메뉴 건너뛰기




Volumn 75, Issue , 2010, Pages 475-492

Functional nuclear organization of transcription and DNA replication: A topographical marriage between chromatin domains and the interchromatin compartment

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2B; RNA POLYMERASE II; SERINE; CELL NUCLEUS DNA;

EID: 80052409661     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2010.75.042     Document Type: Article
Times cited : (115)

References (109)
  • 1
    • 77956272401 scopus 로고    scopus 로고
    • Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo
    • doi: 10.1371/journal.pone.0010531
    • Ahmed K, Dehghani H, Rugg-Gunn P, Fussner E, Rossant J, Bazett-Jones DP. 2010. Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo. PLoS One 5: e10531. doi: 10.1371/journal.pone.0010531.
    • (2010) PLoS One , vol.5
    • Ahmed, K.1    Dehghani, H.2    Rugg-Gunn, P.3    Fussner, E.4    Rossant, J.5    Bazett-Jones, D.P.6
  • 5
    • 0141484562 scopus 로고    scopus 로고
    • Biological networks: The tinkerer as an engineer
    • Alon U. 2003. Biological networks: The tinkerer as an engineer. Science 301: 1866-1867.
    • (2003) Science , vol.301 , pp. 1866-1867
    • Alon, U.1
  • 7
    • 0016861690 scopus 로고
    • Nuclear protein matrix: Association with newly synthesized DNA
    • Berezney R, Coffey DS. 1975. Nuclear protein matrix: Association with newly synthesized DNA. Science 189: 291-293.
    • (1975) Science , vol.189 , pp. 291-293
    • Berezney, R.1    Coffey, D.S.2
  • 9
    • 0034008103 scopus 로고    scopus 로고
    • Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci
    • Berezney R, Dubey DD, Huberman JA. 2000. Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci. Chromosoma 108: 471-484.
    • (2000) Chromosoma , vol.108 , pp. 471-484
    • Berezney, R.1    Dubey, D.D.2    Huberman, J.A.3
  • 12
    • 30044447160 scopus 로고    scopus 로고
    • Cryoelectron microscopy of vitrified sections: A new challenge for the analysis of functional nuclear architecture
    • Bouchet-Marquis C, Dubochet J, Fakan S. 2006. Cryoelectron microscopy of vitrified sections: A new challenge for the analysis of functional nuclear architecture. Histochem Cell Biol 125: 43- 51.
    • (2006) Histochem Cell Biol , vol.125 , pp. 43-51
    • Bouchet-Marquis, C.1    Dubochet, J.2    Fakan, S.3
  • 13
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • doi: 10.1371/journal.pbio.0040138
    • Branco MR, Pombo A. 2006. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 4: e138. doi: 10.1371/journal.pbio.0040138.
    • (2006) PLoS Biol , vol.4
    • Branco, M.R.1    Pombo, A.2
  • 14
    • 70449641057 scopus 로고    scopus 로고
    • Progression through the RNA polymerase II CTD cycle
    • Buratowski S. 2009. Progression through the RNA polymerase II CTD cycle. Mol Cell 36: 541-546.
    • (2009) Mol Cell , vol.36 , pp. 541-546
    • Buratowski, S.1
  • 16
    • 70450222694 scopus 로고    scopus 로고
    • A model for all genomes: The role of transcriptionfactories
    • Cook PR. 2010. A model for all genomes: The role of transcriptionfactories. J Mol Biol 395: 1-10.
    • (2010) J Mol Biol , vol.395 , pp. 1-10
    • Cook, P.R.1
  • 17
    • 0035316574 scopus 로고    scopus 로고
    • Chromosome territories, nuclear architecture and gene regulation in mammalian cells
    • Cremer T, Cremer C. 2001. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2: 292-301.
    • (2001) Nat Rev Genet , vol.2 , pp. 292-301
    • Cremer, T.1    Cremer, C.2
  • 18
    • 77954457349 scopus 로고    scopus 로고
    • Chromosome territories
    • doi: 10.1101/cshperspect. a003889
    • Cremer T, Cremer M. 2010. Chromosome territories. Cold Spring Harb Perspect Biol. 2: a003889. doi: 10.1101/cshperspect. a003889.
    • (2010) Cold Spring Harb Perspect Biol , vol.2
    • Cremer, T.1    Cremer, M.2
  • 19
    • 0001075057 scopus 로고    scopus 로고
    • Principles of spectral precision distance confocal microscopy for the analysis of molecular nuclear structure
    • Academic Press, San Diego (ed. H. Jähne, P Geißler)
    • Cremer C, Edelmann P, Bornfleth H, Kreth G, Muench H, Luz H, Hausmann M. 1999. Principles of spectral precision distance confocal microscopy for the analysis of molecular nuclear structure. In Handbook of computer vision and applications (ed. H. Jähne, P Geißler), pp. 839-857. Academic Press, San Diego.
    • (1999) Handbook of computer vision and applications , pp. 839-857
    • Cremer, C.1    Edelmann, P.2    Bornfleth, H.3    Kreth, G.4    Muench, H.5    Luz, H.6    Hausmann, M.7
  • 20
    • 0033758019 scopus 로고    scopus 로고
    • Chromosome territories, interchromatin domain compartment, and nuclear matrix: An integrated view of the functional nuclear architecture
    • Cremer T, Kreth G, Koester H, Fink RH, Heintzmann R, Cremer M, Solovei I, Zink D, Cremer C. 2000. Chromosome territories, interchromatin domain compartment, and nuclear matrix: An integrated view of the functional nuclear architecture. Crit Rev Eukar Gene 10: 179-212.
    • (2000) Crit Rev Eukar Gene , vol.10 , pp. 179-212
    • Cremer, T.1    Kreth, G.2    Koester, H.3    Fink, R.H.4    Heintzmann, R.5    Cremer, M.6    Solovei, I.7    Zink, D.8    Cremer, C.9
  • 23
    • 0003544037 scopus 로고
    • Scaling concepts in polymer physics
    • Cornell University Press, Ithaca, NY
    • de Gennes PG. 1979. Scaling concepts in polymer physics. Cornell University Press, Ithaca, NY.
    • (1979)
    • de Gennes, P.G.1
  • 25
    • 35548953639 scopus 로고    scopus 로고
    • Inter-chromosomal gene regulation in the mammalian cell nucleus
    • de Laat W, Grosveld F. 2007. Inter-chromosomal gene regulation in the mammalian cell nucleus. Curr Opin Genet Dev 17: 456- 464.
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 456-464
    • de Laat, W.1    Grosveld, F.2
  • 26
    • 44149124228 scopus 로고    scopus 로고
    • Cracking the RNA polymerase II CTD code
    • Egloff S, Murphy S. 2008. Cracking the RNA polymerase II CTD code. Trends Genet 24: 280-288.
    • (2008) Trends Genet , vol.24 , pp. 280-288
    • Egloff, S.1    Murphy, S.2
  • 27
    • 58149401194 scopus 로고    scopus 로고
    • Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
    • Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, Dubochet J. 2008. Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc Natl Acad Sci 105: 19732-19737.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 19732-19737
    • Eltsov, M.1    Maclellan, K.M.2    Maeshima, K.3    Frangakis, A.S.4    Dubochet, J.5
  • 28
    • 47649111278 scopus 로고    scopus 로고
    • RNA polymerase II activity is located on the surface of protein-rich transcription factories
    • Eskiw CH, Rapp A, Carter DR, Cook PR. 2008. RNA polymerase II activity is located on the surface of protein-rich transcription factories. J Cell Sci 121: 1999-2007.
    • (2008) J Cell Sci , vol.121 , pp. 1999-2007
    • Eskiw, C.H.1    Rapp, A.2    Carter, D.R.3    Cook, P.R.4
  • 29
    • 1942488260 scopus 로고    scopus 로고
    • Ultrastructural cytochemical analyses of nuclear functional architecture
    • Fakan S. 2004. Ultrastructural cytochemical analyses of nuclear functional architecture. Eur J Histochem 48: 5-14.
    • (2004) Eur J Histochem , vol.48 , pp. 5-14
    • Fakan, S.1
  • 30
    • 0015984360 scopus 로고
    • Localization of newly-synthesized DNA in a mammalian cell as visualized by high resolution autoradiography
    • Fakan S, Hancock R. 1974. Localization of newly-synthesized DNA in a mammalian cell as visualized by high resolution autoradiography. Exp Cell Res 83: 95-102.
    • (1974) Exp Cell Res , vol.83 , pp. 95-102
    • Fakan, S.1    Hancock, R.2
  • 31
    • 35649020707 scopus 로고    scopus 로고
    • The perichromatin region: A functional compartment in the nucleus that determines large-scale chromatin folding
    • Fakan S, van Driel R. 2007. The perichromatin region: A functional compartment in the nucleus that determines large-scale chromatin folding. Semin Cell Dev Biol 18: 676-681.
    • (2007) Semin Cell Dev Biol , vol.18 , pp. 676-681
    • Fakan, S.1    van Driel, R.2
  • 32
    • 33745632115 scopus 로고    scopus 로고
    • A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value
    • Faro-Trindade I, Cook PR. 2006. A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value. Mol Biol Cell 17: 2910-2920.
    • (2006) Mol Biol Cell , vol.17 , pp. 2910-2920
    • Faro-Trindade, I.1    Cook, P.R.2
  • 33
    • 74949142827 scopus 로고    scopus 로고
    • The effects of osmotic stress on the structure and function of the cell nucleus
    • Finan JD, Guilak F. 2010. The effects of osmotic stress on the structure and function of the cell nucleus. J Cell Biochem 109: 460- 467.
    • (2010) J Cell Biochem , vol.109 , pp. 460-467
    • Finan, J.D.1    Guilak, F.2
  • 34
    • 17744411075 scopus 로고    scopus 로고
    • Diffusion-limited compartmentalization of mammalian cell nuclei assessed by microinjected macromolecules
    • Gorisch SM, Richter K, Scheuermann MO, Herrmann H, Lichter P. 2003. Diffusion-limited compartmentalization of mammalian cell nuclei assessed by microinjected macromolecules. Exp Cell Res 289: 282-294.
    • (2003) Exp Cell Res , vol.289 , pp. 282-294
    • Gorisch, S.M.1    Richter, K.2    Scheuermann, M.O.3    Herrmann, H.4    Lichter, P.5
  • 35
    • 18744411828 scopus 로고    scopus 로고
    • Mobility of multi-subunit complexes in the nucleus: Accessibility and dynamics of chromatin subcompartments
    • Gorisch SM, Lichter P, Rippe K. 2005. Mobility of multi-subunit complexes in the nucleus: Accessibility and dynamics of chromatin subcompartments. Histochem Cell Biol 123: 217-228.
    • (2005) Histochem Cell Biol , vol.123 , pp. 217-228
    • Gorisch, S.M.1    Lichter, P.2    Rippe, K.3
  • 36
    • 77957370148 scopus 로고    scopus 로고
    • In vivo imaging of labelled endogenous β actin mRNA during nucleocytoplasmic transport
    • Grünwald D, Singer RH. 2010. In vivo imaging of labelled endogenous β actin mRNA during nucleocytoplasmic transport. Nature 467: 604-607.
    • (2010) Nature , vol.467 , pp. 604-607
    • Grünwald, D.1    Singer, R.H.2
  • 38
    • 0034028826 scopus 로고    scopus 로고
    • Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy
    • Gustafsson MG. 2000. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J Microsc 198: 82-87.
    • (2000) J Microsc , vol.198 , pp. 82-87
    • Gustafsson, M.G.1
  • 40
    • 33750268390 scopus 로고    scopus 로고
    • Spatial organization of transcription by RNA polymerase III
    • Haeusler RA, Engelke DR. 2006. Spatial organization of transcription by RNA polymerase III. Nucleic Acids Res 34: 4826-4836.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4826-4836
    • Haeusler, R.A.1    Engelke, D.R.2
  • 41
    • 0032639282 scopus 로고    scopus 로고
    • Laterally modulated excitation microscopy: Improvement of resolution by using a diffraction grating
    • Heintzmann R, Cremer C. 1999. Laterally modulated excitation microscopy: Improvement of resolution by using a diffraction grating. Proc SPIE 3568: 185-196.
    • (1999) Proc SPIE , vol.3568 , pp. 185-196
    • Heintzmann, R.1    Cremer, C.2
  • 42
    • 58149236663 scopus 로고    scopus 로고
    • Microscopy and its focal switch
    • Hell SW. 2009. Microscopy and its focal switch. Nat Methods 6: 24-32.
    • (2009) Nat Methods , vol.6 , pp. 24-32
    • Hell, S.W.1
  • 43
    • 0028038215 scopus 로고
    • Replication factories and nuclear bodies: The ultrastructural characterization of replication sites during the cell cycle
    • Hozák P, Jackson DA, Cook PR. 1994. Replication factories and nuclear bodies: The ultrastructural characterization of replication sites during the cell cycle. J Cell Sci 107: 2191-2202.
    • (1994) J Cell Sci , vol.107 , pp. 2191-2202
    • Hozák, P.1    Jackson, D.A.2    Cook, P.R.3
  • 44
    • 67650762824 scopus 로고    scopus 로고
    • Super-resolution fluorescence microscopy
    • Huang B, Bates M, Zhuang X. 2009. Super-resolution fluorescence microscopy. Annu Rev Biochem 78: 993-1016.
    • (2009) Annu Rev Biochem , vol.78 , pp. 993-1016
    • Huang, B.1    Bates, M.2    Zhuang, X.3
  • 45
    • 0022445879 scopus 로고
    • The nuclear skeleton and the spatial arrangement of chromosomes in the interphase nucleus of vertebrate somatic cells
    • Hubert J, Bourgeois CA. 1986. The nuclear skeleton and the spatial arrangement of chromosomes in the interphase nucleus of vertebrate somatic cells. Hum Genet 74: 1-15.
    • (1986) Hum Genet , vol.74 , pp. 1-15
    • Hubert, J.1    Bourgeois, C.A.2
  • 47
    • 0032559794 scopus 로고    scopus 로고
    • Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells
    • Jackson DA, Pombo A. 1998. Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells. J Cell Biol. 140: 1285-1295.
    • (1998) J Cell Biol , vol.140 , pp. 1285-1295
    • Jackson, D.A.1    Pombo, A.2
  • 48
    • 0031813779 scopus 로고    scopus 로고
    • Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei
    • Jackson DA, Iborra FJ, Manders EM, Cook PR. 1998. Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei. Mol Biol Cell 9: 1523-1536.
    • (1998) Mol Biol Cell , vol.9 , pp. 1523-1536
    • Jackson, D.A.1    Iborra, F.J.2    Manders, E.M.3    Cook, P.R.4
  • 49
    • 0017771466 scopus 로고
    • Evolution and tinkering
    • Jacob F. 1977. Evolution and tinkering. Science 196: 1161-1166.
    • (1977) Science , vol.196 , pp. 1161-1166
    • Jacob, F.1
  • 50
    • 0004282602 scopus 로고    scopus 로고
    • Digitale Bildverarbeitung
    • 6th ed Springer, Heidelberg, Germany
    • Jähne B. 2005. Digitale Bildverarbeitung, 6th ed. Springer, Heidelberg, Germany.
    • (2005)
    • Jähne, B.1
  • 51
    • 0036192575 scopus 로고    scopus 로고
    • DNA replication and nuclear architecture
    • Jaunin F, Fakan S. 2002. DNA replication and nuclear architecture. J Cell Biochem 85: 1-9.
    • (2002) J Cell Biochem , vol.85 , pp. 1-9
    • Jaunin, F.1    Fakan, S.2
  • 52
    • 0034329469 scopus 로고    scopus 로고
    • Fine structural in situ analysis of nascent DNA movement following DNA replication
    • Jaunin F, Visser AE, Cmarko D, Aten JA, Fakan S. 2000. Fine structural in situ analysis of nascent DNA movement following DNA replication. Exp Cell Res 260: 313-323.
    • (2000) Exp Cell Res , vol.260 , pp. 313-323
    • Jaunin, F.1    Visser, A.E.2    Cmarko, D.3    Aten, J.A.4    Fakan, S.5
  • 53
    • 33646510364 scopus 로고    scopus 로고
    • Genome-wide analysis of protein-DNA interactions
    • Kim TH, Ren B. 2006. Genome-wide analysis of protein-DNA interactions. Annu Rev Genomics Hum Genet 7: 81-102.
    • (2006) Annu Rev Genomics Hum Genet , vol.7 , pp. 81-102
    • Kim, T.H.1    Ren, B.2
  • 54
    • 0037049641 scopus 로고    scopus 로고
    • The transcription cycle of RNA polymerase II in living cells
    • Kimura H, Sugaya K, Cook PR. 2002. The transcription cycle of RNA polymerase II in living cells. J Cell Biol 159: 777-782.
    • (2002) J Cell Biol , vol.159 , pp. 777-782
    • Kimura, H.1    Sugaya, K.2    Cook, P.R.3
  • 55
    • 77954818442 scopus 로고    scopus 로고
    • Genome-nuclear lamina interactions and gene regulation
    • Kind J, van Steensel B. 2010. Genome-nuclear lamina interactions and gene regulation. Curr Opin Cell Biol 22: 320-325.
    • (2010) Curr Opin Cell Biol , vol.22 , pp. 320-325
    • Kind, J.1    van Steensel, B.2
  • 57
    • 67349252324 scopus 로고    scopus 로고
    • Changes of higher order chromatin arrangements during major genome activation in bovine preimplantation embryos
    • Koehler K, Zakhartchenko V, Froenicke L, Stone G, Stanyon R, Wolf E, Cremer T, Brero A. 2009. Changes of higher order chromatin arrangements during major genome activation in bovine preimplantation embryos. Exp Cell Res 315: 2053-2063.
    • (2009) Exp Cell Res , vol.315 , pp. 2053-2063
    • Koehler, K.1    Zakhartchenko, V.2    Froenicke, L.3    Stone, G.4    Stanyon, R.5    Wolf, E.6    Cremer, T.7    Brero, A.8
  • 59
    • 2642570048 scopus 로고    scopus 로고
    • Virtual radiation biophysics: Implications of nuclear structure
    • Kreth G, Finsterle J, Cremer C. 2004a. Virtual radiation biophysics: Implications of nuclear structure. Cytogenet Genome Res 104: 157-161.
    • (2004) Cytogenet Genome Res , vol.104 , pp. 157-161
    • Kreth, G.1    Finsterle, J.2    Cremer, C.3
  • 60
    • 2142772663 scopus 로고    scopus 로고
    • Radial arrangement of chromosome territories in human cell nuclei: A computer model approach based on gene density indicates a probabilistic global positioning code
    • Kreth G, Finsterle J, von Hase J, Cremer M, Cremer C. 2004b. Radial arrangement of chromosome territories in human cell nuclei: A computer model approach based on gene density indicates a probabilistic global positioning code. Biophys J 86: 2803-2812.
    • (2004) Biophys J , vol.86 , pp. 2803-2812
    • Kreth, G.1    Finsterle, J.2    von Hase, J.3    Cremer, M.4    Cremer, C.5
  • 61
    • 34249945361 scopus 로고    scopus 로고
    • Cell type-specific quantitative predictions of radiation-induced chromosome aberrations: A computer model approach
    • Kreth G, Pazhanisamy SK, Hausmann M, Cremer C. 2007. Cell type-specific quantitative predictions of radiation-induced chromosome aberrations: A computer model approach. Radiat Res 167: 515-525.
    • (2007) Radiat Res , vol.167 , pp. 515-525
    • Kreth, G.1    Pazhanisamy, S.K.2    Hausmann, M.3    Cremer, C.4
  • 63
    • 33645887244 scopus 로고    scopus 로고
    • Chromatin looping and the probability of transcription
    • Li Q, Barkess G, Qian H. 2006. Chromatin looping and the probability of transcription. Trends Genet 22: 197-202.
    • (2006) Trends Genet , vol.22 , pp. 197-202
    • Li, Q.1    Barkess, G.2    Qian, H.3
  • 65
    • 59049098879 scopus 로고    scopus 로고
    • Differential nuclear scaffold/matrix attachment marks expressed genes
    • Linnemann AK, Platts AE, Krawetz SA. 2009. Differential nuclear scaffold/matrix attachment marks expressed genes. Hum Mol Genet 18: 645-654.
    • (2009) Hum Mol Genet , vol.18 , pp. 645-654
    • Linnemann, A.K.1    Platts, A.E.2    Krawetz, S.A.3
  • 66
    • 0018148612 scopus 로고
    • Helper-independent transformation by unintegrated Harvey sarcoma virus DNA
    • Lowy DR, Rands E, Scolnick EM. 1978. Helper-independent transformation by unintegrated Harvey sarcoma virus DNA. J Virol 26: 291-298.
    • (1978) J Virol , vol.26 , pp. 291-298
    • Lowy, D.R.1    Rands, E.2    Scolnick, E.M.3
  • 68
    • 39049163853 scopus 로고    scopus 로고
    • Packaging the genome: The structure of mitotic chromosomes
    • Maeshima K, Eltsov M. 2008. Packaging the genome: The structure of mitotic chromosomes. J Biochem 143: 145-153.
    • (2008) J Biochem , vol.143 , pp. 145-153
    • Maeshima, K.1    Eltsov, M.2
  • 69
    • 77954819238 scopus 로고    scopus 로고
    • Chromatin structure: Does the 30-nm fibre exist in vivo?
    • Maeshima K, Hihara S, Eltsov M. 2010. Chromatin structure: Does the 30-nm fibre exist in vivo? Curr Opin Cell Biol 22: 291-297.
    • (2010) Curr Opin Cell Biol , vol.22 , pp. 291-297
    • Maeshima, K.1    Hihara, S.2    Eltsov, M.3
  • 70
    • 56149099862 scopus 로고    scopus 로고
    • Spatio-temporal dynamics of replication and transcription sites in the mammalian cell nucleus
    • Malyavantham KS, Bhattacharya S, Alonso WD, Acharya R, Berezney R. 2008a. Spatio-temporal dynamics of replication and transcription sites in the mammalian cell nucleus. Chromosoma 117: 553-567.
    • (2008) Chromosoma , vol.117 , pp. 553-567
    • Malyavantham, K.S.1    Bhattacharya, S.2    Alonso, W.D.3    Acharya, R.4    Berezney, R.5
  • 71
    • 54849442463 scopus 로고    scopus 로고
    • Identifying functional neighborhoods within the cell nucleus: Proximity analysis of early S-phase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1γ, matrin 3 and SAF-A
    • Malyavantham KS, Bhattacharya S, Barbeitos M, Mukherjee L, Xu J, Fackelmayer FO, Berezney R. 2008b. Identifying functional neighborhoods within the cell nucleus: Proximity analysis of early S-phase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1γ, matrin 3 and SAF-A. J Cell Biochem 105: 391-403.
    • (2008) J Cell Biochem , vol.105 , pp. 391-403
    • Malyavantham, K.S.1    Bhattacharya, S.2    Barbeitos, M.3    Mukherjee, L.4    Xu, J.5    Fackelmayer, F.O.6    Berezney, R.7
  • 72
    • 2342639627 scopus 로고    scopus 로고
    • Measuring the size of biological nanostructures with spatially modulated illumination microscopy
    • Martin S, Failla AV, Spori U, Cremer C, Pombo A. 2004. Measuring the size of biological nanostructures with spatially modulated illumination microscopy. Mol Biol Cell 15: 2449-2455.
    • (2004) Mol Biol Cell , vol.15 , pp. 2449-2455
    • Martin, S.1    Failla, A.V.2    Spori, U.3    Cremer, C.4    Pombo, A.5
  • 73
    • 77349090693 scopus 로고    scopus 로고
    • Rapid chromosome territory relocation by nuclear motor activity in response to serum removal in primary human fibroblasts
    • doi: 10.1186/gb-2010-11-1-r5
    • Mehta IS, Amira M, Harvey AJ, Bridger JM. 2010. Rapid chromosome territory relocation by nuclear motor activity in response to serum removal in primary human fibroblasts. Genome Biol 11: R5. doi: 10.1186/gb-2010-11-1-r5.
    • (2010) Genome Biol , vol.11
    • Mehta, I.S.1    Amira, M.2    Harvey, A.J.3    Bridger, J.M.4
  • 74
    • 0014510121 scopus 로고
    • Fine structural organization of the interphase nucleus in some mammalian cells
    • Monneron A, Bernhard W. 1969. Fine structural organization of the interphase nucleus in some mammalian cells. J. Ultrastruct Res 27: 266-288.
    • (1969) J. Ultrastruct Res , vol.27 , pp. 266-288
    • Monneron, A.1    Bernhard, W.2
  • 77
    • 0030956629 scopus 로고    scopus 로고
    • The nuclear matrix revealed by eluting chromatin from a crosslinked nucleus
    • Nickerson JA, Krockmalnic G, Wan KM, Penman S. 1997. The nuclear matrix revealed by eluting chromatin from a crosslinked nucleus. Proc Natl Acad Sci 94: 4446-4450.
    • (1997) Proc Natl Acad Sci , vol.94 , pp. 4446-4450
    • Nickerson, J.A.1    Krockmalnic, G.2    Wan, K.M.3    Penman, S.4
  • 80
    • 45749154811 scopus 로고    scopus 로고
    • Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription
    • doi: 10.1371/journal.pone.0001661
    • Palstra RJ, Simonis M, Klous P, Brasset E, Eijkelkamp B, de Laat W. 2008.Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription. PLoS One 3: e1661. doi: 10.1371/journal.pone.0001661.
    • (2008) PLoS One , vol.3
    • Palstra, R.J.1    Simonis, M.2    Klous, P.3    Brasset, E.4    Eijkelkamp, B.5    de Laat, W.6
  • 83
    • 26244452986 scopus 로고    scopus 로고
    • Exploiting nuclear duality of ciliates to analyse topological requirements for DNA replication and transcription
    • Postberg J, Alexandrova O, Cremer T, Lipps HJ. 2005. Exploiting nuclear duality of ciliates to analyse topological requirements for DNA replication and transcription. J Cell Sci 118: 3973-3983.
    • (2005) J Cell Sci , vol.118 , pp. 3973-3983
    • Postberg, J.1    Alexandrova, O.2    Cremer, T.3    Lipps, H.J.4
  • 84
    • 59949100423 scopus 로고    scopus 로고
    • Spatial and temporal plasticity of chromatin during programmed DNA reorganization in Stylonychia macronuclear development
    • doi: 10.1186/1756-8935-1-3
    • Postberg J, Heyse K, Cremer M, Cremer T, Lipps HJ. 2008. Spatial and temporal plasticity of chromatin during programmed DNA reorganization in Stylonychia macronuclear development. Epigenetics Chromatin 1: 3. doi: 10.1186/1756-8935-1-3.
    • (2008) Epigenetics Chromatin , vol.1 , pp. 3
    • Postberg, J.1    Heyse, K.2    Cremer, M.3    Cremer, T.4    Lipps, H.J.5
  • 85
    • 84879171166 scopus 로고    scopus 로고
    • Evolutionary origin of the cell nucleus and its functional architecture
    • Postberg J, Lipps HJ, Cremer T. 2010. Evolutionary origin of the cell nucleus and its functional architecture. Essays Biochem 48: 1-24.
    • (2010) Essays Biochem , vol.48 , pp. 1-24
    • Postberg, J.1    Lipps, H.J.2    Cremer, T.3
  • 86
    • 43149096709 scopus 로고    scopus 로고
    • High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy
    • Reymann J, Baddeley D, Gunkel M, Lemmer P, Stadter W, Jegou T, Rippe K, Cremer C, Birk U. 2008. High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy. Chromosome Res 16: 367-382.
    • (2008) Chromosome Res , vol.16 , pp. 367-382
    • Reymann, J.1    Baddeley, D.2    Gunkel, M.3    Lemmer, P.4    Stadter, W.5    Jegou, T.6    Rippe, K.7    Cremer, C.8    Birk, U.9
  • 87
    • 70349847560 scopus 로고    scopus 로고
    • Revealing the high-resolution three-dimensional network of chromatin and interchromatin space: A novel electron-microscopic approach to reconstructing nuclear architecture
    • Rouquette J, Genoud C, Vazquez-Nin GH, Kraus B, Cremer T, Fakan S. 2009. Revealing the high-resolution three-dimensional network of chromatin and interchromatin space: A novel electron-microscopic approach to reconstructing nuclear architecture. Chromosome Res 17: 801-810.
    • (2009) Chromosome Res , vol.17 , pp. 801-810
    • Rouquette, J.1    Genoud, C.2    Vazquez-Nin, G.H.3    Kraus, B.4    Cremer, T.5    Fakan, S.6
  • 88
    • 77954457057 scopus 로고    scopus 로고
    • Functional nuclear architecture studied by microscopy: Present and future
    • Rouquette J, Cremer C, Cremer T, Fakan S. 2010. Functional nuclear architecture studied by microscopy: Present and future. Int Rev Cell Mol Biol 282: 1-90.
    • (2010) Int Rev Cell Mol Biol , vol.282 , pp. 1-90
    • Rouquette, J.1    Cremer, C.2    Cremer, T.3    Fakan, S.4
  • 89
    • 33749026335 scopus 로고    scopus 로고
    • Sub- diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust MJ, Bates M, Zhuang X. 2006. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3: 793-795.
    • (2006) Nat Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 90
    • 0035141289 scopus 로고    scopus 로고
    • Two- color fluorescence labeling of early and mid-to-late replicating chromatin in living cells
    • Schermelleh L, Solovei I, Zink D, Cremer T. 2001. Two-color fluorescence labeling of early and mid-to-late replicating chromatin in living cells. Chromosome Res 9: 77-80.
    • (2001) Chromosome Res , vol.9 , pp. 77-80
    • Schermelleh, L.1    Solovei, I.2    Zink, D.3    Cremer, T.4
  • 92
    • 77954995399 scopus 로고    scopus 로고
    • A guide to superresolution fluorescence microscopy
    • Schermelleh L, Heintzmann R, Leonhardt H. 2010. A guide to superresolution fluorescence microscopy. J Cell Biol 190: 165-175.
    • (2010) J Cell Biol , vol.190 , pp. 165-175
    • Schermelleh, L.1    Heintzmann, R.2    Leonhardt, H.3
  • 94
    • 77956383373 scopus 로고    scopus 로고
    • Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions
    • Sinclair P, Bian Q, Plutz M, Heard E, Belmont AS. 2010. Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions. J Cell Biol 190: 761-776.
    • (2010) J Cell Biol , vol.190 , pp. 761-776
    • Sinclair, P.1    Bian, Q.2    Plutz, M.3    Heard, E.4    Belmont, A.S.5
  • 95
    • 62149151774 scopus 로고    scopus 로고
    • Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus
    • Solimando L, Luijsterburg MS, Vecchio L, Vermeulen W, van Driel R, Fakan S. 2009. Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus. J Cell Sci 122: 83-91.
    • (2009) J Cell Sci , vol.122 , pp. 83-91
    • Solimando, L.1    Luijsterburg, M.S.2    Vecchio, L.3    Vermeulen, W.4    van Driel, R.5    Fakan, S.6
  • 96
  • 97
    • 0028090269 scopus 로고
    • Replicon clusters may form structurally stable complexes of chromatin and chromosomes
    • Sparvoli E, Levi M, Rossi E. 1994. Replicon clusters may form structurally stable complexes of chromatin and chromosomes. J Cell Sci 107: 3097-3103.
    • (1994) J Cell Sci , vol.107 , pp. 3097-3103
    • Sparvoli, E.1    Levi, M.2    Rossi, E.3
  • 98
    • 70350455487 scopus 로고    scopus 로고
    • Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes
    • Steiner LA, Maksimova Y, Schulz V, Wong C, Raha D, Mahajan C, Weissman M, Gallagher G. 2009. Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes. Mol Cell Biol 29: 5399-5412.
    • (2009) Mol Cell Biol , vol.29 , pp. 5399-5412
    • Steiner, L.A.1    Maksimova, Y.2    Schulz, V.3    Wong, C.4    Raha, D.5    Mahajan, C.6    Weissman, M.7    Gallagher, G.8
  • 102
    • 0343081680 scopus 로고    scopus 로고
    • Assembly and functional organization of the nucleolus: Ultrastructural analysis of Saccharomyces cerevisiae mutants
    • Trumtel S, Léger-Silvestre I, Gleizes PE, Teulières F, Gas N. 2000. Assembly and functional organization of the nucleolus: Ultrastructural analysis of Saccharomyces cerevisiae mutants. Mol Biol Cell 11: 2175-2189.
    • (2000) Mol Biol Cell , vol.11 , pp. 2175-2189
    • Trumtel, S.1    Léger-Silvestre, I.2    Gleizes, P.E.3    Teulières, F.4    Gas, N.5
  • 103
    • 0034007256 scopus 로고    scopus 로고
    • Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase
    • Van Steensel B, Henikoff S. 2000. Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase. Nat Biotechnol 18: 424-428
    • (2000) Nat Biotechnol , vol.18 , pp. 424-428
    • Van Steensel, B.1    Henikoff, S.2
  • 104
    • 0027345656 scopus 로고
    • Cryofixation and cryosubstitution: A useful alternative in the analyses of cellular fine structure
    • von Schack ML, Fakan S, Villiger W, Müller M. 1993. Cryofixation and cryosubstitution: A useful alternative in the analyses of cellular fine structure. Eur J Histochem 37: 5-18.
    • (1993) Eur J Histochem , vol.37 , pp. 5-18
    • von Schack, M.L.1    Fakan, S.2    Villiger, W.3    Müller, M.4
  • 105
    • 71949107301 scopus 로고    scopus 로고
    • Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II
    • Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, et al. 2009. Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Mol Cell Biol 29: 6074-6085.
    • (2009) Mol Cell Biol , vol.29 , pp. 6074-6085
    • Wang, P.1    Lin, C.2    Smith, E.R.3    Guo, H.4    Sanderson, B.W.5    Wu, M.6    Gogol, M.7    Alexander, T.8    Seidel, C.9    Wiedemann, L.M.10
  • 108
    • 0033602020 scopus 로고    scopus 로고
    • Organization of early and late replicating DNA in human chromosome territories
    • Zink D, Bornfleth H, Visser A, Cremer C, Cremer T. 1999. Organization of early and late replicating DNA in human chromosome territories. Exp Cell Res 247: 176-188.
    • (1999) Exp Cell Res , vol.247 , pp. 176-188
    • Zink, D.1    Bornfleth, H.2    Visser, A.3    Cremer, C.4    Cremer, T.5
  • 109
    • 30044435641 scopus 로고    scopus 로고
    • Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones
    • Zinner R, Albiez H, Walter J, Peters AH, Cremer T, Cremer M. 2006. Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones. Histochem Cell Biol 125: 3-19.
    • (2006) Histochem Cell Biol , vol.125 , pp. 3-19
    • Zinner, R.1    Albiez, H.2    Walter, J.3    Peters, A.H.4    Cremer, T.5    Cremer, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.