Geographical markers for Saccharomyces cerevisiae strains with similar technological origins domesticated for rice-based ethnic fermented beverages production in North East India

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 100, Issue 4, 2011, Pages 569-578

  Jeyaram, Kumaraswamy ^a   Tamang, Jyoti Prakash ^b   Capece, Angela ^c   Romano, Patrizia ^c  

^a INSTITUTE OF BIORESOURCES AND SUSTAINABLE DEVELOPMENT   (India)

^b SIKKIM UNIVERSITY   (India)

^c UNIVERSITY OF BASILICATA   (Italy)

Author keywords

Domestication; Hamei; Karyotyping; Marcha; mtDNA RFLP

Indexed keywords

MITOCHONDRIAL DNA; MOLECULAR MARKER;

ARTICLE; BEVERAGE; BIOTECHNOLOGICAL PRODUCTION; CHROMOSOME 8; CONTROLLED STUDY; DOMESTIC SPECIES; FERMENTATION TECHNIQUE; FERMENTED PRODUCT; FUNGAL STRAIN; FUNGUS ISOLATION; GENETIC DISTANCE; GEOGRAPHIC ORIGIN; GEOGRAPHICAL VARIATION (SPECIES); INDIA; KARYOTYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE; RNA SEQUENCE; SACCHAROMYCES CEREVISIAE; SPECIES DIFFERENTIATION; SPECIES DIVERSITY;

ETHANOL; FERMENTATION; GENETIC MARKERS; GEOGRAPHY; INDIA; ITALY; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYLOGENY; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SACCHAROMYCES CEREVISIAE; WINE;

SACCHAROMYCES CEREVISIAE;

EID: 80054120966     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9612-z     Document Type: Article

References (46)

1. A Aertsen CW Michiels 2005 Diversity or die: generation of diversity in response to stress Crit Rev Microbiol 31 69 78 15986832 10.1080/ 10408410590921718 (Pubitemid 40756859)
2. P Blanco A Ramilo M Cerdeira I Orriois 2006 Genetic diversity of wine Saccharomyces cerevisiae strains in an experimental winery from Galicia (NW Spain) Antonie van Leeuwenhoek 89 351 357 16779631 10.1007/s10482-005-9038-6 1:CAS:528:DC%2BD28XlvVGrtr0%3D (Pubitemid 43899039)
3. D Carro B Pia 2001 Genetic analysis of the karyotype instability in natural wine yeast strains Yeast 18 1457 1470 11748723 10.1002/yea.789 1:CAS:528:DC%2BD38XmslOntw%3D%3D (Pubitemid 34083126)
4. AC Codón T Benítez M Korhola 1997 Chromosomal reorganization during meiosis of Saccharomyces cerevisiae baker's yeasts Curr Genet 32 247 259 9342404 10.1007/s002940050274 (Pubitemid 27490105)
5. J Diamond 2002 Evolution, consequences and future of plant and animal domestication Nature 418 700 707 12167878 10.1038/nature01019 1:CAS:528:DC%2BD38XlvVyltbY%3D
6. JW Drake 1991 A constant rate of spontaneous mutation in DNA based microbes Proc Natl Acad Sci USA 88 7160 7164 1831267 10.1073/pnas.88.16.7160 1:CAS:528:DyaK3MXlsFais7g%3D (Pubitemid 21915109)
7. B Esteve-Zarzoso P Manzanares D Ramön A Querol 1998 The role of non-Saccharomyces yeasts in industrial winemaking Int Microbiol 1 143 148 10943352 1:STN:280:DC%2BD3cvislWksw%3D%3D (Pubitemid 128731325)
8. OU Ezeronye JL Legras 2009 Genetic analysis of Saccharomyces cerevisiae strains isolated from palm wine in eastern Nigeria, comparison with other African strains J Appl Microbiol 106 1569 1578 19191945 10.1111/j.1365-2672. 2008.04118.x 1:CAS:528:DC%2BD1MXmtVOisrc%3D
9. JC Fay JA Benavides 2005 Evidence for domesticated and wild populations of Saccharomyces cerevisiae PLoS Genet 1 1 e5 10.1371/journal.pgen.0010005
10. MT Fernandez-Espinar B Esteve-zarzoso A Querol E Barrio 2000 RFLP analysis of the internal transcribed spacers and the 5.8S rRNA gene region of the genus Saccharomyces: a fast method for species identification and the differentiation of flour yeasts Antonie van Leeuwenhoek 78 87 97 10.1023/A:1002741800609 1:CAS:528:DC%2BD3cXntFKnsL8%3D
11. MT Fernandez-Espinar V Lopez D Ramon E Bartra A Querol 2001 Study of the authenticity of commercial wine yeast strains by molecular techniques Int J Food Microbiol 70 1 10 11759747 10.1016/S0168-1605(01)00502-5 1:CAS:528: DC%2BD3MXnslers78%3D (Pubitemid 32979211)
12. TM Fernandez-Espinar E Barrio A Querol 2003 Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex Yeast 20 1213 1226 10.1002/yea.1034 1:CAS:528:DC%2BD3sXovVGqtrs%3D (Pubitemid 37383689)
13. G Fischer SA James IN Roberts SG Oliver EJ Louis 2000 Chromosomal evolution in Saccharomyces Nature 405 451 454 10839539 10.1038/35013058 1:CAS:528:DC%2BD3cXjslylt7s%3D (Pubitemid 30367420)
14. L Granchi M Bosco A Messini M Vincenzini 1999 Rapid detection and quantification of yeast species during spontaneous wine fermentation by PCR-RFLP analysis of the rDNA ITS region J Appl Microbiol 87 949 956 10692077 10.1046/j.1365-2672.1999.00600.x 1:CAS:528:DC%2BD3cXpvVKhsg%3D%3D (Pubitemid 30055710)
15. JM Guillamon E Barrio A Querol 1996 Characterization of wine yeast strains of the Saccharomyces genus on the basis of molecular markers: relationships between genetic distance and geographic or ecological origin Syst Appl Microbiol 19 122 132 (Pubitemid 26138164)
16. JFU Iranzo AIB Perez PMI Canar 1998 Study of the oenological characteristics and enzymatic activities of wine yeasts Food Microbiol 15 399 406 10.1006/fmic.1998.0183 1:CAS:528:DyaK1cXmvVelur0%3D (Pubitemid 28445656)
17. K Jeyaram MW Singh A Capece P Romano 2008 Molecular identification of yeast species associated with 'Hamei'-a traditional starter used for rice wine production in Manipur, India Int J Food Microbiol 124 115 125 18433905 10.1016/j.ijfoodmicro.2008.02.029 1:CAS:528:DC%2BD1cXmsValtLs%3D
18. K Jeyaram TA Singh W Romi AR Devi WM Singh H Dayanidhi NR Singh JP Tamang 2009 Traditional fermented foods of Manipur Indian J Tradit Knowl 8 1 115 121
19. Kreger-Van Rij NJW (1984) The yeasts a taxonomic study. Elsevier Science Publishers, Amsterdam
20. CP Kurtzman CJ Robnett 1998 Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences Antonie van Leeuwenhoek 73 331 371 9850420 10.1023/A:1001761008817 1:CAS:528:DyaK1MXjtFOjsg%3D%3D (Pubitemid 28528723)
21. J Legras D Merdinoglu J Cornuet F Karst 2007 Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history Mol Ecol 16 2091 2102 17498234 10.1111/j.1365-294X.2007.03266.x 1:CAS:528:DC%2BD2sXntVyksb0%3D (Pubitemid 46718913)
22. G Liti DM Carter AM Moses, et al. 2009 Population genomics of domestic and wild yeasts Nature 458 337 341 19212322 10.1038/nature07743 1:CAS:528:DC%2BD1MXhvFKisrc%3D
23. E Longo F Vezinhet 1993 Chromosomal rearrangements during vegetative growth of a wild strain of Saccharomyces cerevisiae Appl Environ Microbiol 59 322 326 8439158 1:CAS:528:DyaK3sXns1yrug%3D%3D (Pubitemid 23028411)
24. M Lopes C Cotta-Ramusino A Pellicioli G Liberi P Plevani M Muzi-Falconi CS Newlon M Foiani 2001 The DNA replication checkpoint response stabilizes stalled replication forks Nature 412 557 561 11484058 10.1038/35087613 1:CAS:528:DC%2BD3MXlvFGrtbo%3D (Pubitemid 32743836)
25. CA Lopes M Van Broock A Querol AC Caballero 2002 Saccharomyces cerevisiae wine yeast populations in a cold region in Argentinean Patagonia. A study at different fermentation scales J Appl Microbiol 93 608 615 12234344 10.1046/j.1365-2672.2002.01738.x 1:CAS:528:DC%2BD38XosVWrsr8%3D
26. CA Lopes TL Lavalle A Querol AC Caballero 2006 Combined use of killer biotype and mtDNA-RFLP patterns in a Patagonian wine Saccharomyces cerevisiae diversity study Antonie van Leeuwenhoek 89 147 156 16328858 10.1007/s10482-005- 9017-y 1:CAS:528:DC%2BD28Xjsl2iurc%3D
27. C Martinez S Gac A Lavin M Gangal 2004 Genomic characterization of Saccharomyces cereviseae strains isolated from wine-producing areas in South America J Appl Microbiol 96 1161 1168 15078534 10.1111/j.1365-2672.2004.02255.x 1:CAS:528:DC%2BD2cXksFOltr0%3D (Pubitemid 38582164)
28. C Martinez P Cosgaya C Vasquez S Gac A Ganga 2007 High degree of correlation between molecular polymorphism and geographic origin of wine yeast strains J Appl Microbiol 103 2185 2195 18045401 10.1111/j.1365-2672.2007.03493.x 1:CAS:528:DC%2BD1cXnvFalsw%3D%3D (Pubitemid 350191187)
29. PE McGovern J Zhang J Tang Z Zhang GR Hall RA Moreau A Nunez ED Butrym MP Richards CS Wang G Cheng Z Zhao C Wang 2004 Fermented beverages of pre- and proto-historic China Proc Natl Acad Sci USA 101 17593 17598 15590771 10.1073/pnas.0407921102 1:CAS:528:DC%2BD2MXjtVSisA%3D%3D (Pubitemid 40051931)
30. RK Mortimer 2000 Evolution and variation of the yeast (Saccharomyces) Genome Res 10 403 409 10779481 10.1101/gr.10.4.403 1:CAS:528: DC%2BD3cXjtVKrsrY%3D (Pubitemid 30259071)
31. A Nakazato T Kadokura M Amoano T Harayama Y Murakami M Takeda M Ohkuma T Kudo T Kaneko 1998 Comparison of the structural characteristics of chromosome VI in Saccharomyces sensu stricto: the divergence, species-dependent features and uniqueness of sake yeasts Yeast 14 723 731 9675817 10.1002/(SICI)1097- 0061(19980615)14:8<723::AID-YEA266>3.0.CO;2-T 1:CAS:528:DyaK1cXktFWnt74%3D (Pubitemid 28277569)
32. IS Pretorius 2000 Tailoring wine yeast for the new millennium: novel approaches to the ancient art of wine making Yeast 16 675 729 10861899 10.1002/1097-0061(20000615)16:8<675::AID-YEA585>3.0.CO;2-B 1:CAS:528:DC%2BD3cXktl2it78%3D (Pubitemid 30386786)
33. A Querol E Barrio D Ramon 1992 A comparative study of different methods of yeast strain characterization Syst Appl Microbiol 15 439 446
34. N Rachidi P Barre B Blondin 1999 Multiple Ty-mediated chromosomal translocations lead to karyotype changes in a wine strain of Saccharomyces cerevisiae Mol Gen Genet 261 841 850 10394922 10.1007/s004380050028 1:CAS:528:DyaK1MXks12mtrg%3D (Pubitemid 29286764)
35. Renfrew JW (1999) Palaeoethnobotany and the archaeology of wine. In: Robinson J (ed) The oxford companion to wine, 2nd edn. Oxford University Press, Oxford, pp 508-509
36. F Salinas D Mandakovii U Urzua A Massera S Miras M Combina MA Ganga C Martinez 2010 Genomic and phenotypic comparison of Saccharomyces cerevisiae from different geographical origins J Appl Microbiol 108 1850 1858 20163487 10.1111/j.1365-2672.2010.04689.x 1:CAS:528:DC%2BC3cXntFCrurw%3D
37. J Schacherer JA Shapiro DM Ruderfer L Kruglyak 2009 Comprehensive survey elucidates population structure of Saccharomyces cerevisiae Nature 458 342 345 19212320 10.1038/nature07670 1:CAS:528:DC%2BD1MXhvFKjtrk%3D
38. D Schuller L Pereira H Alves B Cambon S Dequin M Casal 2007 Genetic characterization of commercial Saccharomyces cerevisiae isolates recovered from vineyard environment Yeast 24 625 636 17534867 10.1002/yea.1496 1:CAS:528:DC%2BD2sXhtVSqtrfJ (Pubitemid 47322302)
39. DC Schwartz CR Cantor 1984 Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis Cell 37 67 75 6373014 10.1016/0092-8674(84)90301-5 1:CAS:528:DyaL2cXktlGnsbk%3D (Pubitemid 14079837)
40. IN Sujaya NS Antara T Sone Y Tamura WR Aryanta A Yokota K Asano F Tomita 2004 Identification and characterization of yeasts in brem, a traditional Balinese rice wine World J Microbiol Biotechnol 20 143 150 10.1023/B:WIBI. 0000021727.69508.19 1:CAS:528:DC%2BD2cXisVyqsbs%3D (Pubitemid 39009225)
41. Tamang JP (2010) Himalayan fermented foods: microbiology, nutrition, and ethnic values. CRC Press, Taylor and Francis Group, New York
42. Tamang JP, Samuel D (2010) Dietary culture and antiquity of fermented foods and beverages. In: Tamang JP, Kailasapathy K (eds) Fermented foods and beverages of the world. CRC Press, Taylor and Francis Group, New York
43. JP Tamang S Thapa 2006 Fermentation dynamics during production of bhaati jaanr, a traditional fermented rice beverage of the Eastern Himalayas Food Biotechnol 20 3 251 261 10.1080/08905430600904476 1:CAS:528:DC%2BD28Xht1erur7L (Pubitemid 44721739)
44. S Thapa JP Tamang 2004 Product characterization of kodo ko jaanr: fermented finger millet beverage of the Himalayas Food Microbiol 21 617 622 10.1016/j.fm.2004.01.004 (Pubitemid 38587818)
45. N Tsuyoshi R Fudou S Yamanaka M Kozaki N Tamang S Thapa JP Tamang 2005 Identification of yeast strains isolated from marcha in Sikkim, a microbial starter for amylolytic fermentation Int J Food Microbiol 99 135 146 15734562 10.1016/j.ijfoodmicro.2004.08.011 1:CAS:528:DC%2BD2MXhslegsro%3D (Pubitemid 40269891)
46. A Versavaud P Coucoux C Roulland L Dulac J Hallet 1995 Genetic diversity and geographical distribution of wild Saccharomyces cerevisiae strains from the wine producing area of charentes, France Appl Environ Microbiol 61 3521 3529 7486988 1:CAS:528:DyaK2MXosFGnurk%3D