Molecular identification of yeast species associated with 'Hamei' - A traditional starter used for rice wine production in Manipur, India

International Journal of Food Microbiology

Volumn 124, Issue 2, 2008, Pages 115-125

  Jeyaram, K ^a   Singh, W Mohendro ^a   Capece, Angela ^b   Romano, Patrizia ^b  

^a INSTITUTE OF BIORESOURCES AND SUSTAINABLE DEVELOPMENT   (India)

^b UNIVERSITY OF BASILICATA   (Italy)

Author keywords

Hamei; ITS RFLP; mt DNA RFLP; PFGE; Pichia; Rice wine; Saccharomyces; Trichosporon

Indexed keywords

FUNGAL DNA;

ARTICLE; CANDIDA; CANDIDA MONTANA; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS; CLUSTER ANALYSIS; COMPUTER MODEL; FUNGAL STRAIN; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENE AMPLIFICATION; KARYOTYPE; NONHUMAN; PICHIA; PICHIA ANOMALA; PICHIA FABIANII; PICHIA GUILLIERMONDI; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE; SACCHAROMYCES CEREVISIAE; TORULASPORA DELBRUECKII; TRICHOSPORON; WINE; YEAST;

CLUSTER ANALYSIS; DNA RESTRICTION ENZYMES; DNA, INTERGENIC; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, GEL, PULSED-FIELD; GENES, FUNGAL; INDUSTRIAL MICROBIOLOGY; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; ORYZA SATIVA; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 5.8S; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS); WINE; YEASTS;

CANDIDA MONTANA; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS; PICHIA; PICHIA ANOMALA; PICHIA FABIANII; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; TORULASPORA DELBRUECKII;

EID: 43549084545     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2008.02.029     Document Type: Article

References (45)

1. Almedia A.M.F., Matsumoto M.T., Baeza L.C., Silva R.B.O., Kleiner A.A.P., Melhem M.S.C., Giannini M.J.S.M., and the laboratory group on Cryptococcosis. Molecular typing and antifungal susceptibility of clinical sequential isolates of Cryptococcus neoformans from Sao Paulo State, Brazil. FEMS Yeast Res. 7 (2007) 152-164
2. Arias C.R., Burus J.K., Friedrich L.M., Goodrich R.M., and Parish M.E. Yeast species associated with orange juice: evaluation of different identification methods. Appl. Environ. Microbiol. 68 (2002) 1955-1961
3. Blandino A., Al-Aseeri M.E., Pandiella S.S., Cantero D., and Webb C. Cereal-based fermented foods and beverages. Food Res. Int. 36 (2003) 527-543
4. Briones A.I., Ubeda J., and Grando M.S. Differentiation of Saccharomyces cerevisiae strains isolated from fermenting musts according to their karyotype patterns. Int. J. Food Microbiol. 28 (1996) 369-377
5. Cadez N., Raspor P., deCock A.W.A.M., Boekhout T., and Smith M.T. Molecular identification and genetic diversity within species of the genera Hanseniaspora and Kloekera. FEMS Yeast Res. 1 (2002) 279-289
6. Caggia C., Restuccia C., Pulvirenti A., and Giudici P. Identification of Pichia anomala isolated from yoghurt by RFLP of the ITS region. Int. J. Food Microbiol. 71 (2001) 71-73
7. Canas P.M.I., Iranzo J.F.U., and Perez A.I.B. Study of the karyotype of wine yeasts isolated in the regions of Valdepenas in two consecutive vintages. Food Microbiol. 14 (1997) 221-225
8. Clemente-Jimenez J.M., Mingorance-Cazorla L., Martinez-Rodriguez S., Heras-Vazquez F.J., and Rodriguez-Vico F. Molecular characterization and oenological properties of wine yeasts isolated during spontaneous fermentation of six varieties of grape must. Food Microbiol. 21 (2004) 149-155
9. Coton E., Coton M., Levert D., Casaregola S., and Sohier D. Yeast ecology in French cider and black olive natural fermentations. Int. J. Food Microbiol. 108 (2006) 130-135
10. Couto M.M.B., Reizinho R.G., and Duarte. Partial 26S rDNA restriction analysis as a tool to characterize non-Saccharomyces yeasts present during red wine fermentation. Int. J. Food Microbiol. 102 (2005) 49-56
11. Diaz M.R., and Fell J.W. Molecular analysis of the IGS & ITS regions of rDNA of the psychrophilic yeasts in the genus Mrakia. Antonie van Leewenhoek 77 (2000) 7-12
12. Dlauchy D., Tornai-Lehoczki J., and Peter G. Restriction enzyme analysis of PCR amplified rDNA as a taxonomic tool in yeast identification. System. Appl. Microbiol. 22 (1999) 445-453
13. Dung N.T.P., Rombouts F.M., and Nout M.J.R. Development of defined mixed culture fungal fermentation starter granulate for controlled production of rice wine. Innov. Food Sci. Emerg. Technol. 6 (2005) 429-441
14. Dung N.T.P., Rombouts F.M., and Nout M.J.R. Characteristics of some traditional Vietnamese starch-based rice wine fermentation starters (mem). Lebensm-Wiss Technol. 40 (2007) 130-135
15. Dunham M.J., Badrane H., Ferea T., Adams J., Brown P.O., Rosenzweig F., and Botstein D. Characteristic genome rearrangements in experimental evolutions of Saccharomyces cerevisiae. PNAS 99 (2002) 16144-16149
16. Esteve-Zarzoso B., Belloch C., Uruburu F., and Querol A. Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int. J. Syst. Bactriol. 49 (1999) 329-337
17. Fernandez-Espinar M.T., Esteve-zarzoso B., Querol A., and Barrio E. RFLP analysis of the internal transcribed spacers and the 5.8S rRNA gene region of the genus Saccharomyces: a fast method for species identification and the differentiation of flour yeasts. Antonie van Leeuwenhoek 78 (2000) 87-97
18. Fernandez-Espinar M.T., Lopez V., Ramon D., Bartra E., and Querol A. Study of the authenticity of commercial wine yeast strains by molecular technique. Int. J. Food Microbiol. 70 (2001) 1-10
19. Fischer G., James S.A., Roberts I.N., Oliver S.G., and Louis E.T. Chromosomal evolution in Saccharomyces. Nature 405 (2000) 451-453
20. de Llanos F.R., Fernandez-Espinar M.T., and Querol A. Identification of species of the genus Candida by analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Antonie van Leeuwenhoek. 85 (2004) 175-185
21. Gonzalez S.S., Barrio E., and Querol A. Molecular identification and characterization of wine yeasts isolated from Tenerife (Canary Island, Spain). J. Appl. Microbiol (2006) 10.1111/j.1365-2672.2006.03150.x
22. Granchi L., Bosco M., Messini A., and Vincenzini M. Rapid detection and quantification of yeast species during spontaneous wine fermentation by PCR-RFLP analysis of the rDNA ITS region. J. Appl. Microbiol. 87 (1999) 949-956
23. Guillamon J.M., Sabate J., Barrio E., Cano J., and Querol A. Rapid identification of wine yeasts species based on RFLP analysis of the ribosomal internal transcribed spacer (ITS) region. Arch. Microbial. 169 5 (1998) 387-392
24. Heras-Vazquez F.J.L., Mingorance-Cazorla L., Clemente-Jimenez J.M., and Rodriguez Vico F. Identification of yeast species from orange fruit juice by RFLP and sequence analysis of the 5.8S rRNA gene and the two internal transcribed spacers. FEMS Yeast Res. 3 (2003) 3-9
25. Jemec K.P., Cadez N., Zagorc T., Bubic V., Zupec A., and Raspor P. Yeast population dynamics in five spontaneous fermentation of Malvasia must. Food Microbiol. 18 (2001) 247-259
26. Jespersen L. Occurrence and taxonomic characteristics of strains of Saccharomyces cerevisiae predominant in African indigenous fermented foods and beverages. FEMS Yeast Res. 3 (2003) 191-200
27. Kurtzman C.P., and Robnett C.J. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73 (1998) 331-371
28. Lopez V., Querol A., Ramon D., and Fernandez-Espinar M.T. A simplified procedure to analyse mitochondrial DNA from industrial yeasts. Int. J. Food Microbiol. 68 (2001) 75-81
29. Middelhoven W.J., Scorzetti G., and Fell J.W. Trichosporon porosum comb. nov., an anamorphic basidiomycetous yeast inhabiting soil, related to the loubieri/laibachii group of species that assimilate hemicelluloses and phenolic compounds. FEMS Yeast Res. 1 (2001) 15-22
30. Molnar O., Schatzmayr G., Fuchs E., and Prillinger H. Trichosporon mycotoxinivorans sp. nov., A new yeast species useful in biological detoxification of various mycotoxins. System. Appl. Microbiol. 27 (2004) 661-671
31. Naumova E.S., Korshunova I.V., Jespersen L., and Naumov G.I. Molecular genetic identification of Saccharomyces sensu stricto strains for African sorghum beer. FEMS Yeast Res. 3 (2003) 177-184
32. Nisiotou A.A., and Gibson G.R. Isolation of culturable yeasts from market wines and evaluation of the 5.8S-ITSrDNA sequence analysis for identification purposes. Lett. Appl. Microbiol. 41 (2005) 454-463
33. Prameteftaki P.V., Lanaridis P., and Typas M.A. Molecular identification of wine yeasts at species or strain level: a case study with strains from two vine-growing areas of Greece. J. Appl. Microbiol. 89 (2000) 236-248
34. Querol A., and Barrio E. A rapid and simple method for the preparation of yeast mitochondrial DNA. Nucleic Acids Res. 18 6 (1990) 1657
35. Querol A., Barrio E., and Ramon D. A comparative study of different methods of yeast strains characterization. System. Appl. Microbiol. 15 (1992) 439-446
36. Querol A., and Ramon D. The application of molecular techniques in wine microbiology. Trends Food Sci. Technol. 7 (1996) 73-78
37. Sabate J., Cano J., Esteve-Zarzoso B., and Guillamon J.M. Isolation and identification of yeast associated with Vineyard and winery by RFLP analysis of ribosomal genes and mitochondrial DNA. Microbiol. Res. 157 (2002) 267-274
38. Schwartz D.H., and Cantor C.R. Separation of yeast chromosome-size DNAs by pulsed field gradient gel electrophoresis. Cell 37 (1984) 67-75
39. Scoll D.R. The ins and outs of DNA fingerprinting the infectious fungi. Clin. Microbiol. Rev. 13 (2000) 332-370
40. Sipiczki M., Romano P., Lipani G., Miklos I., and Antunovics Z. Analysis of yeasts derived from natural fermentation in a Tokaj winery. Antonie van Leeuwenhoek 79 (2001) 97-105
41. Sujaya I.N., Antara N.S., Sone T., Tamura Y., Aryanta W.R., Yokota A., Asano K., and Tomita F. Identification and characterization of yeasts in brem, a traditional Balinese rice wine. World J. Microbiol. Biotechnol. 20 (2004) 143-150
42. Torriani S., Zapparoli G., and Suzzi G. Genetic and phenotypic diversity of Saccharomyces sensu stricto strain isolated from Amarone wine. Antonie van Leeuwenhoek 75 (1999) 207-215
43. Tsuyoshi N., Fudou R., Yamanaka S., Kozaki M., Tamang N., Thapa S., and Tamang J.P. Identification of yeast strains isolated from marcha in Sikkim, a microbial starter for amylolytic fermentation. Int. J. Food Microbiol. 99 (2005) 135-146
44. Villa-Carvajal M., Querol A., and Belloch C. Identification of species in the genus Pichia by restriction of the internal transcribed spacers (ITS1 and ITS2) and the 5.8S ribosomal DNA gene. Antonie van Leeuwenhoek 90 (2006) 171-181
45. White T.J., Bruns T., Lee S., and Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Snissky J.J., and White T.J. (Eds). PCR protocols: A guide to methods and applications (1990), Academic Press Inc., NewYork 315-322