CLANS: A Java application for visualizing protein families based on pairwise similarity

Bioinformatics

Volumn 20, Issue 18, 2004, Pages 3702-3704

  Frickey, Tancred ^a   Lupas, Andrei ^a  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANALYTICAL ERROR; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; MATHEMATICAL COMPUTING; PHYLOGENY; PLOTS AND CURVES; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

EID: 10044222704     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth444     Document Type: Article

References (7)

1. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Miller,W. and Lipman D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3444.
2. Enright,A.J. and Ouzounis,C.A. (2001) BioLayout-an automatic graph layout algorithm for similarity visualization. Bioinformatics 17, 853-854.
3. Frickey,T. and Lupas,A.N. (2004) Phylogenetic analysis of AAA proteins. J. Struct. Biol., 146, 2-10.
4. Fruchterman,T.M. and Reingold,E.M., (1991) Force directed placement. Softw. Pract. Exp., 21, 1129-1164.
5. Koski,L.B. and Golding,G.B. (2001) The closest BLAST hit is often not the nearest neighbor. J. Mol. Evol., 52, 540-542.
6. International Human Genome Sequenceing Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409 860-921.
7. Stanhope,M.J., Lupas,A.N., Italia,M.J., Koretke,K.K., Volker,C. and Brown,J.R. (2001) Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature, 411, 940-944.