메뉴 건너뛰기




Volumn 91, Issue 5, 2011, Pages 1247-1265

The benefits of being transient: Isotope-based metabolic flux analysis at the short time scale

Author keywords

Labeling time constants; Metabolic engineering; Metabolic networks; Non stationary 13C metabolic flux analysis; Systems biology; Transient isotope labeling experiments

Indexed keywords

METABOLIC ENGINEERING; METABOLIC NETWORK; NONSTATIONARY; SYSTEMS BIOLOGY; TIME CONSTANTS;

EID: 80052611173     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3390-4     Document Type: Review
Times cited : (64)

References (117)
  • 1
    • 59149092918 scopus 로고    scopus 로고
    • 13C-tracer study of storage carbohydrate pools in aerobic glucose-limited Saccharomyces cerevisiae confirms a rapid steady-state turnover and fast mobilization during a modest stepup in the glucose uptake rate
    • 10.1111/j.1567-1364.2008.00465.x 1:CAS:528:DC%2BD1MXisFCqu74%3D
    • 13C-tracer study of storage carbohydrate pools in aerobic glucose-limited Saccharomyces cerevisiae confirms a rapid steady-state turnover and fast mobilization during a modest stepup in the glucose uptake rate FEMS Yeast Res 9 2 191 201 10.1111/j.1567-1364.2008.00465.x 1:CAS:528:DC%2BD1MXisFCqu74%3D
    • (2009) FEMS Yeast Res , vol.9 , Issue.2 , pp. 191-201
    • Aboka, F.O.1    Heijnen, J.J.2    Van Winden, W.A.3
  • 3
    • 68249110203 scopus 로고    scopus 로고
    • Metabolic flux analysis in plants: Coping with complexity
    • 10.1111/j.1365-3040.2009.01992.x 1:CAS:528:DC%2BD1MXhtFGhtrfJ
    • DK Allen IGL Libourel Y Shachar-Hill 2009 Metabolic flux analysis in plants: coping with complexity Plant Cell Environ 32 9 1241 1257 10.1111/j.1365-3040.2009.01992.x 1:CAS:528:DC%2BD1MXhtFGhtrfJ
    • (2009) Plant Cell Environ , vol.32 , Issue.9 , pp. 1241-1257
    • Allen, D.K.1    Libourel, I.G.L.2    Shachar-Hill, Y.3
  • 4
    • 33745155105 scopus 로고    scopus 로고
    • Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
    • DOI 10.1016/j.ymben.2006.01.004, PII S1096717606000061
    • MR Antoniewicz JK Kelleher G Stephanopoulos 2006 Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements Metab Eng 8 4 324 337 10.1016/j.ymben.2006.01.004 1:CAS:528:DC%2BD28XlvFGqsb0%3D (Pubitemid 43903302)
    • (2006) Metabolic Engineering , vol.8 , Issue.4 , pp. 324-337
    • Antoniewicz, M.R.1    Kelleher, J.K.2    Stephanopoulos, G.3
  • 5
    • 33845679072 scopus 로고    scopus 로고
    • Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
    • DOI 10.1016/j.ymben.2006.09.001, PII S109671760600084X
    • MR Antoniewicz JK Kelleher G Stephanopoulos 2007 Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions Metab Eng 9 1 68 86 10.1016/j.ymben.2006.09.001 1:CAS:528:DC%2BD2sXht1Chug%3D%3D (Pubitemid 44960874)
    • (2007) Metabolic Engineering , vol.9 , Issue.1 , pp. 68-86
    • Antoniewicz, M.R.1    Kelleher, J.K.2    Stephanopoulos, G.3
  • 6
    • 0001296314 scopus 로고    scopus 로고
    • Transport, compartmentation, and metabolism of homoserine in higher plant cells. Carbon-13- and phosphorus-31-nuclear magnetic resonance studies
    • S Aubert G Curien R Bligny E Gout R Douce 1998 Transport, compartmentation, and metabolism of homoserine in higher plant cells. Carbon-13- and phosphorus-31-nuclear magnetic resonance studies Plant Physiol 116 2 547 557 1:CAS:528:DyaK1cXht1aju78%3D (Pubitemid 128482281)
    • (1998) Plant Physiology , vol.116 , Issue.2 , pp. 547-557
    • Aubert, S.1    Curien, G.2    Bligny, R.3    Gout, E.4    Douce, R.5
  • 7
    • 0032909840 scopus 로고    scopus 로고
    • 13C-NMR study
    • DOI 10.1046/j.1365-3040.1999.00421.x
    • S Aubert F Hennion A Bouchereau E Gout R Bligny AJ Dorne 1999 Subcellular compartmentation of proline in the leaves of the subantarctic Kerguelen cabbage Pringlea antiscorbutica R-Br. in vivo C-13-NMR study Plant Cell Environ 22 3 255 259 1:CAS:528:DyaK1MXjt1WrurY%3D (Pubitemid 29194625)
    • (1999) Plant, Cell and Environment , vol.22 , Issue.3 , pp. 255-259
    • Aubert, S.1    Hennion, F.2    Bouchereau, A.3    Gout, E.4    Bligny, R.5    Dorne, A.-J.6
  • 8
    • 68049100110 scopus 로고    scopus 로고
    • Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
    • 10.1038/Nchembio.186 1:CAS:528:DC%2BD1MXnslKqtLc%3D
    • BD Bennett EH Kimball M Gao R Osterhout SJ Van Dien JD Rabinowitz 2009 Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli Nat Chem Biol 5 8 593 599 10.1038/Nchembio.186 1:CAS:528:DC%2BD1MXnslKqtLc%3D
    • (2009) Nat Chem Biol , vol.5 , Issue.8 , pp. 593-599
    • Bennett, B.D.1    Kimball, E.H.2    Gao, M.3    Osterhout, R.4    Van Dien, S.J.5    Rabinowitz, J.D.6
  • 9
    • 77952891125 scopus 로고    scopus 로고
    • Metabolic flux distributions: Genetic information, computational predictions, and experimental validation
    • 10.1007/s00253-010-2506-6 1:CAS:528:DC%2BC3cXkslarsr4%3D
    • LM Blank L Kuepfer 2010 Metabolic flux distributions: genetic information, computational predictions, and experimental validation Appl Microbiol Biotechnol 86 5 1243 1255 10.1007/s00253-010-2506-6 1:CAS:528:DC%2BC3cXkslarsr4%3D
    • (2010) Appl Microbiol Biotechnol , vol.86 , Issue.5 , pp. 1243-1255
    • Blank, L.M.1    Kuepfer, L.2
  • 10
    • 34249088019 scopus 로고    scopus 로고
    • Sampling for metabolome analysis of microorganisms
    • DOI 10.1021/ac0623888
    • CJ Bolten P Kiefer F Letisse JC Portais C Wittmann 2007 Sampling for metabolome analysis of microorganisms Anal Chem 79 10 3843 3849 10.1021/ac0623888 1:CAS:528:DC%2BD2sXjvFKgtr0%3D (Pubitemid 46799081)
    • (2007) Analytical Chemistry , vol.79 , Issue.10 , pp. 3843-3849
    • Bolten, C.J.1    Kiefer, P.2    Letisse, F.3    Portais, J.-C.4    Wittmann, C.5
  • 11
    • 78449311334 scopus 로고    scopus 로고
    • Evaluation of peak picking quality in LC-MS metabolomics data
    • 10.1021/ac101216e 1:CAS:528:DC%2BC3cXhtleitbrO
    • L Brodsky A Moussaieff N Shahaf A Aharoni I Rogachev 2010 Evaluation of peak picking quality in LC-MS metabolomics data Anal Chem 82 22 9177 9187 10.1021/ac101216e 1:CAS:528:DC%2BC3cXhtleitbrO
    • (2010) Anal Chem , vol.82 , Issue.22 , pp. 9177-9187
    • Brodsky, L.1    Moussaieff, A.2    Shahaf, N.3    Aharoni, A.4    Rogachev, I.5
  • 12
    • 51649104270 scopus 로고    scopus 로고
    • Leakage-free rapid quenching technique for yeast metabolomics
    • 10.1007/s11306-008-0116-4 1:CAS:528:DC%2BD1cXhtVyis7bO
    • AB Canelas C Ras A ten Pierick JC van Dam JJ Heijnen WM Van Gulik 2008 Leakage-free rapid quenching technique for yeast metabolomics Metabolomics 4 3 226 239 10.1007/s11306-008-0116-4 1:CAS:528:DC%2BD1cXhtVyis7bO
    • (2008) Metabolomics , vol.4 , Issue.3 , pp. 226-239
    • Canelas, A.B.1    Ras, C.2    Ten Pierick, A.3    Van Dam, J.C.4    Heijnen, J.J.5    Van Gulik, W.M.6
  • 13
    • 69749110125 scopus 로고    scopus 로고
    • Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics
    • 10.1021/ac900999t 1:CAS:528:DC%2BD1MXptlelt7Y%3D
    • AB Canelas A ten Pierick C Ras RM Seifar JC van Dam WM van Gulik JJ Heijnen 2009 Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics Anal Chem 81 17 7379 7389 10.1021/ac900999t 1:CAS:528:DC%2BD1MXptlelt7Y%3D
    • (2009) Anal Chem , vol.81 , Issue.17 , pp. 7379-7389
    • Canelas, A.B.1    Ten Pierick, A.2    Ras, C.3    Seifar, R.M.4    Van Dam, J.C.5    Van Gulik, W.M.6    Heijnen, J.J.7
  • 14
    • 38049129627 scopus 로고    scopus 로고
    • Rates of chilling to 0 degrees C: Implications for the survival of microorganisms and relationship with membrane fluidity modifications
    • 10.1007/s00253-007-1279-z 1:CAS:528:DC%2BD1cXhsFSjt7g%3D
    • L Cao-Hoang F Dumont PA Marechal M Le-Thanh P Gervais 2008 Rates of chilling to 0 degrees C: implications for the survival of microorganisms and relationship with membrane fluidity modifications Appl Microbiol Biotechnol 77 6 1379 1387 10.1007/s00253-007-1279-z 1:CAS:528:DC%2BD1cXhsFSjt7g%3D
    • (2008) Appl Microbiol Biotechnol , vol.77 , Issue.6 , pp. 1379-1387
    • Cao-Hoang, L.1    Dumont, F.2    Marechal, P.A.3    Le-Thanh, M.4    Gervais, P.5
  • 15
    • 28244476895 scopus 로고    scopus 로고
    • Oxygen-limited fed-batch process: An alternative control for Pichia pastoris recombinant protein processes
    • DOI 10.1007/s00449-005-0005-4
    • T Charoenrat M Ketudat-Cairns H Stendahl-Andersen M Jahic SO Enfors 2005 Oxygen-limited fed-batch process: an alternative control for Pichia pastoris recombinant protein processes Bioprocess Biosyst Eng 27 6 399 406 10.1007/s00449-005-0005-4 1:CAS:528:DC%2BD2MXht1CqtL7N (Pubitemid 41703284)
    • (2005) Bioprocess and Biosystems Engineering , vol.27 , Issue.6 , pp. 399-406
    • Charoenrat, T.1    Ketudat-Cairns, M.2    Stendahl-Andersen, H.3    Jahic, M.4    Enfors, S.-O.5
  • 17
    • 77950630496 scopus 로고    scopus 로고
    • From fluxes and isotope labeling patterns towards in silico cells
    • 10.1016/j.copbio.2010.01.014 1:CAS:528:DC%2BC3cXjslSjtbk%3D
    • M Dauner 2010 From fluxes and isotope labeling patterns towards in silico cells Curr Opin Biotechnol 21 1 55 62 10.1016/j.copbio.2010.01.014 1:CAS:528:DC%2BC3cXjslSjtbk%3D
    • (2010) Curr Opin Biotechnol , vol.21 , Issue.1 , pp. 55-62
    • Dauner, M.1
  • 19
    • 0038606003 scopus 로고    scopus 로고
    • Production process monitoring by serial mapping of microbial carbon flux distributions using a novel sensor reactor approach: I - Sensor reactor system
    • DOI 10.1016/S1096-7176(03)00004-1
    • M El Massaoudi J Spelthahn A Drysch A de Graaf R Takors 2003 Production process monitoring by serial mapping of microbial carbon flux distributions using a novel Sensor Reactor approach: I-sensor reactor system Metab Eng 5 2 86 95 (Pubitemid 36837552)
    • (2003) Metabolic Engineering , vol.5 , Issue.2 , pp. 86-95
    • El Massaoudi, M.1    Spelthahn, J.2    Drysch, A.3    De Graaf, A.4    Takors, R.5
  • 20
    • 77954595080 scopus 로고    scopus 로고
    • Isotopologue profiling of Legionella pneumophila-role of serine and glucose as carbon substrates
    • 10.1074/jbc.M110.128678 1:CAS:528:DC%2BC3cXos1Wnsb0%3D
    • E Eylert V Herrmann M Jules N Gillmaier M Lautner C Buchrieser W Eisenreich K Heuner 2010 Isotopologue profiling of Legionella pneumophila-role of serine and glucose as carbon substrates J Biol Chem 285 29 22232 22243 10.1074/jbc.M110.128678 1:CAS:528:DC%2BC3cXos1Wnsb0%3D
    • (2010) J Biol Chem , vol.285 , Issue.29 , pp. 22232-22243
    • Eylert, E.1    Herrmann, V.2    Jules, M.3    Gillmaier, N.4    Lautner, M.5    Buchrieser, C.6    Eisenreich, W.7    Heuner, K.8
  • 21
    • 0036526245 scopus 로고    scopus 로고
    • 13C labeling and NMR spectroscopy
    • DOI 10.1006/mben.2001.0209
    • S Flores G Gosset N Flores AA de Graaf F Bolivar 2002 Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by C-13 labeling and NMR spectroscopy Metab Eng 4 2 124 137 10.1006/mben.2001.0209 1:CAS:528:DC%2BD38XjsFOht7s%3D (Pubitemid 35002950)
    • (2002) Metabolic Engineering , vol.4 , Issue.2 , pp. 124-137
    • Flores, S.1    Gosset, G.2    Flores, N.3    De Graaf, A.A.4    Bolivar, F.5
  • 22
  • 23
    • 34249896946 scopus 로고    scopus 로고
    • 13C isotopic enrichment of valine and threonine by GC-C-IRMS after formation of the N(O,S)-ethoxycarbonyl ethyl ester derivatives of the amino acids
    • DOI 10.1007/s00216-007-1275-2, Vapor Generation for Atomic Spectroscopy
    • JP Godin M Faure D Breuille G Hopfgartner LB Fay 2007 Determination of C-13 isotopic enrichment of valine and threonine by GC-C-IRMS after formation of the N(O, S)-ethoxycarbonyl ethyl ester derivatives of the amino acids Anal Bioanal Chem 388 4 909 918 10.1007/s00216-007-1275-2 1:CAS:528: DC%2BD2sXmvVGhurk%3D (Pubitemid 46870690)
    • (2007) Analytical and Bioanalytical Chemistry , vol.388 , Issue.4 , pp. 909-918
    • Godin, J.-P.1    Faure, M.2    Breuille, D.3    Hopfgartner, G.4    Fay, L.-B.5
  • 26
    • 77649255304 scopus 로고    scopus 로고
    • Metabolic turnover analysis by a combination of in vivo C-13-labelling from CO2-C-13 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C-3 photosynthetic pathway in Nicotiana tabacum leaves
    • 10.1093/Jxb/Erp374 1:CAS:528:DC%2BC3cXis1Wgu7o%3D
    • T Hasunuma K Harada SI Miyazawa A Kondo E Fukusaki C Miyake 2010 Metabolic turnover analysis by a combination of in vivo C-13-labelling from CO2-C-13 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C-3 photosynthetic pathway in Nicotiana tabacum leaves J Exp Bot 61 4 1041 1051 10.1093/Jxb/Erp374 1:CAS:528:DC%2BC3cXis1Wgu7o%3D
    • (2010) J Exp Bot , vol.61 , Issue.4 , pp. 1041-1051
    • Hasunuma, T.1    Harada, K.2    Miyazawa, S.I.3    Kondo, A.4    Fukusaki, E.5    Miyake, C.6
  • 27
    • 80052644981 scopus 로고    scopus 로고
    • Impact of thermodynamic principles in systems biology
    • 10.1007/10-2009-63 1:CAS:528:DC%2BC3cXhtlWjt77J
    • JJ Heijnen 2010 Impact of thermodynamic principles in systems biology Adv Biochem Eng Biotechnol 121 139 162 10.1007/10-2009-63 1:CAS:528: DC%2BC3cXhtlWjt77J
    • (2010) Adv Biochem Eng Biotechnol , vol.121 , pp. 139-162
    • Heijnen, J.J.1
  • 28
    • 77955169879 scopus 로고    scopus 로고
    • Nontargeted elucidation of metabolic pathways using stable-isotope tracers and mass spectrometry
    • 10.1021/ac1011574 1:CAS:528:DC%2BC3cXosVyjsLw%3D
    • K Hiller CM Metallo JK Kelleher G Stephanopoulos 2010 Nontargeted elucidation of metabolic pathways using stable-isotope tracers and mass spectrometry Anal Chem 82 15 6621 6628 10.1021/ac1011574 1:CAS:528: DC%2BC3cXosVyjsLw%3D
    • (2010) Anal Chem , vol.82 , Issue.15 , pp. 6621-6628
    • Hiller, K.1    Metallo, C.M.2    Kelleher, J.K.3    Stephanopoulos, G.4
  • 30
    • 0037908691 scopus 로고    scopus 로고
    • Metabolic isotopomer labeling systems. Part II: Structural flux identifiability analysis
    • DOI 10.1016/S0025-5564(02)00222-5
    • N Isermann W Wiechert 2003 Metabolic isotopomer labeling systems: part II. Structural flux identifiability analysis Math Biosci 183 2 175 214 1:CAS:528:DC%2BD3sXjtVCqsbs%3D (Pubitemid 36597451)
    • (2003) Mathematical Biosciences , vol.183 , Issue.2 , pp. 175-214
    • Isermann, N.1    Wiechert, W.2
  • 32
    • 33845675054 scopus 로고    scopus 로고
    • Determination of metabolic flux changes during fed-batch cultivation from measurements of intracellular amino acids by LC-MS/MS
    • DOI 10.1016/j.jbiotec.2006.09.004, PII S0168165606007577
    • S Iwatani S Van Dien K Shimbo K Kubota N Kageyama D Iwahata H Miyano K Hirayama Y Usuda K Shimizu K Matsui 2007 Determination of metabolic flux changes during fed-batch cultivation from measurements of intracellular amino acids by LC-MS/MS J Biotechnol 128 1 93 111 10.1016/j.jbiotec.2006.09.004 1:CAS:528:DC%2BD2sXhsFWrsw%3D%3D (Pubitemid 44960516)
    • (2007) Journal of Biotechnology , vol.128 , Issue.1 , pp. 93-111
    • Iwatani, S.1    Van Dien, S.2    Shimbo, K.3    Kubota, K.4    Kageyama, N.5    Iwahata, D.6    Miyano, H.7    Hirayama, K.8    Usuda, Y.9    Shimizu, K.10    Matsui, K.11
  • 33
    • 33751368850 scopus 로고    scopus 로고
    • Ion suppression: A major concern in mass spectrometry
    • LL Jessome DA Volmer 2006 Ion suppression: a major concern in mass spectrometry LCGC N Am 24 5 498 510 1:CAS:528:DC%2BD28XksFGqu7c%3D (Pubitemid 43886105)
    • (2006) LC-GC North America , vol.24 , Issue.5 , pp. 498-510
    • Jessome, L.L.1    Volmer, D.A.2
  • 34
    • 0030034873 scopus 로고    scopus 로고
    • Effect of channelling on the concentration of bulk-phase intermediates as cytosolic proteins become more concentrated
    • 1:CAS:528:DyaK28XhtV2itbo%3D
    • BN Kholodenko HV Westerhoff M Cascante 1996 Effect of channelling on the concentration of bulk-phase intermediates as cytosolic proteins become more concentrated Biochem J 313 Pt 3 921 926 1:CAS:528:DyaK28XhtV2itbo%3D
    • (1996) Biochem J , vol.313 , Issue.PART 3 , pp. 921-926
    • Kholodenko, B.N.1    Westerhoff, H.V.2    Cascante, M.3
  • 35
    • 0033585824 scopus 로고    scopus 로고
    • Metabolite and isotopomer balancing in the analysis of metabolic cycles: I. Theory
    • DOI 10.1002/(SICI)1097-0290(19990220)62:4<375::AID-BIT1>3.0.CO;2-O
    • MI Klapa SM Park AJ Sinskey G Stephanopoulos 1999 Metabolite and isotopomer balancing in the analysis of metabolic cycles: I. Theory Biotechnol Bioeng 62 4 375 391 1:CAS:528:DyaK1MXns1Wmtg%3D%3D (Pubitemid 29052873)
    • (1999) Biotechnology and Bioengineering , vol.62 , Issue.4 , pp. 375-391
    • Klapa, M.I.1    Park, S.M.2    Sinskey, A.J.3    Stephanopoulos, G.4
  • 37
    • 33846995458 scopus 로고    scopus 로고
    • Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data
    • 10.1111/j.1567-1364.2006.00180.x 1:CAS:528:DC%2BD2sXjsVyqtrc%3D
    • RJ Kleijn JM Geertman BK Nfor C Ras D Schipper JT Pronk JJ Heijnen AJ van Maris WA van Winden 2007 Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data FEMS Yeast Res 7 2 216 231 10.1111/j.1567-1364.2006.00180.x 1:CAS:528:DC%2BD2sXjsVyqtrc%3D
    • (2007) FEMS Yeast Res , vol.7 , Issue.2 , pp. 216-231
    • Kleijn, R.J.1    Geertman, J.M.2    Nfor, B.K.3    Ras, C.4    Schipper, D.5    Pronk, J.T.6    Heijnen, J.J.7    Van Maris, A.J.8    Van Winden, W.A.9
  • 38
    • 79551712199 scopus 로고    scopus 로고
    • Metabolomic approaches toward understanding nitrogen metabolism in plants
    • 10.1093/jxb/erq417 1:CAS:528:DC%2BC3MXhs1Gjsbc%3D
    • M Kusano A Fukushima H Redestig K Saito 2011 Metabolomic approaches toward understanding nitrogen metabolism in plants J Exp Bot 62 4 1439 1453 10.1093/jxb/erq417 1:CAS:528:DC%2BC3MXhs1Gjsbc%3D
    • (2011) J Exp Bot , vol.62 , Issue.4 , pp. 1439-1453
    • Kusano, M.1    Fukushima, A.2    Redestig, H.3    Saito, K.4
  • 39
    • 0035813391 scopus 로고    scopus 로고
    • Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae
    • DOI 10.1002/bit.10054
    • HC Lange JJ Heijnen 2001 Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae Biotechnol Bioeng 75 3 334 344 10.1002/bit.10054 1:CAS:528:DC%2BD3MXnvFSisLk%3D (Pubitemid 33000727)
    • (2001) Biotechnology and Bioengineering , vol.75 , Issue.3 , pp. 334-344
    • Lange, H.C.1    Heijnen, J.J.2
  • 41
    • 77957332169 scopus 로고    scopus 로고
    • Tracer-based metabolomics: Concepts and practices
    • 10.1016/j.clinbiochem.2010.07.027 1:CAS:528:DC%2BC3cXht1KrtbjM
    • WNP Lee PN Wahjudi J Xu VL Go 2010 Tracer-based metabolomics: concepts and practices Clin Biochem 43 16-17 1269 1277 10.1016/j.clinbiochem.2010.07.027 1:CAS:528:DC%2BC3cXht1KrtbjM
    • (2010) Clin Biochem , vol.43 , Issue.1617 , pp. 1269-1277
    • Lee, W.N.P.1    Wahjudi, P.N.2    Xu, J.3    Go, V.L.4
  • 42
    • 51649128997 scopus 로고    scopus 로고
    • Leakage of adenylates during cold methanol/glycerol quenching of Escherichia coli
    • 10.1007/s11306-008-0114-6 1:CAS:528:DC%2BD1cXhtVyis7nF
    • H Link B Anselment D Weuster-Botz 2008 Leakage of adenylates during cold methanol/glycerol quenching of Escherichia coli Metabolomics 4 3 240 247 10.1007/s11306-008-0114-6 1:CAS:528:DC%2BD1cXhtVyis7nF
    • (2008) Metabolomics , vol.4 , Issue.3 , pp. 240-247
    • Link, H.1    Anselment, B.2    Weuster-Botz, D.3
  • 43
    • 33947503169 scopus 로고    scopus 로고
    • Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry
    • DOI 10.1016/j.chroma.2007.02.034, PII S0021967307002907
    • B Luo K Grönke R Takors C Wandrey M Oldiges 2007 Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry J Chromatogr A 1147 2 153 164 10.1016/j.chroma.2007.02.034 1:CAS:528:DC%2BD2sXjslGrt7o%3D (Pubitemid 46466829)
    • (2007) Journal of Chromatography A , vol.1147 , Issue.2 , pp. 153-164
    • Luo, B.1    Groenke, K.2    Takors, R.3    Wandrey, C.4    Oldiges, M.5
  • 44
    • 44449177159 scopus 로고    scopus 로고
    • 13C-labeling experiments: Part II. Flux estimation
    • DOI 10.1002/bit.21746
    • 13C-labeling experiments: part II. Flux estimation Biotechnol Bioeng 100 2 355 370 10.1002/bit.21746 1:CAS:528:DC%2BD1cXlslCkt74%3D (Pubitemid 351758177)
    • (2008) Biotechnology and Bioengineering , vol.100 , Issue.2 , pp. 355-370
    • Maier, K.1    Hofmann, U.2    Reuss, M.3    Mauch, K.4
  • 46
    • 75949123498 scopus 로고    scopus 로고
    • Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling
    • 10.1104/pp.109.151316 1:CAS:528:DC%2BC3cXmsFegtr0%3D
    • SK Masakapalli P Le Lay JE Huddleston NL Pollock NJ Kruger RG Ratcliffe 2010 Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling Plant Physiol 152 2 602 619 10.1104/pp.109.151316 1:CAS:528:DC%2BC3cXmsFegtr0%3D
    • (2010) Plant Physiol , vol.152 , Issue.2 , pp. 602-619
    • Masakapalli, S.K.1    Le Lay, P.2    Huddleston, J.E.3    Pollock, N.L.4    Kruger, N.J.5    Ratcliffe, R.G.6
  • 47
    • 4243829380 scopus 로고    scopus 로고
    • Bidirectional reaction steps in metabolic networks: IV. Optimal design of isotopomer labeling experiments
    • DOI 10.1002/(SICI)1097-0290(1999)66:2<86::AID-BIT2>3.0.CO;2-A
    • M Möllney W Wiechert D Kownatzki AA de Graaf 1999 Bidirectional reaction steps in metabolic networks: IV. Optimal design of isotopomer labeling experiments Biotechnol Bioeng 66 2 86 103 (Pubitemid 32262269)
    • (1999) Biotechnology and Bioengineering , vol.66 , Issue.2 , pp. 86-103
    • Mollney, M.1    Wiechert, W.2    Kownatzki, D.3    De Graaf, A.A.4
  • 48
    • 53649110425 scopus 로고    scopus 로고
    • Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy
    • 10.1038/Nbt.1500 1:CAS:528:DC%2BD1cXht1aisrrM
    • J Munger BD Bennett A Parikh XJ Feng J McArdle HA Rabitz T Shenk JD Rabinowitz 2008 Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy Nat Biotechnol 26 10 1179 1186 10.1038/Nbt.1500 1:CAS:528:DC%2BD1cXht1aisrrM
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1179-1186
    • Munger, J.1    Bennett, B.D.2    Parikh, A.3    Feng, X.J.4    McArdle, J.5    Rabitz, H.A.6    Shenk, T.7    Rabinowitz, J.D.8
  • 50
    • 33846849309 scopus 로고    scopus 로고
    • A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics
    • DOI 10.1186/1471-2105-7-540
    • IE Nikerel WA van Winden WM van Gulik JJ Heijnen 2006 A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics BMC Bioinforma 7 540 10.1186/1471-2105-7- 540 (Pubitemid 46210272)
    • (2006) BMC Bioinformatics , vol.7 , pp. 540
    • Nikerel, I.E.1    Van Winden, W.A.2    Van Gulik, W.M.3    Heijnen, J.J.4
  • 51
    • 77950628238 scopus 로고    scopus 로고
    • Metabolic flux analysis in eukaryotes
    • 10.1016/j.copbio.2010.01.011 1:CAS:528:DC%2BC3cXjslSjtbc%3D
    • J Niklas K Schneider E Heinzle 2010 Metabolic flux analysis in eukaryotes Curr Opin Biotechnol 21 1 63 69 10.1016/j.copbio.2010.01.011 1:CAS:528:DC%2BC3cXjslSjtbc%3D
    • (2010) Curr Opin Biotechnol , vol.21 , Issue.1 , pp. 63-69
    • Niklas, J.1    Schneider, K.2    Heinzle, E.3
  • 52
    • 0024962302 scopus 로고
    • Analysis of a framework using material balances in metabolic pathways to elucidate cellular-metabolism
    • 1:CAS:528:DyaL1MXltlamtrw%3D
    • SC Niranjan KY San 1989 Analysis of a framework using material balances in metabolic pathways to elucidate cellular-metabolism Biotechnol Bioeng 34 4 496 501 1:CAS:528:DyaL1MXltlamtrw%3D
    • (1989) Biotechnol Bioeng , vol.34 , Issue.4 , pp. 496-501
    • Niranjan, S.C.1    San, K.Y.2
  • 53
    • 79958703818 scopus 로고    scopus 로고
    • 13C-MFA: A comparison using a consistent dataset
    • doi: 10.1016/j.jbiotec.2010.07.008
    • 13C-MFA: a comparison using a consistent dataset. J Biotechnol. doi: 10.1016/j.jbiotec.2010.07.008
    • (2010) J Biotechnol
    • Noack S, N.1
  • 54
    • 33744455445 scopus 로고    scopus 로고
    • 13C labeling experiments
    • 10.1002/bit.20803
    • 13C labeling experiments Biotechnol Bioeng 94 2 234 251 10.1002/bit.20803
    • (2006) Biotechnol Bioeng , vol.94 , Issue.2 , pp. 234-251
    • Nöh, K.1    Wiechert, W.2
  • 55
    • 33749448867 scopus 로고    scopus 로고
    • 13C labeling experiments under metabolic steady state conditions
    • DOI 10.1016/j.ymben.2006.05.006, PII S1096717606000449
    • 13C labeling experiments under metabolic steady state conditions Metab Eng 8 6 554 577 10.1016/j.ymben.2006.05.006 (Pubitemid 44512159)
    • (2006) Metabolic Engineering , vol.8 , Issue.6 , pp. 554-577
    • Noh, K.1    Wahl, A.2    Wiechert, W.3
  • 57
    • 38349189124 scopus 로고    scopus 로고
    • Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS
    • 10.1039/b714176a 1:CAS:528:DC%2BD1cXovFKmsw%3D%3D
    • Y Ohashi A Hirayama T Ishikawa S Nakamura K Shimizu Y Ueno M Tomita T Soga 2008 Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS Mol Biosyst 4 2 135 147 10.1039/b714176a 1:CAS:528: DC%2BD1cXovFKmsw%3D%3D
    • (2008) Mol Biosyst , vol.4 , Issue.2 , pp. 135-147
    • Ohashi, Y.1    Hirayama, A.2    Ishikawa, T.3    Nakamura, S.4    Shimizu, K.5    Ueno, Y.6    Tomita, M.7    Soga, T.8
  • 58
    • 17144388277 scopus 로고    scopus 로고
    • Applying metabolic profiling techniques for stimulus-response experiments: Chances and pitfalls
    • DOI 10.1007/b98913, Technology Transfer in Biotechnology: From lab to Industry to Production
    • M Oldiges R Takors 2005 Applying metabolic profiling techniques for stimulus-response experiments: chances and pitfalls Adv Biochem Eng Biotechnol 92 173 196 1:CAS:528:DC%2BD2MXktlertLw%3D (Pubitemid 44617158)
    • (2005) Advances in Biochemical Engineering/Biotechnology , vol.92 , pp. 173-196
    • Oldiges, M.1    Takors, R.2
  • 59
    • 34548025085 scopus 로고    scopus 로고
    • Metabolomics: Current state and evolving methodologies and tools
    • DOI 10.1007/s00253-007-1029-2
    • M Oldiges S Lütz S Pflug K Schroer N Stein C Wiendahl 2007 Metabolomics: current state and evolving methodologies and tools Appl Microbiol Biotechnol 76 3 495 511 10.1007/s00253-007-1029-2 1:CAS:528:DC%2BD2sXpt1ahsbs%3D (Pubitemid 47283107)
    • (2007) Applied Microbiology and Biotechnology , vol.76 , Issue.3 , pp. 495-511
    • Oldiges, M.1    Lutz, S.2    Pflug, S.3    Schroer, K.4    Stein, N.5    Wiendahl, C.6
  • 60
    • 0033991699 scopus 로고    scopus 로고
    • Macromolecular compartmentation and channeling
    • J Ovadi PA Srere 2000 Macromolecular compartmentation and channeling Int Rev Cytol 192 255 280 1:CAS:528:DC%2BD3cXlsVSqsg%3D%3D (Pubitemid 29501955)
    • (1999) International Review of Cytology , vol.192 , pp. 255-280
    • Ovadi, J.1    Srere, P.A.2
  • 61
    • 0033585823 scopus 로고    scopus 로고
    • Metabolite and isotopomer balancing in the analysis of metabolic cycles: II. Applications
    • DOI 10.1002/(SICI)1097-0290(19990220)62:4<392::AID-BIT2>3.0.CO;2-S
    • SM Park MI Klapa AJ Sinskey G Stephanopoulos 1999 Metabolite and isotopomer balancing in the analysis of metabolic cycles: II. Applications Biotechnol Bioeng 62 4 392 401 1:CAS:528:DyaK1MXns1aiuw%3D%3D (Pubitemid 29052874)
    • (1999) Biotechnology and Bioengineering , vol.62 , Issue.4 , pp. 392-401
    • Park, S.M.1    Klapa, M.I.2    Sinskey, A.J.3    Stephanopoulos, G.4
  • 62
    • 33947431021 scopus 로고    scopus 로고
    • Analysis of amino acid isotopomers using FT-ICR MS
    • DOI 10.1021/ac061906b
    • F Pingitore Y Tang GH Kruppa JD Keasling 2007 Analysis of amino acid isotopomers using FT-ICR MS Anal Chem 79 6 2483 2490 10.1021/ac061906b 1:CAS:528:DC%2BD2sXhslOrsrg%3D (Pubitemid 46449030)
    • (2007) Analytical Chemistry , vol.79 , Issue.6 , pp. 2483-2490
    • Pingitore, F.1    Tang, Y.2    Kruppa, G.H.3    Keasling, J.D.4
  • 63
    • 66749140138 scopus 로고    scopus 로고
    • ReMatch: A web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis
    • doi: 10.2390/biecoll-jib-2008-102
    • Pitkänen E, Akerlund A, Rantanen A, Jouhten P, Ukkonen E (2008) ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. J Integr Bioinform 5(2). doi: 10.2390/biecoll-jib-2008-102
    • (2008) J Integr Bioinform , vol.5 , Issue.2
    • Pitkänen E, A.1
  • 64
    • 0032552815 scopus 로고    scopus 로고
    • Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model
    • DOI 10.1002/(SICI)1097-0290(19981020)60:2<230::AID-BIT10>3.0.CO;2-Q
    • J Pramanik JD Keasling 1998 Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model Biotechnol Bioeng 60 2 230 238 1:CAS:528:DyaK1cXmt1Ggur4%3D (Pubitemid 28432366)
    • (1998) Biotechnology and Bioengineering , vol.60 , Issue.2 , pp. 230-238
    • Pramanik, J.1    Keasling, J.D.2
  • 65
    • 66949164842 scopus 로고    scopus 로고
    • OpenFLUX: Efficient modelling software for C-13-based metabolic flux analysis
    • 10.1186/1475-2859-8-25
    • LE Quek C Wittmann LK Nielsen JO Kromer 2009 OpenFLUX: efficient modelling software for C-13-based metabolic flux analysis Microbial Cell Factories 8 25 10.1186/1475-2859-8-25
    • (2009) Microbial Cell Factories , vol.8 , pp. 25
    • Quek, L.E.1    Wittmann, C.2    Nielsen, L.K.3    Kromer, J.O.4
  • 66
    • 78650301750 scopus 로고    scopus 로고
    • CE-MS for metabolomics: Developments and applications in the period 2008-2010
    • 10.1002/elps.201000378 1:CAS:528:DC%2BC3cXhsFyjtrvE
    • R Ramautar OA Mayboroda GW Somsen GJ de Jong 2011 CE-MS for metabolomics: developments and applications in the period 2008-2010 Electrophoresis 32 1 52 65 10.1002/elps.201000378 1:CAS:528:DC%2BC3cXhsFyjtrvE
    • (2011) Electrophoresis , vol.32 , Issue.1 , pp. 52-65
    • Ramautar, R.1    Mayboroda, O.A.2    Somsen, G.W.3    De Jong, G.J.4
  • 68
    • 79954459893 scopus 로고    scopus 로고
    • Construction of an E. coli genome-scale atom mapping model for MFA calculations
    • doi: 10.1002/bit.23070
    • Ravikirthi P, Suthers PF, Maranas CD (2011) Construction of an E. coli genome-scale atom mapping model for MFA calculations. Biotechnol Bioeng. doi: 10.1002/bit.23070
    • (2011) Biotechnol Bioeng
    • Ravikirthi, P.1    Suthers, P.F.2    Maranas, C.D.3
  • 69
    • 33846061120 scopus 로고    scopus 로고
    • 13C-based flux analysis
    • DOI 10.1038/msb4100109, PII MSB4100109
    • Sauer U (2006) Metabolic networks in motion: C-13-based flux analysis. Mol Syst Biol. doi: 10.1038/Msb4100109 (Pubitemid 46061084)
    • (2006) Molecular Systems Biology , vol.2 , pp. 62
    • Sauer, U.1
  • 70
    • 53649107567 scopus 로고    scopus 로고
    • From biomarkers to integrated network responses
    • 10.1038/nbt1008-1090 1:CAS:528:DC%2BD1cXht1aisr%2FL
    • U Sauer N Zamboni 2008 From biomarkers to integrated network responses Nat Biotechnol 26 10 1090 1092 10.1038/nbt1008-1090 1:CAS:528: DC%2BD1cXht1aisr%2FL
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1090-1092
    • Sauer, U.1    Zamboni, N.2
  • 71
    • 67349204820 scopus 로고    scopus 로고
    • Rapid sampling devices for metabolic engineering applications
    • 10.1007/s00253-009-1976-x
    • F Schädel E Franco-Lara 2009 Rapid sampling devices for metabolic engineering applications Appl Microbiol Biotechnol 83 2 199 208 10.1007/s00253-009-1976-x
    • (2009) Appl Microbiol Biotechnol , vol.83 , Issue.2 , pp. 199-208
    • Schädel, F.1    Franco-Lara, E.2
  • 72
    • 0033562562 scopus 로고    scopus 로고
    • Automated sampling device for monitoring intracellular metabolite dynamics
    • DOI 10.1006/abio.1999.4048
    • U Schaefer W Boos R Takors D Weuster-Botz 1999 Automated sampling device for monitoring intracellular metabolite dynamics Anal Biochem 270 1 88 96 1:CAS:528:DyaK1MXjtVekur4%3D (Pubitemid 29230724)
    • (1999) Analytical Biochemistry , vol.270 , Issue.1 , pp. 88-96
    • Schaefer, U.1    Boos, W.2    Takors, R.3    Weuster-Botz, D.4
  • 74
    • 0343471424 scopus 로고    scopus 로고
    • Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices
    • DOI 10.1002/(SICI)1097-0290(19970920)55:6<831::AID-BIT2>3.0.CO;2-H
    • K Schmidt M Carlsen J Nielsen J Villadsen 1997 Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices Biotechnol Bioeng 55 6 831 840 1:CAS:528:DyaK2sXlslaqsr8%3D (Pubitemid 27360504)
    • (1997) Biotechnology and Bioengineering , vol.55 , Issue.6 , pp. 831-840
    • Schmidt, K.1    Carlsen, M.2    Nielsen, J.3    Villadsen, J.4
  • 75
    • 42249096434 scopus 로고    scopus 로고
    • Metabolic flux analysis as a tool in metabolic engineering of plants
    • 10.1016/j.copbio.2008.02.006 1:CAS:528:DC%2BD1cXlslKis7k%3D
    • J Schwender 2008 Metabolic flux analysis as a tool in metabolic engineering of plants Curr Opin Biotech 19 2 131 137 10.1016/j.copbio.2008.02. 006 1:CAS:528:DC%2BD1cXlslKis7k%3D
    • (2008) Curr Opin Biotech , vol.19 , Issue.2 , pp. 131-137
    • Schwender, J.1
  • 76
    • 34547657059 scopus 로고    scopus 로고
    • 13C metabolic flux analysis of photoautotrophic microorganisms
    • DOI 10.1016/j.phytochem.2007.03.042, PII S0031942207002166
    • 13C metabolic flux analysis of photoautotrophic microorganisms Phytochemistry 68 16-18 2302 2312 10.1016/j.phytochem.2007.03.042 1:CAS:528:DC%2BD2sXovFynsr0%3D (Pubitemid 47211185)
    • (2007) Phytochemistry , vol.68 , Issue.16-18 , pp. 2302-2312
    • Shastri, A.A.1    Morgan, J.A.2
  • 77
    • 22144471210 scopus 로고    scopus 로고
    • 2 in intact Escherichia coli
    • DOI 10.1111/j.1742-4658.2005.04712.x
    • 2 in intact Escherichia coli FEBS J 272 13 3260 3269 10.1111/j.1742-4658.2005.04712.x 1:CAS:528:DC%2BD2MXmtFKrtb8%3D (Pubitemid 40979299)
    • (2005) FEBS Journal , vol.272 , Issue.13 , pp. 3260-3269
    • Shearer, G.1    Lee, J.C.2    Koo, J.-A.3    Kohl, D.H.4
  • 80
    • 76749140314 scopus 로고    scopus 로고
    • Improved computational performance of MFA using elementary metabolite units and flux coupling
    • 10.1016/j.ymben.2009.10.002 1:CAS:528:DC%2BC3cXit1Omuro%3D
    • PF Suthers YJ Chang CD Maranas 2010 Improved computational performance of MFA using elementary metabolite units and flux coupling Metab Eng 12 2 123 128 10.1016/j.ymben.2009.10.002 1:CAS:528:DC%2BC3cXit1Omuro%3D
    • (2010) Metab Eng , vol.12 , Issue.2 , pp. 123-128
    • Suthers, P.F.1    Chang, Y.J.2    Maranas, C.D.3
  • 81
    • 0029146299 scopus 로고
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • 1:CAS:528:DyaK2MXotlGis74%3D
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism Eur J Biochem 232 2 433 448 1:CAS:528:DyaK2MXotlGis74%3D
    • (1995) Eur J Biochem , vol.232 , Issue.2 , pp. 433-448
    • Szyperski, T.1
  • 82
    • 58349085312 scopus 로고    scopus 로고
    • Development and application of a differential method for reliable metabolome analysis in Escherichia coli
    • 10.1016/j.ab.2008.11.018 1:CAS:528:DC%2BD1MXhtFenur8%3D
    • H Taymaz-Nikerel M de Mey C Ras A ten Pierick RM Seifar JC van Dam JJ Heijnen WM van Gulik 2009 Development and application of a differential method for reliable metabolome analysis in Escherichia coli Anal Biochem 386 1 9 19 10.1016/j.ab.2008.11.018 1:CAS:528:DC%2BD1MXhtFenur8%3D
    • (2009) Anal Biochem , vol.386 , Issue.1 , pp. 9-19
    • Taymaz-Nikerel, H.1    De Mey, M.2    Ras, C.3    Ten Pierick, A.4    Seifar, R.M.5    Van Dam, J.C.6    Heijnen, J.J.7    Van Gulik, W.M.8
  • 83
    • 0027380246 scopus 로고
    • In vivo analysis of glucose-induced fast changes in yeast adenine nucleotide pool applying a rapid sampling technique
    • DOI 10.1006/abio.1993.1452
    • U Theobald W Mailinger M Reuss M Rizzi 1993 In-vivo analysis of glucose-induced fast changes in yeast adenine-nucleotide pool applying a rapid sampling technique Anal Biochem 214 1 31 37 1:CAS:528:DyaK3sXms1Gltb4%3D (Pubitemid 23300349)
    • (1993) Analytical Biochemistry , vol.214 , Issue.1 , pp. 31-37
    • Theobald, U.1    Mailinger, W.2    Reuss, M.3    Rizzi, M.4
  • 84
    • 0343471961 scopus 로고    scopus 로고
    • In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations
    • DOI 10.1002/(SICI)1097-0290(19970720)55:2<305::AID-BIT8>3.0.CO;2-M
    • U Theobald W Mailinger M Baltes M Rizzi M Reuss 1997 In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations Biotechnol Bioeng 55 2 305 316 1:CAS:528:DyaK2sXksFCrurw%3D (Pubitemid 27291199)
    • (1997) Biotechnology and Bioengineering , vol.55 , Issue.2 , pp. 305-316
    • Theobald, U.1    Mailinger, W.2    Baltes, M.3    Rizzi, M.4    Reuss, M.5
  • 85
    • 34447276204 scopus 로고    scopus 로고
    • Direct measurement of isotopomer of intracellular metabolites using capillary electrophoresis time-of-flight mass spectrometry for efficient metabolic flux analysis
    • DOI 10.1016/j.chroma.2007.04.011, PII S0021967307006760
    • Y Toya N Ishii T Hirasawa M Naba K Hirai K Sugawara S Igarashi K Shimizu M Tomita T Soga 2007 Direct measurement of isotopomer of intracellular metabolites using capillary electrophoresis time-of-flight mass spectrometry for efficient metabolic flux analysis J Chromatogr A 1159 1-2 134 141 10.1016/j.chroma.2007.04.011 1:CAS:528:DC%2BD2sXnslGgt7k%3D (Pubitemid 47048250)
    • (2007) Journal of Chromatography A , vol.1159 , Issue.1-2 , pp. 134-141
    • Toya, Y.1    Ishii, N.2    Hirasawa, T.3    Naba, M.4    Hirai, K.5    Sugawara, K.6    Igarashi, S.7    Shimizu, K.8    Tomita, M.9    Soga, T.10
  • 86
    • 34547786580 scopus 로고    scopus 로고
    • 13C NMR determines metabolic fluxes and steady state in linseed embryos
    • DOI 10.1016/j.phytochem.2007.04.018, PII S0031942207002774
    • S Troufflard A Roscher B Thomasset JN Barbotin S Rawsthorne JC Portais 2007 In vivo C-13 NMR determines metabolic fluxes and steady state in, linseed embryos Phytochemistry 68 16-18 2341 2350 10.1016/j.phytochem.2007.04.018 1:CAS:528:DC%2BD2sXovFynsrk%3D (Pubitemid 47224959)
    • (2007) Phytochemistry , vol.68 , Issue.16-18 , pp. 2341-2350
    • Troufflard, S.1    Roscher, A.2    Thomasset, B.3    Barbotin, J.-N.4    Rawsthorne, S.5    Portais, J.-C.6
  • 87
    • 0027572102 scopus 로고
    • Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction
    • JJ Vallino G Stephanopoulos 1993 Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction Biotechnol Bioeng 41 6 633 646 10.1002/bit.260410606 1:CAS:528:DyaK3sXhs1Omsr0%3D (Pubitemid 23067907)
    • (1993) Biotechnology and Bioengineering , vol.41 , Issue.6 , pp. 633-646
    • Vallino, J.J.1    Stephanopoulos, G.2
  • 88
    • 34548605361 scopus 로고    scopus 로고
    • Microbial metabolomics: Toward a platform with full metabolome coverage
    • DOI 10.1016/j.ab.2007.07.022, PII S0003269707004782
    • MJ van der Werf KM Overkamp B Muilwijk L Coulier T Hankemeier 2007 Microbial metabolomics: toward a platform with full metabolome coverage Anal Biochem 370 1 17 25 10.1016/j.ab.2007.07.022 (Pubitemid 47404495)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 17-25
    • Werf, M.J.V.D.1    Overkamp, K.M.2    Muilwijk, B.3    Coulier, L.4    Hankemeier, T.5
  • 89
    • 77950629593 scopus 로고    scopus 로고
    • Fast sampling for quantitative microbial metabolomics
    • 10.1016/j.copbio.2010.01.008
    • WM van Gulik 2010 Fast sampling for quantitative microbial metabolomics Curr Opin Biotechnol 21 1 27 34 10.1016/j.copbio.2010.01.008
    • (2010) Curr Opin Biotechnol , vol.21 , Issue.1 , pp. 27-34
    • Van Gulik, W.M.1
  • 92
    • 0028108519 scopus 로고
    • Metabolic flux balancing-basic concepts, scientific and practical use
    • 1:CAS:528:DyaK2MXhtFansL0%3D
    • A Varma BO Palsson 1994 Metabolic flux balancing-basic concepts, scientific and practical use Bio-Technol 12 10 994 998 1:CAS:528: DyaK2MXhtFansL0%3D
    • (1994) Bio-Technol , vol.12 , Issue.10 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 93
    • 34548644070 scopus 로고    scopus 로고
    • Cold glycerol-saline: The promising quenching solution for accurate intracellular metabolite analysis of microbial cells
    • DOI 10.1016/j.ab.2007.06.028, PII S0003269707004022
    • SG Villas-Boas P Bruheim 2007 Cold glycerol-saline: the promising quenching solution for accurate intracellular metabolite analysis of microbial cells Anal Biochem 370 1 87 97 10.1016/j.ab.2007.06.028 1:CAS:528: DC%2BD2sXhtVOmur3I (Pubitemid 47404490)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 87-97
    • Villas-Boas, S.G.1    Bruheim, P.2
  • 95
  • 96
    • 33746623003 scopus 로고    scopus 로고
    • Unravelling the regulatory structure of biochemical networks using stimulus response experiments and large-scale model selection
    • DOI 10.1049/ip-syb:20050089
    • SA Wahl MD Haunschild M Oldiges W Wiechert 2006 Unravelling the regulatory structure of biochemical networks using stimulus response experiments and large-scale model selection IEE Proc Syst Biol 153 4 275 285 10.1049/ip-syb:20050089 1:STN:280:DC%2BD28rmtFWqtw%3D%3D (Pubitemid 44151487)
    • (2006) IEE Proceedings: Systems Biology , vol.153 , Issue.4 , pp. 275-285
    • Wahl, S.A.1    Haunschild, M.D.2    Oldiges, M.3    Wiechert, W.4
  • 97
    • 43149099413 scopus 로고    scopus 로고
    • 13C labeling experiments at metabolic nonstationary conditions: An exploratory study
    • DOI 10.1186/1471-2105-9-152
    • 13C labeling experiments at metabolic nonstationary conditions: an exploratory study BMC Bioinforma 9 152 10.1186/1471-2105-9-152 (Pubitemid 351639555)
    • (2008) BMC Bioinformatics , vol.9 , pp. 152
    • Wahl, S.A.1    Noh, K.2    Wiechert, W.3
  • 98
    • 41049107411 scopus 로고    scopus 로고
    • The topology of metabolic isotope labeling networks
    • DOI 10.1186/1471-2105-8-315
    • M Weitzel W Wiechert K Nöh 2007 The topology of metabolic isotope labeling networks BMC Bioinforma 8 315 10.1186/1471-2105-8-315 (Pubitemid 351659007)
    • (2007) BMC Bioinformatics , vol.8 , pp. 315
    • Weitzel, M.1    Wiechert, W.2    Noh, K.3
  • 99
    • 0028304634 scopus 로고
    • Metabolic channeling versus free diffusion: Transition-time analysis
    • DOI 10.1016/0968-0004(94)90019-1
    • GR Welch JS Easterby 1994 Metabolic channeling versus free diffusion: transition-time analysis Trends Biochem Sci 19 5 193 197 1:CAS:528: DyaK2MXhsVejsg%3D%3D (Pubitemid 24187239)
    • (1994) Trends in Biochemical Sciences , vol.19 , Issue.5 , pp. 193-197
    • Welch, G.R.1    Easterby, J.S.2
  • 100
    • 0034741983 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • DOI 10.1006/mben.2001.0187
    • 13C metabolic flux analysis Metab Eng 3 3 195 206 10.1006/mben.2001.0187 1:CAS:528:DC%2BD3MXlt1Cls78%3D (Pubitemid 32748163)
    • (2001) Metabolic Engineering , vol.3 , Issue.3 , pp. 195-206
    • Wiechert, W.1
  • 101
    • 0036371291 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • 1:CAS:528:DC%2BD3sXit1Ortbg%3D
    • 13C metabolic flux analysis Genet Eng (N Y) 24 215 238 1:CAS:528:DC%2BD3sXit1Ortbg%3D
    • (2002) Genet Eng (N Y) , vol.24 , pp. 215-238
    • Wiechert, W.1
  • 102
    • 34548811453 scopus 로고    scopus 로고
    • The thermodynamic meaning of metabolic exchange fluxes
    • DOI 10.1529/biophysj.106.099895
    • W Wiechert 2007 The thermodynamic meaning of metabolic exchange fluxes Biophys J 93 6 2255 2264 10.1529/biophysj.106.099895 1:CAS:528: DC%2BD2sXhtVSqur3O (Pubitemid 47437608)
    • (2007) Biophysical Journal , vol.93 , Issue.6 , pp. 2255-2264
    • Wiechert, W.1
  • 104
    • 17144387903 scopus 로고    scopus 로고
    • From stationary to instationary metabolic flux analysis
    • Technology Transfer in Biotechnology: From lab to Industry to Production
    • W Wiechert K Nöh 2005 From stationary to instationary metabolic flux analysis Adv Biochem Eng Biotechnol 92 145 172 1:CAS:528:DC%2BD2MXktlertL8%3D (Pubitemid 44617157)
    • (2005) Advances in Biochemical Engineering/Biotechnology , vol.92 , pp. 145-172
    • Wiechert, W.1    Noh, K.2
  • 105
    • 0035101471 scopus 로고    scopus 로고
    • Metabolic isotopomer labeling systems part I: Global dynamic behavior
    • DOI 10.1016/S0025-5564(00)00059-6, PII S0025556400000596
    • W Wiechert M Wurzel 2001 Metabolic isotopomer labeling systems. Part I: global dynamic behavior Math Biosci 169 2 173 205 1:CAS:528: DC%2BD3MXpsFSjsg%3D%3D (Pubitemid 32164715)
    • (2001) Mathematical Biosciences , vol.169 , Issue.2 , pp. 173-205
    • Wiechert, W.1    Wurzel, M.2
  • 106
    • 0343267841 scopus 로고    scopus 로고
    • Bidirectional reaction steps in metabolic networks: III. Explicit solution and analysis of isotopomer labeling systems
    • DOI 10.1002/(SICI)1097-0290(1999)66:2<69::AID-BIT1>3.0.CO;2-6
    • W Wiechert M Möllney N Isermann M Wurzel AA de Graaf 1999 Bidirectional reaction steps in metabolic networks: III. Explicit solution and analysis of isotopomer labeling systems Biotechnol Bioeng 66 2 69 85 1:CAS:528:DyaK1MXnvFyltrk%3D (Pubitemid 32262268)
    • (1999) Biotechnology and Bioengineering , vol.66 , Issue.2 , pp. 69-85
    • Wiechert, W.1    Mollney, M.2    Isermann, N.3    Wurzel, M.4    De Graaf, A.A.5
  • 108
    • 0037102384 scopus 로고    scopus 로고
    • In vivo analysis of intracellular amino acid labelings by GC/MS
    • DOI 10.1016/S0003-2697(02)00030-1, PII S0003269702000301
    • C Wittmann M Hans E Heinzle 2002 In vivo analysis of intracellular amino acid labelings by GC/MS Anal Biochem 307 2 379 382 1:CAS:528: DC%2BD38XmsV2rsL4%3D (Pubitemid 35026214)
    • (2002) Analytical Biochemistry , vol.307 , Issue.2 , pp. 379-382
    • Wittmann, C.1    Hans, M.2    Heinzle, E.3
  • 109
    • 1642374638 scopus 로고    scopus 로고
    • Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria
    • DOI 10.1016/j.ab.2004.01.002, PII S0003269704000740
    • C Wittmann JO Krömer P Kiefer T Binz E Heinzle 2004 Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria Anal Biochem 327 1 135 139 10.1016/J.Ab.2004.01.002 1:CAS:528: DC%2BD2cXitFKht7g%3D (Pubitemid 38367993)
    • (2004) Analytical Biochemistry , vol.327 , Issue.1 , pp. 135-139
    • Wittmann, C.1    Kromer, J.O.2    Kiefer, P.3    Binz, T.4    Heinzle, E.5
  • 110
    • 42649132891 scopus 로고    scopus 로고
    • 13C metabolic flux analysis using systems parametrized by compactification
    • DOI 10.1186/1752-0509-2-29
    • 13C metabolic flux analysis using systems parametrized by compactification BMC Syst Biol 2 29 10.1186/1752-0509-2-29 (Pubitemid 351597467)
    • (2008) BMC Systems Biology , vol.2 , pp. 29
    • Yang, T.H.1    Frick, O.2    Heinzle, E.3
  • 111
    • 38449111120 scopus 로고    scopus 로고
    • An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
    • DOI 10.1002/bit.21632
    • JD Young JL Walther MR Antoniewicz H Yoo G Stephanopoulos 2008 An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis Biotechnol Bioeng 99 3 686 699 10.1002/bit.21632 1:CAS:528: DC%2BD1cXns1Wisg%3D%3D (Pubitemid 351158266)
    • (2008) Biotechnology and Bioengineering , vol.99 , Issue.3 , pp. 686-699
    • Young, J.D.1    Walther, J.L.2    Antoniewicz, M.R.3    Yoo, H.4    Stephanopoulos, G.5
  • 112
    • 50349092706 scopus 로고    scopus 로고
    • Kinetic flux profiling for quantitation of cellular metabolic fluxes
    • 10.1038/nprot.2008.131 1:CAS:528:DC%2BD1cXhtVSisLnO
    • J Yuan BD Bennett JD Rabinowitz 2008 Kinetic flux profiling for quantitation of cellular metabolic fluxes Nat Protoc 3 8 1328 1340 10.1038/nprot.2008.131 1:CAS:528:DC%2BD1cXhtVSisLnO
    • (2008) Nat Protoc , vol.3 , Issue.8 , pp. 1328-1340
    • Yuan, J.1    Bennett, B.D.2    Rabinowitz, J.D.3
  • 113
    • 77953023574 scopus 로고    scopus 로고
    • 13C metabolic flux analysis for larger scale cultivation using gas chromatography-combustion-isotope ratio mass spectrometry
    • 10.1016/j.ymben.2010.02.001 1:CAS:528:DC%2BC3cXntVegtrg%3D
    • 13C metabolic flux analysis for larger scale cultivation using gas chromatography-combustion-isotope ratio mass spectrometry Metab Eng 12 4 392 400 10.1016/j.ymben.2010.02.001 1:CAS:528:DC%2BC3cXntVegtrg%3D
    • (2010) Metab Eng , vol.12 , Issue.4 , pp. 392-400
    • Yuan, Y.1    Yang, T.H.2    Heinzle, E.3
  • 114
    • 79551508527 scopus 로고    scopus 로고
    • 13C metabolic flux analysis in complex systems
    • 10.1016/j.copbio.2010.08.009 1:CAS:528:DC%2BC3MXhs1egsbo%3D
    • 13C metabolic flux analysis in complex systems Curr Opin Biotechnol 22 1 103 108 10.1016/j.copbio.2010.08.009 1:CAS:528:DC%2BC3MXhs1egsbo%3D
    • (2011) Curr Opin Biotechnol , vol.22 , Issue.1 , pp. 103-108
    • Zamboni, N.1
  • 116
    • 66749182798 scopus 로고    scopus 로고
    • 13C-based metabolic flux analysis
    • 10.1038/nprot.2009.58 1:CAS:528:DC%2BD1MXmsVyqtLw%3D
    • 13C-based metabolic flux analysis Nat Protoc 4 6 878 892 10.1038/nprot.2009.58 1:CAS:528:DC%2BD1MXmsVyqtLw%3D
    • (2009) Nat Protoc , vol.4 , Issue.6 , pp. 878-892
    • Zamboni, N.1    Fendt, S.M.2    Rühl, M.3    Sauer, U.4
  • 117
    • 44849135488 scopus 로고    scopus 로고
    • 13C gluconate tracer method for accurate determination of the pentose phosphate pathway split-ratio in Penicillium chrysogenum
    • DOI 10.1016/j.ymben.2008.04.003, PII S1096717608000177
    • 13C gluconate tracer method for accurate determination of the pentose phosphate pathway split-ratio in Penicillium chrysogenum Metab Eng 10 3-4 178 186 10.1016/j.ymben.2008.04.003 1:CAS:528:DC%2BD1cXnt1ektbk%3D (Pubitemid 351794567)
    • (2008) Metabolic Engineering , vol.10 , Issue.3-4 , pp. 178-186
    • Zhao, Z.1    Kuijvenhoven, K.2    Ras, C.3    Van Gulik, W.M.4    Heijnen, J.J.5    Verheijen, P.J.T.6    Van Winden, W.A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.