hynes MJ, Kelly JM (1977) Pleiotropic mutants of Aspergillus nidulans altered in carbon metabolism. Mol Gen Genet 150:193-204 1:CAS:528:DyaE2sXos1ShtA%3D%3D
22. Hynes MJ, Pateman JAJ (1970) The genetic analysis of regulation of amidase synthesis in Aspergillus nidulans. I. Mutants able to utilize acrylamide. Mol Gen Genet 108:97-106 1:CAS:528:DyaE3MXjvFKnsw%3D%3D
23. Kema GHJ, Annone JG (1991) In vitro production of pycnidia by Septoria tritici. Neth J Plant Pathol 97:65-72
24. Kudla B, Caddick MX, Langdon T, Martinez-Rossi NM, Bennett CF, Sibley S, Davies RW, Arst HN Jr (1990) The regulatory gene areA mediating nitrogen metabolite repression in Aspergillus idulans. Mutations affecting specificity of gene activation alter a loop residue of a putative zinc finger. EMBO J 9:1355-1364 1:CAS:528:DyaK3cXls1KnsL8%3D
25. Kutlesa NJ, Caveney S (2001) Insecticidal activity of glufosinate through glutamine depletion in a caterpillar. Pest Manage Sci 57:25-32 10.1002/1526-4998(200101)57:1<25::AID-PS272>3.0.CO;2-I
26. Langdon T, Sheerins A, Ravagnani A, Gielkens M, Caddick MX, Arst HN Jr (1995) Mutational analysis reveals dispensability of the N-terminal region of the Aspergillus transcription factor mediating nitrogen metabolite repression. Mol Microbiol 17:877-888 1:CAS:528:DyaK2MXovVGrsbg%3D
27. Leung H, Borromeo ES, Bernardo MA, Notteghem JL (1988) Genetic analysis of virulence in the rice blast fungus Magnaporthe grisea. Phytopathology 78:1227-1233
28. Mathieu M, Felenbok B (1994) The Aspergillus nidulans CREA protein mediates glucose repression of the ethanol regulon at various levels through a competition with the ALCR specific transactivator. EMBO J 13:4022-4027 1:CAS:528:DyaK2cXmsVOqtLY%3D
29. Megnet R (1967) Mutants partially deficient in alcohol dehydrogenase in Schizosaccharomyces pombe. Arch Biochem Biophys 121:194-201 1:CAS:528:DyaF2sXksFWgu7k%3D
30. Pall ML (1993) The use of Ignite (Basta; glufosinate; phosphinothricin) to select transformants of bar-containing plasmids in Neurospora crassa. Fungi Gen Newsl 40:58
31. Phelps TJ, Palumbo AV, Beliaev AS (2002) Metabolomics and microarrays for improved understanding of phenotypic characteristics controlled by both genomics and environmental constraints. Curr Opin Biotechnol 13:20-24 10.1016/S0958-1669(02)00279-3
32. Platt A, Langdon T, Arst HN Jr, Kirk D, Tollervey D, Mates Sanchez JM, Caddick MX (1996) Nitrogen metabolite signalling involves the C-terminus and the GATA domain of the Aspergillus transcription factor AREA and the 3′ untranslated region of its mRNA. EMBO J 15:2791-2801 1:CAS:528:DyaK28XjvVWitbk%3D
33. Ravagnani A, Gorfinkiel L, Langdon T, Diallinas G, Adjadj E, Demais S, Gorton D, Arst HN Jr, Scazzocchio C (1997) Subtle hydrophobic interactions between the seventh residue of the zinc finger loop and the first base of an HGATAR sequence determine promoter-specific recognition by the Aspergillus nidulans GATA factor AreA. EMBO J 16:3974-3986 1:CAS:528:DyaK2sXkslSnsr0%3D
34. Rieger K, El-Alama M, Stein G, Bradshaw C, Slonimski PP, Maundrell K (1999) Chemotyping of yeast mutants using robotics. Yeast 15:973-986 10.1002/(SICI)1097-0061(199907)15:10B<973::AID-YEA402>3.3.CO;2-C
35. Rieger KJ, Kaniak A, Coppee JY, Aljinovic G, Baudin-Baillieu A, Orlowska G, Gromadka R, Groudinsky O, Di Rago JP, Slonimski PP (1997) Large-scale phenotypic analysis-the pilot project on yeast chromosome III. Yeast 13:1547-1562 10.1002/ (SICI)1097-0061(199712)13:16<1547::AID-YEA230>3.3.CO;2-P
36. Ross-Macdonald P (2000) Functional analysis of the yeast genome. Funct Integr Genom 1:99-113 1:CAS:528:DC%2BD3MXlvFOntQ%3D%3D
37. Ross-Macdonald P, Coelho PSR, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung KH, Sheehan A, Symoniatis D, Umansky L, Heidtman M, Nelson FK, Iwasaki H, Hager K, Gerstein M, Miller P, Roeder GS, Snyder M (1999) Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature 402:413-418 1:CAS:528:DyaK1MXnvVyku7c%3D
38. Shroff RA, O'Conner SM, Hynes MJ, Lockington RA, Kelly JM (1997) Null alleles of creA, the regulator of carbon catabolite repression in Aspergillus nidulans. Fungal Genet Biol 22: 28-38 1:CAS:528:DyaK2sXntlGnsLY%3D
39. Stankovich M, Platt A, Caddick MX, Langdon T, Shaffer PM, Arst HN Jr (1993) C-terminal truncation of the transcriptional activator encoded by areA in Aspergillus nidulans results in both loss-of-function and gain-of-function phenotypes. Mol Microbiol 7:81-87 1:CAS:528:DyaK3sXms1eqtLg%3D
40. Sweigard JA, Carroll AM, Valent B (1999) Restriction enzyme-mediated integration in the rice blast fungus. In: Septoria on cereals: A study in pathosystems. IACR 15th international symposium. Long Ashton Research Station, Bristol, pp 192-198
41. Talbot NJ, Ebbole DJ, Hamer JE (1993) Identification and characterization of MPG1, a gene involved in pathogenicity from the rice blast fungus Magnaporthe grisea. Plant Cell 5:1575-1590 10.1105/ tpc.5.11.1575
42. Wilson RA, Arst HN Jr (1998) Mutational analysis of AREA, a transcriptional activator mediating nitrogen metabolite repression in Aspergillus nidulans and a member of the "streetwise" GATA family of transcription factors. Microbiol Mol Biol Rev 62:586-596 1:CAS:528:DyaK1cXmtFOjuro%3D