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Volumn 634, Issue , 2010, Pages 239-256

Directed in vitro evolution of reporter genes based on semi-rational design and high-throughput screening

Author keywords

Degenerate oligonucleotide; Directed evolution; DNA shuffling; High throughput screening; Semi rational design

Indexed keywords

ESCHERICHIA COLI;

EID: 80053452331     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60761-652-8_18     Document Type: Article
Times cited : (5)

References (46)
  • 1
    • 0028050350 scopus 로고
    • Rapid evolution of a protein in vitro by DNA shuffling
    • Stemmer WP (1994) Rapid evolution of a protein in vitro by DNA shuffling. Nature 370:389-391
    • (1994) Nature , vol.370 , pp. 389-391
    • Stemmer, W.P.1
  • 2
    • 0028110130 scopus 로고
    • DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolution
    • Stemmer WP (1994) DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc Natl Acad Sci USA 91:10747-10751
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 10747-10751
    • Stemmer, W.P.1
  • 4
    • 0034798044 scopus 로고    scopus 로고
    • Improving the quality of industrially important enzymes by directed evolution
    • Chirumamilla RR, Muralidhar R, Marchant R, Nigam P (2001) Improving the quality of industrially important enzymes by directed evolution. Mol Cell Biochem 224:159-168
    • (2001) Mol Cell Biochem , vol.224 , pp. 159-168
    • Chirumamilla, R.R.1    Muralidhar, R.2    Marchant, R.3    Nigam, P.4
  • 5
    • 0036536478 scopus 로고    scopus 로고
    • Directed evolution of enzymes and pathways for industrial biocatalysis
    • Zhao H, Chockalingam K, Chen Z (2002) Directed evolution of enzymes and pathways for industrial biocatalysis. Curr Opin Biotechnol 13:104-110
    • (2002) Curr Opin Biotechnol , vol.13 , pp. 104-110
    • Zhao, H.1    Chockalingam, K.2    Chen, Z.3
  • 6
    • 0346780250 scopus 로고    scopus 로고
    • Directed evolution of enzymes: New biocatalysts for asymmetric synthesis
    • Alexeeva M, Carr R, Turner NJ (2003) Directed evolution of enzymes: new biocatalysts for asymmetric synthesis. Org Biomol Chem 1:4133-4137
    • (2003) Org Biomol Chem , vol.1 , pp. 4133-4137
    • Alexeeva, M.1    Carr, R.2    Turner, N.J.3
  • 8
    • 18044390504 scopus 로고    scopus 로고
    • Directed evolution: Selecting today's biocatalysts
    • Otten LG, Quax WJ (2005) Directed evolution: selecting today's biocatalysts. Biomol Eng 22:1-9
    • (2005) Biomol Eng , vol.22 , pp. 1-9
    • Otten, L.G.1    Quax, W.J.2
  • 9
    • 0035118386 scopus 로고    scopus 로고
    • Directed molecular evolution in plant improvement
    • Lassner M, Bedbrook J (2001) Directed molecular evolution in plant improvement. Curr Opin Plant Biol 4:152-156
    • (2001) Curr Opin Plant Biol , vol.4 , pp. 152-156
    • Lassner, M.1    Bedbrook, J.2
  • 10
    • 0038606300 scopus 로고    scopus 로고
    • Forced evolution of a herbicide detoxifying glutathione transferase
    • Dixon DP, McEwen AG, Lapthorn AJ, Edwards R (2003) Forced evolution of a herbicide detoxifying glutathione transferase. J Biol Chem 278:23930-23935
    • (2003) J Biol Chem , vol.278 , pp. 23930-23935
    • Dixon, D.P.1    McEwen, A.G.2    Lapthorn, A.J.3    Edwards, R.4
  • 12
    • 0034026210 scopus 로고    scopus 로고
    • Metabolic engineering and directed evolution for the production of pharmaceuticals
    • Chartrain M, Salmon PM, Robinson DK, Buckland BC (2000) Metabolic engineering and directed evolution for the production of pharmaceuticals. Curr Opin Biotechnol 11:209-214
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 209-214
    • Chartrain, M.1    Salmon, P.M.2    Robinson, D.K.3    Buckland, B.C.4
  • 14
    • 16844377999 scopus 로고    scopus 로고
    • DNA shuffling and screening strategies for improving vaccine efficacy
    • Locher CP, Paidhungat M, Whalen RG, Punnonen J (2005) DNA shuffling and screening strategies for improving vaccine efficacy. DNA Cell Biol 24:256-263
    • (2005) DNA Cell Biol , vol.24 , pp. 256-263
    • Locher, C.P.1    Paidhungat, M.2    Whalen, R.G.3    Punnonen, J.4
  • 15
    • 3843148510 scopus 로고    scopus 로고
    • Development of novel vaccines using DNA shuffling and screening strategies
    • Locher CP, Soong NW, Whalen RG, Punnonen J (2004) Development of novel vaccines using DNA shuffling and screening strategies. Curr Opin Mol Ther 6:34-39
    • (2004) Curr Opin Mol Ther , vol.6 , pp. 34-39
    • Locher, C.P.1    Soong, N.W.2    Whalen, R.G.3    Punnonen, J.4
  • 16
    • 0032518266 scopus 로고    scopus 로고
    • DNA shuffling of a family of genes from diverse species accelerates directed evolution
    • Crameri A, Raillard SA, Bermudez E, Stemmer WP (1998) DNA shuffling of a family of genes from diverse species accelerates directed evolution. Nature 391:288-291
    • (1998) Nature , vol.391 , pp. 288-291
    • Crameri, A.1    Raillard, S.A.2    Bermudez, E.3    Stemmer, W.P.4
  • 18
    • 19644371928 scopus 로고    scopus 로고
    • One-step random mutagenesis by error-prone rolling circle amplification
    • Fujii R, Kitaoka M, Hayashi K (2004) One-step random mutagenesis by error-prone rolling circle amplification. Nucleic Acids Res 32:e145
    • (2004) Nucleic Acids Res , vol.32
    • Fujii, R.1    Kitaoka, M.2    Hayashi, K.3
  • 19
    • 0033964975 scopus 로고    scopus 로고
    • An effective family shuffling method using single-stranded DNA
    • Kikuchi M, Ohnishi K, Harayama S (2000) An effective family shuffling method using single-stranded DNA. Gene 243:133-137
    • (2000) Gene , vol.243 , pp. 133-137
    • Kikuchi, M.1    Ohnishi, K.2    Harayama, S.3
  • 20
    • 0035854021 scopus 로고    scopus 로고
    • Degenerate oligonucleotide gene shuffling (DOGS): A method for enhancing the frequency of recombination with family shuffling
    • Gibbs MD, Nevalainen KM, Bergquist PL (2001) Degenerate oligonucleotide gene shuffling (DOGS): a method for enhancing the frequency of recombination with family shuffling. Gene 271:13-20
    • (2001) Gene , vol.271 , pp. 13-20
    • Gibbs, M.D.1    Nevalainen, K.M.2    Bergquist, P.L.3
  • 21
    • 1542353447 scopus 로고    scopus 로고
    • RACHITT: Gene family shuffling by random chimeragenesis on transient templates
    • Coco WM (2003) RACHITT: Gene family shuffling by Random Chimeragenesis on Transient Templates. Methods Mol Biol 231:111-127
    • (2003) Methods Mol Biol , vol.231 , pp. 111-127
    • Coco, W.M.1
  • 22
    • 0036137462 scopus 로고    scopus 로고
    • Random insertion and deletion of arbitrary number of bases for codon-based random mutation of DNAs
    • Murakami H, Hohsaka T, Sisido M (2002) Random insertion and deletion of arbitrary number of bases for codon-based random mutation of DNAs. Nat Biotechnol 20: 76-81
    • (2002) Nat Biotechnol , vol.20 , pp. 76-81
    • Murakami, H.1    Hohsaka, T.2    Sisido, M.3
  • 24
    • 0035836707 scopus 로고    scopus 로고
    • Directed evolution of polymerase function by compartmentalized self-replication
    • Ghadessy FJ, Ong JL, Holliger P (2001) Directed evolution of polymerase function by compartmentalized self-replication. Proc Natl Acad Sci USA 98:4552-4557
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4552-4557
    • Ghadessy, F.J.1    Ong, J.L.2    Holliger, P.3
  • 25
    • 18044362514 scopus 로고    scopus 로고
    • Degenerate oligonucleotide gene shuffling (DOGS) and random drift mutagenesis (RNDM): Two complementary techniques for enzyme evolution
    • Bergquist PL, Reeves RA, Gibbs MD (2005) Degenerate oligonucleotide gene shuffling (DOGS) and random drift mutagenesis (RNDM): two complementary techniques for enzyme evolution. Biomol Eng 22:63-72
    • (2005) Biomol Eng , vol.22 , pp. 63-72
    • Bergquist, P.L.1    Reeves, R.A.2    Gibbs, M.D.3
  • 27
    • 0036951893 scopus 로고    scopus 로고
    • Construction of DNA-shuffled and incrementally truncated libraries by a mutagenic and unidirectional reassembly method: Changing from a substrate specificity of phospholipase to that of lipase
    • Song JK, Chung B, Oh YH, Rhee JS (2002) Construction of DNA-shuffled and incrementally truncated libraries by a mutagenic and unidirectional reassembly method: changing from a substrate specificity of phospholipase to that of lipase. Appl Environ Microbiol 68:6146-6151
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6146-6151
    • Song, J.K.1    Chung, B.2    Oh, Y.H.3    Rhee, J.S.4
  • 28
    • 0036299808 scopus 로고    scopus 로고
    • Family shuffling of a targeted bphA region to engineer biphenyl dioxygenase
    • Barriault D, Plante MM, Sylvestre M (2002) Family shuffling of a targeted bphA region to engineer biphenyl dioxygenase. J Bacteriol 184:3794-3800
    • (2002) J Bacteriol , vol.184 , pp. 3794-3800
    • Barriault, D.1    Plante, M.M.2    Sylvestre, M.3
  • 29
    • 36248991449 scopus 로고    scopus 로고
    • A semi-rational design strategy of directed evolution combined with chemical synthesis of DNA sequences
    • Xiong AS, Peng RH, Zhuang J, Liu JG, Gao F, Xu F, Cai B, Yao QH (2007) A semi-rational design strategy of directed evolution combined with chemical synthesis of DNA sequences. Biol Chem 388:1291-1300
    • (2007) Biol Chem , vol.388 , pp. 1291-1300
    • Xiong, A.S.1    Peng, R.H.2    Zhuang, J.3    Liu, J.G.4    Gao, F.5    Xu, F.6    Cai, B.7    Yao, Q.H.8
  • 30
    • 18144403554 scopus 로고    scopus 로고
    • Improving enzyme properties: When are closer mutations better?
    • Morley KL, Kazlauskas RJ (2005) Improving enzyme properties: when are closer mutations better? Trends Biotechnol 23:231-237
    • (2005) Trends Biotechnol , vol.23 , pp. 231-237
    • Morley, K.L.1    Kazlauskas, R.J.2
  • 31
    • 24044554219 scopus 로고    scopus 로고
    • Sitesaturation mutagenesis is more efficient than DNA shuffling for the directed evolution of beta-fucosidase from beta-galactosidase
    • Parikh MR, Matsumura I (2005) Sitesaturation mutagenesis is more efficient than DNA shuffling for the directed evolution of beta-fucosidase from beta-galactosidase. J Mol Biol 352:621-628
    • (2005) J Mol Biol , vol.352 , pp. 621-628
    • Parikh, M.R.1    Matsumura, I.2
  • 32
    • 34548231218 scopus 로고    scopus 로고
    • Rational evolutionary design and modification of gene: A short-path of direct evolution
    • Xiong AS, Yao QH, Zhang Z, Peng RH, Zhuang J, Xu F, Liu JG, Zhu H (2006) Rational evolutionary design and modification of gene: a short-path of direct evolution. Yi Chuan 28:92-96
    • (2006) Yi Chuan , vol.28 , pp. 92-96
    • Xiong, A.S.1    Yao, Q.H.2    Zhang, Z.3    Peng, R.H.4    Zhuang, J.5    Xu, F.6    Liu, J.G.7    Zhu, H.8
  • 33
    • 2942739036 scopus 로고    scopus 로고
    • Rapid evolution of beta-glucuronidase specificity by saturation mutagenesis of an active site loop
    • Geddie ML, Matsumura I (2004) Rapid evolution of beta-glucuronidase specificity by saturation mutagenesis of an active site loop. J Biol Chem 279:26462-26468
    • (2004) J Biol Chem , vol.279 , pp. 26462-26468
    • Geddie, M.L.1    Matsumura, I.2
  • 34
    • 0347089333 scopus 로고    scopus 로고
    • Selectable marker genes in transgenic plants: Applications, alternatives and biosafety
    • Miki B, McHugh S (2004) Selectable marker genes in transgenic plants: applications, alternatives and biosafety. J Biotechnol 107:193-232
    • (2004) J Biotechnol , vol.107 , pp. 193-232
    • Miki, B.1    McHugh, S.2
  • 35
    • 0030989062 scopus 로고    scopus 로고
    • Directed evolution of a fucosidase from a galactosidase by DNA shuffling and screening
    • Zhang JH, Dawes G, Stemmer WP (1997) Directed evolution of a fucosidase from a galactosidase by DNA shuffling and screening. Proc Natl Acad Sci USA 94:4504-4509
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4504-4509
    • Zhang, J.H.1    Dawes, G.2    Stemmer, W.P.3
  • 36
    • 0029670330 scopus 로고    scopus 로고
    • Improved green fluorescent protein by molecular evolution using DNA shuffling
    • Crameri A, Whitehorn EA, Tate E, Stemmer WP (1996) Improved green fluorescent protein by molecular evolution using DNA shuffling. Nat Biotechnol 14:315-319
    • (1996) Nat Biotechnol , vol.14 , pp. 315-319
    • Crameri, A.1    Whitehorn, E.A.2    Tate, E.3    Stemmer, W.P.4
  • 37
    • 0030000625 scopus 로고    scopus 로고
    • DNA shuffling brightens prospects for GFP
    • Matsumura I, Ellington AD (1996) DNA shuffling brightens prospects for GFP. Nat Biotechnol 14:366
    • (1996) Nat Biotechnol , vol.14 , pp. 366
    • Matsumura, I.1    Ellington, A.D.2
  • 38
    • 1442359485 scopus 로고    scopus 로고
    • Functional tuning of a salvaged green fluorescent protein variant with a new sequence space by directed evolution
    • Nam SH, Oh KH, Kim GJ, Kim HS (2003) Functional tuning of a salvaged green fluorescent protein variant with a new sequence space by directed evolution. Protein Eng 16:1099-1105
    • (2003) Protein Eng , vol.16 , pp. 1099-1105
    • Nam, S.H.1    Oh, K.H.2    Kim, G.J.3    Kim, H.S.4
  • 39
    • 0034683125 scopus 로고    scopus 로고
    • Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence
    • Fradkov AF, Chen Y, Ding L, Barsova EV, Matz MV, Lukyanov SA (2000) Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence. FEBS Lett 479:127-130
    • (2000) FEBS Lett , vol.479 , pp. 127-130
    • Fradkov, A.F.1    Chen, Y.2    Ding, L.3    Barsova, E.V.4    Matz, M.V.5    Lukyanov, S.A.6
  • 40
    • 0035846958 scopus 로고    scopus 로고
    • Vitro evolution of beta-glucuronidase into a betagalactosidase proceeds through non-specific intermediates
    • Matsumura I, Ellington AD (2001) In vitro evolution of beta-glucuronidase into a betagalactosidase proceeds through non-specific intermediates. J Mol Biol 305:331-339
    • (2001) J Mol Biol , vol.305 , pp. 331-339
    • Matsumura, I.1    Ellington, A.D.2
  • 41
    • 0036303387 scopus 로고    scopus 로고
    • Increasing the thermal stability of an oligomeric protein, beta-glucuronidase
    • Flores H, Ellington AD (2002) Increasing the thermal stability of an oligomeric protein, beta-glucuronidase. J Mol Biol 315:325-337
    • (2002) J Mol Biol , vol.315 , pp. 325-337
    • Flores, H.1    Ellington, A.D.2
  • 45
    • 3042820410 scopus 로고    scopus 로고
    • A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences
    • Xiong AS, Yao QH, Peng RH, Li X, Fan HQ, Cheng ZM, Li Y (2004) A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences. Nucleic Acids Res 32:e98
    • (2004) Nucleic Acids Res , vol.32
    • Xiong, A.S.1    Yao, Q.H.2    Peng, R.H.3    Li, X.4    Fan, H.Q.5    Cheng, Z.M.6    Li, Y.7


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