Degenerate oligonucleotide gene shuffling (DOGS) and random drift mutagenesis (RNDM): Two complementary techniques for enzyme evolution

Biomolecular Engineering

Volumn 22, Issue 1-3, 2005, Pages 63-72

  Bergquist, Peter L ^a,b   Reeves, Rosalind A ^a   Gibbs, Moreland D ^a  

^a MACQUARIE UNIVERSITY   (Australia)

^b UNIVERSITY OF AUCKLAND   (New Zealand)

Author keywords

Flow cytometry; Gene shuffling; In vitro evolution; Polymerase chain reaction; Primer extension; Random mutation

Indexed keywords

BIOCHEMICAL ENGINEERING; CELLS; COATINGS; DNA; ENZYMES; MUTAGENESIS;

CHIMERIC GENES; DEGENERATE OLIGONUCLEOTIDE GENE SHUFFLING (DOGS); PRIMERS;

GENES;

CYSTEINE; ENDO 1,4 BETA XYLANASE; ENDONUCLEASE; GLYCINE; OLIGONUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; CHIMERA; CONTROLLED STUDY; DNA SHUFFLING; ENZYME ACTIVITY; FRAGMENTATION REACTION; GENE MUTATION; GENETIC RECOMBINATION; MOLECULAR EVOLUTION; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; RANDOM DRIFT MUTAGENESIS;

EID: 18044362514     PISSN: 13890344     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioeng.2004.10.002     Document Type: Article

References (26)

1. C. Bessler, J. Schmitt, K.H. Maurer, and R.D. Schmid Protein Sci 12 2003 2141 2149
2. N.J. Turner Trends Biotechnol 21 2003 474 478
3. S. Chopra, and A. Rananathan Chem Biol 10 2003 917 926
4. M.D. Gibbs, K.M.H. Nevalainen, and P.L. Bergquist Gene 271 2001 13 20
5. D.D. Morris, M.D. Gibbs, C.W. Chin, M.H. Koh, K.K.Y. Wong, and R.W. Allison Appl Environ Microbiol 64 1998 1759 1765
6. K. Sakka, Y. Kojima, T. Kondo, S. Karita, K. Ohmiya, and K. Shimada Biosci Biotechnol Biochem 57 1993 273 277
7. V.W. Yang, Z. Zhuang, G. Elegir, and T.W. Jeffries J Ind Microbiol 15 1995 434 441
8. D.D. Morris, M.D. Gibbs, M. Ford, J. Thomas, and P.L. Bergquist Extremophiles 3 1999 103 111
9. A.C. Fernandes, C.M. Fontes, H.J. Gilbert, G.P. Hazlewood, T.H. Fernandes, and L.M. Ferreira Biochem J 342 1999 105 110
10. G. Elegir, G. Szakacs, and T.W. Jeffries Appl Environ Microbiol 60 1994 2609 2615
11. D.R. Love, R. Fisher, and P.L. Bergquist Mol Gen Genet 213 1988 84 92
12. T.M. Rose, E.R. Schultz, J.G. Henikoff, S. Pietrokovski, C.M. McCallum, and S. Henikoff Nucl Acids Res 26 1998 1628 1635
13. S.N. Ho, H.D. Hunt, R.M. Horton, J.K. Pullen, and L.R. Pease Gene 77 1989 51 59
14. R.M. Teather, and P.J. Wood Appl Environ Microbiol 43 1982 777 780
15. M. Lever Biochem Med 7 1973 274 281
16. H.T.S. Britton, and R.A. Robinson J Chem Soc 1 1931 1456 1462
17. R.C. Cadwell, and G.F. Joyce PCR Meth Appl 2 1992 28 33
18. A. Plovins, A.M. Alvarez, M. Ibanez, M. Molina, and C. Nombela Appl Environ Microbiol 60 1994 4638 4641
19. Y. Kang, E. Saile, M.A. Schell, and T.P. Denny Appl Environ Microbiol 65 1999 2356 2362
20. A. Alvarez-Barrientos, J. Arrayo, R. Cantón, C. Nombela, and M. Sánchez-Pérez Clin Microbiol Rev 13 2000 167 195
21. A.A. McCarthy, D.D. Morris, P.L. Bergquist, and E.N. Baker Acta Crystallogr D: Biol Crystallogr 56 2000 136 1375
22. W.W. Wakarchuk, R.L. Campbell, W.L. Sung, J. Davoodi, and M. Yaguchi Protein Sci 3 1994 467 475
23. W.W. Wakarchuk, W.L. Sung, R.L. Campbell, D.C. Watson, and M. Yaguchi Protein Eng 7 1994 1379 1386
24. S. Miao, L. Ziser, R. Aebersold, and S.G. Withers Biochemistry 33 1994 7027 7032
25. L.P. McIntosh, G. Hand, P.E. Johnson, M.D. Joshi, M. Korner, and L.A. Plesniak Biochemistry 35 1996 9958 9966
26. J. Davoodi, W.W. Wakarchuk, R.L. Campbell, P.R. Carey, and W.K. Surewicz Eur J Biochem 232 1995 839 843