-
1
-
-
33751258576
-
Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks
-
Albiez H, Cremer M, Tiberi C, Vecchio L, Schermelleh L, Dittrich S, Kupper K, Joffe B, Thormeyer T, von Hase J, Yang S, Rohr K, Leonhardt H, Solovei I, Cremer C, Fakan S, Cremer T (2006) Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks. Chromosome Res 14:707-733
-
(2006)
Chromosome Res
, vol.14
, pp. 707-733
-
-
Albiez, H.1
Cremer, M.2
Tiberi, C.3
Vecchio, L.4
Schermelleh, L.5
Dittrich, S.6
Kupper, K.7
Joffe, B.8
Thormeyer, T.9
von Hase, J.10
Yang, S.11
Rohr, K.12
Leonhardt, H.13
Solovei, I.14
Cremer, C.15
Fakan, S.16
Cremer, T.17
-
3
-
-
0036374278
-
Regulating the mammalian genome: The role of nuclear architecture
-
Berezney R (2002) Regulating the mammalian genome: The role of nuclear architecture. Adv Enzyme Regul 42:39-52
-
(2002)
Adv Enzyme Regul
, vol.42
, pp. 39-52
-
-
Berezney, R.1
-
4
-
-
0032414848
-
The new paradigm: Integrating genomic function and nuclear architecture
-
Berezney R, Wei X (1998) The new paradigm: Integrating genomic function and nuclear architecture. J Cell Biochem 30-31:238-242
-
(1998)
J Cell Biochem
, vol.30-31
, pp. 238-242
-
-
Berezney, R.1
Wei, X.2
-
5
-
-
0029620266
-
The nuclear matrix: A structural milieu for genomic function
-
Berezney R, Mortillaro MJ, Ma H, Wei X, Samarabandu J (1995) The nuclear matrix: A structural milieu for genomic function. Int Rev Cyt 162A:1-65
-
(1995)
Int Rev Cyt
, vol.162 A
, pp. 1-65
-
-
Berezney, R.1
Mortillaro, M.J.2
Ma, H.3
Wei, X.4
Samarabandu, J.5
-
6
-
-
0034008103
-
Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci
-
Berezney R, Dubey DD, Huberman JA (2000) Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci. Chromosoma 108:471-484
-
(2000)
Chromosoma
, vol.108
, pp. 471-484
-
-
Berezney, R.1
Dubey, D.D.2
Huberman, J.A.3
-
7
-
-
28444450802
-
Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus
-
Berezney R, Malyavantham KS, Pliss A, Bhattacharya S, Acharya R (2005) Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus. Adv Enzyme Regul 45:17-26
-
(2005)
Adv Enzyme Regul
, vol.45
, pp. 17-26
-
-
Berezney, R.1
Malyavantham, K.S.2
Pliss, A.3
Bhattacharya, S.4
Acharya, R.5
-
8
-
-
33846895987
-
Automated matching of genomic structures in microscopic images of living cells using an information theoretic approach
-
Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R (2005) Automated matching of genomic structures in microscopic images of living cells using an information theoretic approach. Conf Proc IEEE Eng Med Biol Soc 6:6425-6428
-
(2005)
Conf Proc IEEE Eng Med Biol Soc
, vol.6
, pp. 6425-6428
-
-
Bhattacharya, S.1
Acharya, R.2
Pliss, A.3
Malyavantham, K.S.4
Berezney, R.5
-
9
-
-
23044482693
-
Do higher-order chromatin structure and nuclear reorganization play a role in regulating Hox gene expression during development?
-
Bickmore WA, Mahy NL, Chambeyron S (2004) Do higher-order chromatin structure and nuclear reorganization play a role in regulating Hox gene expression during development? Cold Spring Harbor Symp Quant Biol 69:251-257
-
(2004)
Cold Spring Harbor Symp Quant Biol
, vol.69
, pp. 251-257
-
-
Bickmore, W.A.1
Mahy, N.L.2
Chambeyron, S.3
-
10
-
-
0034707690
-
Promyelocytic leukemia (PML) nuclear bodies are protein structures that do not accumulate RNA
-
Boisvert FM, Hendzel MJ, Bazett-Jones DP (2000) Promyelocytic leukemia (PML) nuclear bodies are protein structures that do not accumulate RNA. J Cell Biol 148:283-292
-
(2000)
J Cell Biol
, vol.148
, pp. 283-292
-
-
Boisvert, F.M.1
Hendzel, M.J.2
Bazett-Jones, D.P.3
-
11
-
-
33845764296
-
A guided tour into subcellular colocalization analysis in light microscopy
-
Bolte S, Cordelieres FP (2006) A guided tour into subcellular colocalization analysis in light microscopy. J Microsc 224:213-232
-
(2006)
J Microsc
, vol.224
, pp. 213-232
-
-
Bolte, S.1
Cordelieres, F.P.2
-
12
-
-
0028900584
-
Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains
-
Bregman DB, Du L, van der Zee S, Warren SL (1995) Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains. J Cell Biol 129:287-298
-
(1995)
J Cell Biol
, vol.129
, pp. 287-298
-
-
Bregman, D.B.1
Du, L.2
van der Zee, S.3
Warren, S.L.4
-
13
-
-
23944446057
-
Replication and transcription: Shaping the landscape of the genome
-
Chakalova L, Debrand E, Mitchell JA, Osborne CS, Fraser P (2005) Replication and transcription: Shaping the landscape of the genome. Nat Rev 6:669-677
-
(2005)
Nat Rev
, vol.6
, pp. 669-677
-
-
Chakalova, L.1
Debrand, E.2
Mitchell, J.A.3
Osborne, C.S.4
Fraser, P.5
-
14
-
-
2442695407
-
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
-
Chambeyron S, Bickmore WA (2004a) Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription. Genes Dev 18:1119-1130
-
(2004)
Genes Dev
, vol.18
, pp. 1119-1130
-
-
Chambeyron, S.1
Bickmore, W.A.2
-
15
-
-
2342485824
-
Does looping and clustering in the nucleus regulate gene expression?
-
Chambeyron S, Bickmore WA (2004b) Does looping and clustering in the nucleus regulate gene expression? Curr Opin Cell Biol 16:256-262
-
(2004)
Curr Opin Cell Biol
, vol.16
, pp. 256-262
-
-
Chambeyron, S.1
Bickmore, W.A.2
-
17
-
-
0032917782
-
Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection
-
Cmarko D, Verschure PJ, Martin TE, Dahmus ME, Krause S, Fu XD, van Driel R, Fakan S (1999) Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection. Mol Biol Cell 10:211-223
-
(1999)
Mol Biol Cell
, vol.10
, pp. 211-223
-
-
Cmarko, D.1
Verschure, P.J.2
Martin, T.E.3
Dahmus, M.E.4
Krause, S.5
Fu, X.D.6
van Driel, R.7
Fakan, S.8
-
18
-
-
0032483536
-
Duplicating a tangled genome
-
Cook P (1998) Duplicating a tangled genome. Science 281:1466-1467
-
(1998)
Science
, vol.281
, pp. 1466-1467
-
-
Cook, P.1
-
19
-
-
11144321432
-
Organization of chromatin in the interphase mammalian cell
-
Dehghani H, Dellaire G, Bazett-Jones DP (2005) Organization of chromatin in the interphase mammalian cell. Micron 36:95-108
-
(2005)
Micron
, vol.36
, pp. 95-108
-
-
Dehghani, H.1
Dellaire, G.2
Bazett-Jones, D.P.3
-
20
-
-
0035985190
-
Recruitment of dioxin receptor to active transcription sites
-
Elbi C, Misteli T, Hager GL (2002) Recruitment of dioxin receptor to active transcription sites. Mol Biol Cell 13:2001-2015
-
(2002)
Mol Biol Cell
, vol.13
, pp. 2001-2015
-
-
Elbi, C.1
Misteli, T.2
Hager, G.L.3
-
21
-
-
0015023787
-
Inhibition of nucleolar RNP synthesis by cycloheximide as studied by high resolution radioautography
-
Fakan S (1971) Inhibition of nucleolar RNP synthesis by cycloheximide as studied by high resolution radioautography. J Ultrastruct Res 34:586-596
-
(1971)
J Ultrastruct Res
, vol.34
, pp. 586-596
-
-
Fakan, S.1
-
22
-
-
33748432578
-
Transcriptional control thrown for a loop
-
Fraser P (2006) Transcriptional control thrown for a loop. Curr Opin Genet Dev 16:490-495
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 490-495
-
-
Fraser, P.1
-
23
-
-
0036591890
-
Replication timing and transcriptional control: Beyond cause and effect
-
Gilbert DM (2002) Replication timing and transcriptional control: Beyond cause and effect. Curr Opin Cell Biol 14:377-383
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 377-383
-
-
Gilbert, D.M.1
-
24
-
-
0021362841
-
Replication timing of genes and middle repetitive sequences
-
Goldman MA, Holmquist GP, Gray MC, Caston LA, Nag A (1984) Replication timing of genes and middle repetitive sequences. Science 224:686-692
-
(1984)
Science
, vol.224
, pp. 686-692
-
-
Goldman, M.A.1
Holmquist, G.P.2
Gray, M.C.3
Caston, L.A.4
Nag, A.5
-
26
-
-
0343683416
-
Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II
-
Grande MA, van der Kraan I, de Jong L, van Driel R (1997) Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II. J Cell Sci 110(Pt 15):1781-1791
-
(1997)
J Cell Sci
, vol.110
, Issue.PART 15
, pp. 1781-1791
-
-
Grande, M.A.1
van der Kraan, I.2
de Jong, L.3
van Driel, R.4
-
27
-
-
0036861933
-
Transcription factors RUNX1/AML1 and RUNX2/Cbfa1 dynamically associate with stationary subnuclear domains
-
Harrington KS, Javed A, Drissi H, McNeil S, Lian JB, Stein JL, Van Wijnen AJ, Wang YL, Stein GS (2002) Transcription factors RUNX1/AML1 and RUNX2/Cbfa1 dynamically associate with stationary subnuclear domains. J Cell Sci 115:4167-4176
-
(2002)
J Cell Sci
, vol.115
, pp. 4167-4176
-
-
Harrington, K.S.1
Javed, A.2
Drissi, H.3
McNeil, S.4
Lian, J.B.5
Stein, J.L.6
Van Wijnen, A.J.7
Wang, Y.L.8
Stein, G.S.9
-
28
-
-
0023903722
-
Replication program of active and inactive multigene families in mammalian cells
-
Hatton KS, Dhar V, Brown EH, Iqbal MA, Stuart S, Didamo VT, Schildkraut CL (1988) Replication program of active and inactive multigene families in mammalian cells. Mol Cell Biol 8:2149-2158
-
(1988)
Mol Cell Biol
, vol.8
, pp. 2149-2158
-
-
Hatton, K.S.1
Dhar, V.2
Brown, E.H.3
Iqbal, M.A.4
Stuart, S.5
Didamo, V.T.6
Schildkraut, C.L.7
-
29
-
-
33645744259
-
Sp1 and Sp3 foci distribution throughout mitosis
-
He S, Davie JR (2006) Sp1 and Sp3 foci distribution throughout mitosis. J Cell Sci 119:1063-1070
-
(2006)
J Cell Sci
, vol.119
, pp. 1063-1070
-
-
He, S.1
Davie, J.R.2
-
30
-
-
24344445230
-
Differential intranuclear organization of transcription factors Sp1 and Sp3
-
He S, Sun JM, Li L, Davie JR (2005) Differential intranuclear organization of transcription factors Sp1 and Sp3. Mol Biol Cell 16:4073-4083
-
(2005)
Mol Biol Cell
, vol.16
, pp. 4073-4083
-
-
He, S.1
Sun, J.M.2
Li, L.3
Davie, J.R.4
-
31
-
-
0029973080
-
Active RNA polymerases are localized within discrete transcription 'factories'. in human nuclei
-
Iborra FJ, Pombo A, Jackson DA, Cook PR (1996) Active RNA polymerases are localized within discrete transcription 'factories' in human nuclei. J Cell Sci 109(Pt 6):1427-1436
-
(1996)
J Cell Sci
, vol.109
, Issue.PART 6
, pp. 1427-1436
-
-
Iborra, F.J.1
Pombo, A.2
Jackson, D.A.3
Cook, P.R.4
-
32
-
-
0032559794
-
Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells
-
Jackson DA, Pombo A (1998) Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells. J Cell Biol 140:1285-1295
-
(1998)
J Cell Biol
, vol.140
, pp. 1285-1295
-
-
Jackson, D.A.1
Pombo, A.2
-
33
-
-
0027499230
-
Visualization of focal sites of transcription within human nuclei
-
Jackson DA, Hassan AB, Errington RJ, Cook PR (1993) Visualization of focal sites of transcription within human nuclei. EMBO J 12:1059-1065
-
(1993)
EMBO J
, vol.12
, pp. 1059-1065
-
-
Jackson, D.A.1
Hassan, A.B.2
Errington, R.J.3
Cook, P.R.4
-
34
-
-
0031813779
-
Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei
-
Jackson DA, Iborra FJ, Manders EM, Cook PR (1998) Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei. Mol Biol Cell 9:1523-1536
-
(1998)
Mol Biol Cell
, vol.9
, pp. 1523-1536
-
-
Jackson, D.A.1
Iborra, F.J.2
Manders, E.M.3
Cook, P.R.4
-
35
-
-
0033972791
-
The balance sheet for transcription: An analysis of nuclear RNA metabolism in mammalian cells
-
Jackson DA, Pombo A, Iborra F (2000) The balance sheet for transcription: An analysis of nuclear RNA metabolism in mammalian cells. FASEB J 14:242-254
-
(2000)
FASEB J
, vol.14
, pp. 242-254
-
-
Jackson, D.A.1
Pombo, A.2
Iborra, F.3
-
36
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
-
Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T (2007) Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions. Nat Rev 8:104-115
-
(2007)
Nat Rev
, vol.8
, pp. 104-115
-
-
Lanctot, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
37
-
-
0037213715
-
Gene expression and the myth of the average cell
-
Levsky JM, Singer RH (2003) Gene expression and the myth of the average cell. Trends Cell Biol 13:4-6
-
(2003)
Trends Cell Biol
, vol.13
, pp. 4-6
-
-
Levsky, J.M.1
Singer, R.H.2
-
39
-
-
35048814604
-
The spatial order of transcription in mammalian cells
-
Levsky JM, Shenoy SM, Chubb JR, Hall CB, Capodieci P, Singer RH (2007) The spatial order of transcription in mammalian cells. J Cell Biochem 102:609-617
-
(2007)
J Cell Biochem
, vol.102
, pp. 609-617
-
-
Levsky, J.M.1
Shenoy, S.M.2
Chubb, J.R.3
Hall, C.B.4
Capodieci, P.5
Singer, R.H.6
-
40
-
-
33845987376
-
Networks and hubs for the transcriptional control of osteoblastogenesis
-
Lian JB, Stein GS, Javed A, van Wijnen AJ, Stein JL, Montecino M, Hassan MQ, Gaur T, Lengner CJ, Young DW (2006) Networks and hubs for the transcriptional control of osteoblastogenesis. Rev Endocr Metab Disord 7:1-16
-
(2006)
Rev Endocr Metab Disord
, vol.7
, pp. 1-16
-
-
Lian, J.B.1
Stein, G.S.2
Javed, A.3
van Wijnen, A.J.4
Stein, J.L.5
Montecino, M.6
Hassan, M.Q.7
Gaur, T.8
Lengner, C.J.9
Young, D.W.10
-
41
-
-
33645814398
-
CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/ Nf1
-
Ling JQ, Li T, Hu JF, Vu TH, Chen HL, Qiu XW, Cherry AM, Hoffman AR (2006) CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312:269-272
-
(2006)
Science
, vol.312
, pp. 269-272
-
-
Ling, J.Q.1
Li, T.2
Hu, J.F.3
Vu, T.H.4
Chen, H.L.5
Qiu, X.W.6
Cherry, A.M.7
Hoffman, A.R.8
-
42
-
-
0032517784
-
Spatial and temporal dynamics of DNA replication sites in mammalian cells
-
Ma H, Samarabandu J, Devdhar RS, Acharya R, Cheng PC, Meng C, Berezney R (1998) Spatial and temporal dynamics of DNA replication sites in mammalian cells. J Cell Biol 143:1415-1425
-
(1998)
J Cell Biol
, vol.143
, pp. 1415-1425
-
-
Ma, H.1
Samarabandu, J.2
Devdhar, R.S.3
Acharya, R.4
Cheng, P.C.5
Meng, C.6
Berezney, R.7
-
43
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine DM, Rodriguez HK, Bell SP (2004) Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18:3094-3105
-
(2004)
Genes Dev
, vol.18
, pp. 3094-3105
-
-
MacAlpine, D.M.1
Rodriguez, H.K.2
Bell, S.P.3
-
44
-
-
0037049548
-
Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH
-
Mahy NL, Perry PE, Bickmore WA (2002a) Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH. J Cell Biol 159:753-763
-
(2002)
J Cell Biol
, vol.159
, pp. 753-763
-
-
Mahy, N.L.1
Perry, P.E.2
Bickmore, W.A.3
-
45
-
-
0037071535
-
Spatial organization of active and inactive genes and noncoding DNA within chromosome territories
-
Mahy NL, Perry PE, Gilchrist S, Baldock RA, Bickmore WA (2002b) Spatial organization of active and inactive genes and noncoding DNA within chromosome territories. J Cell Biol 157:579-589
-
(2002)
J Cell Biol
, vol.157
, pp. 579-589
-
-
Mahy, N.L.1
Perry, P.E.2
Gilchrist, S.3
Baldock, R.A.4
Bickmore, W.A.5
-
46
-
-
33750451584
-
The transcriptional regulator CBP has defined spatial associations within interphase nuclei
-
McManus KJ, Stephens DA, Adams NM, Islam SA, Freemont PS, Hendzel MJ (2006) The transcriptional regulator CBP has defined spatial associations within interphase nuclei. PLoS Comput Biol 2:e139
-
(2006)
PLoS Comput Biol
, vol.2
-
-
McManus, K.J.1
Stephens, D.A.2
Adams, N.M.3
Islam, S.A.4
Freemont, P.S.5
Hendzel, M.J.6
-
47
-
-
0038505671
-
Epigenomic replication: Linking epigenetics to DNA replication
-
McNairn AJ, Gilbert DM (2003) Epigenomic replication: Linking epigenetics to DNA replication. Bioessays 25:647-656
-
(2003)
Bioessays
, vol.25
, pp. 647-656
-
-
McNairn, A.J.1
Gilbert, D.M.2
-
48
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
Mitchell JA, Fraser P (2008) Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev 22:20-25
-
(2008)
Genes Dev
, vol.22
, pp. 20-25
-
-
Mitchell, J.A.1
Fraser, P.2
-
49
-
-
0029775622
-
A hyperphosphorylated form of the large subunit of RNA polymerase II is associated with splicing complexes and the nuclear matrix
-
Mortillaro MJ, Blencowe BJ, Wei X, Nakayasu H, Du L, Warren SL, Sharp PA, Berezney R (1996) A hyperphosphorylated form of the large subunit of RNA polymerase II is associated with splicing complexes and the nuclear matrix. Proc Natl Acad Sci U S A 93:8253-8257
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 8253-8257
-
-
Mortillaro, M.J.1
Blencowe, B.J.2
Wei, X.3
Nakayasu, H.4
Du, L.5
Warren, S.L.6
Sharp, P.A.7
Berezney, R.8
-
50
-
-
0022504648
-
Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus
-
Nakamura H, Morita T, Sato C (1986) Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus. Exp Cell Res 165:291-297
-
(1986)
Exp Cell Res
, vol.165
, pp. 291-297
-
-
Nakamura, H.1
Morita, T.2
Sato, C.3
-
51
-
-
0024526184
-
Mapping replicational sites in the eukaryotic cell nucleus
-
Nakayasu H, Berezney R (1989) Mapping replicational sites in the eukaryotic cell nucleus. J Cell Biol 108:1-11
-
(1989)
J Cell Biol
, vol.108
, pp. 1-11
-
-
Nakayasu, H.1
Berezney, R.2
-
52
-
-
40749162732
-
Nuclear receptor-enhanced transcription requires motor- and LSD1-dependent gene networking in interchromatin granules
-
Nunez E, Kwon YS, Hutt KR, Hu Q, Cardamone MD, Ohgi KA, Garcia-Bassets I, Rose DW, Glass CK, Rosenfeld MG, Fu XD (2008) Nuclear receptor-enhanced transcription requires motor- and LSD1-dependent gene networking in interchromatin granules. Cell 132:996-1010
-
(2008)
Cell
, vol.132
, pp. 996-1010
-
-
Nunez, E.1
Kwon, Y.S.2
Hutt, K.R.3
Hu, Q.4
Cardamone, M.D.5
Ohgi, K.A.6
Garcia-Bassets, I.7
Rose, D.W.8
Glass, C.K.9
Rosenfeld, M.G.10
Fu, X.D.11
-
53
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, Fraser P (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 36:1065-1071
-
(2004)
Nat Genet
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
Fraser, P.11
-
54
-
-
0032548846
-
Growth-related changes in phosphorylation of yeast RNA polymerase II
-
Patturajan M, Schulte RJ, Sefton BM, Berezney R, Vincent M, Bensaude O, Warren SL, Corden JL (1998) Growth-related changes in phosphorylation of yeast RNA polymerase II. J Biol Chem 273:4689-4694
-
(1998)
J Biol Chem
, vol.273
, pp. 4689-4694
-
-
Patturajan, M.1
Schulte, R.J.2
Sefton, B.M.3
Berezney, R.4
Vincent, M.5
Bensaude, O.6
Warren, S.L.7
Corden, J.L.8
-
55
-
-
0034062751
-
Specialized transcription factories within mammalian nuclei
-
Pombo A, Jones E, Iborra FJ, Kimura H, Sugaya K, Cook PR, Jackson DA (2000) Specialized transcription factories within mammalian nuclei. Crit Rev Eukaryot Gene Expr 10:21-29
-
(2000)
Crit Rev Eukaryot Gene Expr
, vol.10
, pp. 21-29
-
-
Pombo, A.1
Jones, E.2
Iborra, F.J.3
Kimura, H.4
Sugaya, K.5
Cook, P.R.6
Jackson, D.A.7
-
56
-
-
0042378999
-
A genetic analysis of chromosome territory looping: Diverse roles for distal regulatory elements
-
Ragoczy T, Telling A, Sawado T, Groudine M, Kosak ST (2003) A genetic analysis of chromosome territory looping: Diverse roles for distal regulatory elements. Chromosome Res 11:513-525
-
(2003)
Chromosome Res
, vol.11
, pp. 513-525
-
-
Ragoczy, T.1
Telling, A.2
Sawado, T.3
Groudine, M.4
Kosak, S.T.5
-
57
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol 4:e309
-
(2006)
PLoS Biol
, vol.4
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
58
-
-
0028328719
-
Transcription of individual genes in eukaryotic cells occurs randomly and infrequently
-
Ross IL, Browne CM, Hume DA (1994) Transcription of individual genes in eukaryotic cells occurs randomly and infrequently. Immunol Cell Biol 72:177-185
-
(1994)
Immunol Cell Biol
, vol.72
, pp. 177-185
-
-
Ross, I.L.1
Browne, C.M.2
Hume, D.A.3
-
59
-
-
9444269829
-
Stable chromosomal units determine the spatial and temporal organization of DNA replication
-
Sadoni N, Cardoso MC, Stelzer EH, Leonhardt H, Zink D (2004) Stable chromosomal units determine the spatial and temporal organization of DNA replication. J Cell Sci 117:5353-5365
-
(2004)
J Cell Sci
, vol.117
, pp. 5353-5365
-
-
Sadoni, N.1
Cardoso, M.C.2
Stelzer, E.H.3
Leonhardt, H.4
Zink, D.5
-
60
-
-
23244460363
-
Organization of transcriptional regulatory machinery in osteoclast nuclei: Compartmentalization of Runx1
-
Saltman LH, Javed A, Ribadeneyra J, Hussain S, Young DW, Osdoby P, Amcheslavsky A, van Wijnen AJ, Stein JL, Stein GS, Lian JB, Bar-Shavit Z (2005) Organization of transcriptional regulatory machinery in osteoclast nuclei: Compartmentalization of Runx1. J Cell Physiol 204:871-880
-
(2005)
J Cell Physiol
, vol.204
, pp. 871-880
-
-
Saltman, L.H.1
Javed, A.2
Ribadeneyra, J.3
Hussain, S.4
Young, D.W.5
Osdoby, P.6
Amcheslavsky, A.7
van Wijnen, A.J.8
Stein, J.L.9
Stein, G.S.10
Lian, J.B.11
Bar-Shavit, Z.12
-
61
-
-
0005760649
-
Image analysis techniques for visualizing the spatial organization of DNA replication sites in the mammalian cell nucleus using multi-channel confocal microscopy
-
Samarabandu J, Ma H, Acharya R, Cheng PC, Berezney R (1995) Image analysis techniques for visualizing the spatial organization of DNA replication sites in the mammalian cell nucleus using multi-channel confocal microscopy. SPIE 2434:370-375
-
(1995)
SPIE
, vol.2434
, pp. 370-375
-
-
Samarabandu, J.1
Ma, H.2
Acharya, R.3
Cheng, P.C.4
Berezney, R.5
-
62
-
-
0036842221
-
Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing
-
Schubeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, Groudine M (2002) Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing. Nat Genet 32:438-442
-
(2002)
Nat Genet
, vol.32
, pp. 438-442
-
-
Schubeler, D.1
Scalzo, D.2
Kooperberg, C.3
van Steensel, B.4
Delrow, J.5
Groudine, M.6
-
63
-
-
33644861248
-
A question of timing: Emerging links between transcription and replication
-
Schwaiger M, Schubeler D (2006) A question of timing: Emerging links between transcription and replication. Curr Opin Genet Dev 16:177-183
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 177-183
-
-
Schwaiger, M.1
Schubeler, D.2
-
64
-
-
33747615285
-
Gene expression within a dynamic nuclear landscape
-
Shav-Tal Y, Darzacq X, Singer RH (2006) Gene expression within a dynamic nuclear landscape. EMBO J 25:3469-3479
-
(2006)
EMBO J
, vol.25
, pp. 3469-3479
-
-
Shav-Tal, Y.1
Darzacq, X.2
Singer, R.H.3
-
65
-
-
0028090269
-
Replicon clusters may form structurally stable complexes of chromatin and chromosomes
-
Sparvoli E, Levi M, Rossi E (1994) Replicon clusters may form structurally stable complexes of chromatin and chromosomes. J Cell Sci 107(Pt 11):3097-3103
-
(1994)
J Cell Sci
, vol.107
, Issue.PART 11
, pp. 3097-3103
-
-
Sparvoli, E.1
Levi, M.2
Rossi, E.3
-
66
-
-
0027135889
-
Macromolecular domains within the cell nucleus
-
Spector DL (1993) Macromolecular domains within the cell nucleus. Annu Rev Cell Biol 9:265-315
-
(1993)
Annu Rev Cell Biol
, vol.9
, pp. 265-315
-
-
Spector, D.L.1
-
67
-
-
0142157505
-
Functional architecture of the nucleus: Organizing the regulatory machinery for gene expression, replication and repair
-
Stein GS, Zaidi SK, Braastad CD, Montecino M, van Wijnen AJ, Choi JY, Stein JL, Lian JB, Javed A (2003) Functional architecture of the nucleus: Organizing the regulatory machinery for gene expression, replication and repair. Trends Cell Biol 13:584-592
-
(2003)
Trends Cell Biol
, vol.13
, pp. 584-592
-
-
Stein, G.S.1
Zaidi, S.K.2
Braastad, C.D.3
Montecino, M.4
van Wijnen, A.J.5
Choi, J.Y.6
Stein, J.L.7
Lian, J.B.8
Javed, A.9
-
68
-
-
28444473049
-
Combinatorial organization of the transcriptional regulatory machinery in biological control and cancer
-
Stein GS, Lian JB, Stein JL, van Wijnen AJ, Javed A, Montecino M, Zaidi SK, Young DW, Choi JY, Pratap J (2005) Combinatorial organization of the transcriptional regulatory machinery in biological control and cancer. Adv Enzyme Regul 45:136-154
-
(2005)
Adv Enzyme Regul
, vol.45
, pp. 136-154
-
-
Stein, G.S.1
Lian, J.B.2
Stein, J.L.3
van Wijnen, A.J.4
Javed, A.5
Montecino, M.6
Zaidi, S.K.7
Young, D.W.8
Choi, J.Y.9
Pratap, J.10
-
69
-
-
34548171728
-
Organization of transcriptional regulatory machinery in nuclear microenvironments: Implications for biological control and cancer. Adv
-
Stein GS, Lian JB, van Wijnen AJ, Stein JL, Javed A, Montecino M, Choi JY, Vradii D, Zaidi SK, Pratap J, Young D (2007) Organization of transcriptional regulatory machinery in nuclear microenvironments: implications for biological control and cancer. Adv Enzyme Regul 47:242-250
-
(2007)
Enzyme Regul
, vol.47
, pp. 242-250
-
-
Stein, G.S.1
Lian, J.B.2
van Wijnen, A.J.3
Stein, J.L.4
Javed, A.5
Montecino, M.6
Choi, J.Y.7
Vradii, D.8
Zaidi, S.K.9
Pratap, J.10
Young, D.11
-
70
-
-
0035150980
-
Interphase movements of a DNA chromosome region modulated by VP16 transcriptional activator
-
Tumbar T, Belmont AS (2001) Interphase movements of a DNA chromosome region modulated by VP16 transcriptional activator. Nat Cell Biol 3:134-139
-
(2001)
Nat Cell Biol
, vol.3
, pp. 134-139
-
-
Tumbar, T.1
Belmont, A.S.2
-
71
-
-
0029935163
-
Partial colocalization of glucocorticoid and mineralocorticoid receptors in discrete compartments in nuclei of rat hippocampus neurons
-
van Steensel B, van Binnendijk EP, Hornsby CD, van der Voort HT, Krozowski ZS, de Kloet ER, van Driel R (1996) Partial colocalization of glucocorticoid and mineralocorticoid receptors in discrete compartments in nuclei of rat hippocampus neurons. J Cell Sci 109(Pt 4):787-792
-
(1996)
J Cell Sci
, vol.109
, Issue.PART 4
, pp. 787-792
-
-
van Steensel, B.1
van Binnendijk, E.P.2
Hornsby, C.D.3
van der Voort, H.T.4
Krozowski, Z.S.5
de Kloet, E.R.6
van Driel, R.7
-
72
-
-
0034065032
-
Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei
-
Volpi EV, Chevret E, Jones T, Vatcheva R, Williamson J, Beck S, Campbell RD, Goldsworthy M, Powis SH, Ragoussis J, Trowsdale J, Sheer D (2000) Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei. J Cell Sci 113(Pt 9):1565-1576
-
(2000)
J Cell Sci
, vol.113
, Issue.PART 9
, pp. 1565-1576
-
-
Volpi, E.V.1
Chevret, E.2
Jones, T.3
Vatcheva, R.4
Williamson, J.5
Beck, S.6
Campbell, R.D.7
Goldsworthy, M.8
Powis, S.H.9
Ragoussis, J.10
Trowsdale, J.11
Sheer, D.12
-
73
-
-
0027305616
-
Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus
-
Wansink DG, Schul W, van der Kraan I, van Steensel B, van Driel R, de Jong L (1993) Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus. J Cell Biol 122:283-293
-
(1993)
J Cell Biol
, vol.122
, pp. 283-293
-
-
Wansink, D.G.1
Schul, W.2
van der Kraan, I.3
van Steensel, B.4
van Driel, R.5
de Jong, L.6
-
74
-
-
0028243081
-
RNA polymerase II transcription is concentrated outside replication domains throughout S-phase
-
Wansink DG, Manders EE, van der Kraan I, Aten JA, van Driel R, de Jong L (1994) RNA polymerase II transcription is concentrated outside replication domains throughout S-phase. J Cell Sci 107(Pt 6):1449-1456
-
(1994)
J Cell Sci
, vol.107
, Issue.PART 6
, pp. 1449-1456
-
-
Wansink, D.G.1
Manders, E.E.2
van der Kraan, I.3
Aten, J.A.4
van Driel, R.5
de Jong, L.6
-
75
-
-
0029826893
-
Ultrastructural localization of active genes in nuclei of A431 cells
-
Wansink DG, Sibon OC, Cremers FF, van Driel R, de Jong L (1996) Ultrastructural localization of active genes in nuclei of A431 cells. J Cell Biochem 62:10-18
-
(1996)
J Cell Biochem
, vol.62
, pp. 10-18
-
-
Wansink, D.G.1
Sibon, O.C.2
Cremers, F.F.3
van Driel, R.4
de Jong, L.5
-
76
-
-
0026484357
-
Cytostellin: A novel, highly conserved protein that undergoes continuous redistribution during the cell cycle
-
Warren SL, Landolfi AS, Curtis C, Morrow JS (1992) Cytostellin: A novel, highly conserved protein that undergoes continuous redistribution during the cell cycle. J Cell Sci 103(Pt 2):381-388
-
(1992)
J Cell Sci
, vol.103
, Issue.PART 2
, pp. 381-388
-
-
Warren, S.L.1
Landolfi, A.S.2
Curtis, C.3
Morrow, J.S.4
-
77
-
-
0032483372
-
Segregation of transcription and replication sites into higher order domains
-
Wei X, Samarabandu J, Devdhar RS, Siegel AJ, Acharya R, Berezney R (1998) Segregation of transcription and replication sites into higher order domains. Science 281:1502-1506
-
(1998)
Science
, vol.281
, pp. 1502-1506
-
-
Wei, X.1
Samarabandu, J.2
Devdhar, R.S.3
Siegel, A.J.4
Acharya, R.5
Berezney, R.6
-
78
-
-
0033538831
-
Three-dimensional visualization of transcription sites and their association with splicing factor-rich nuclear speckles
-
Wei X, Somanathan S, Samarabandu J, Berezney R (1999) Three-dimensional visualization of transcription sites and their association with splicing factor-rich nuclear speckles. J Cell Biol 146:543-558
-
(1999)
J Cell Biol
, vol.146
, pp. 543-558
-
-
Wei, X.1
Somanathan, S.2
Samarabandu, J.3
Berezney, R.4
-
79
-
-
17444369067
-
Remote control of gene transcription
-
Spec No
-
West AG, Fraser P (2005) Remote control of gene transcription. Hum Mol Genet 14 Spec No 1:R101-111
-
(2005)
Hum Mol Genet
, vol.14
, Issue.1
-
-
West, A.G.1
Fraser, P.2
-
80
-
-
1642514822
-
Replication timing of the human genome
-
Woodfine K, Fiegler H, Beare DM, Collins JE, McCann OT, Young BD, Debernardi S, Mott R, Dunham I, Carter NP (2004) Replication timing of the human genome. Hum Mol Genet 13:191-202
-
(2004)
Hum Mol Genet
, vol.13
, pp. 191-202
-
-
Woodfine, K.1
Fiegler, H.2
Beare, D.M.3
Collins, J.E.4
McCann, O.T.5
Young, B.D.6
Debernardi, S.7
Mott, R.8
Dunham, I.9
Carter, N.P.10
-
81
-
-
20044396719
-
The dynamic organization of gene-regulatory machinery in nuclear microenvironments
-
Zaidi SK, Young DW, Choi JY, Pratap J, Javed A, Montecino M, Stein JL, van Wijnen AJ, Lian JB, Stein GS (2005) The dynamic organization of gene-regulatory machinery in nuclear microenvironments. EMBO Rep 6:128-133
-
(2005)
EMBO Rep
, vol.6
, pp. 128-133
-
-
Zaidi, S.K.1
Young, D.W.2
Choi, J.Y.3
Pratap, J.4
Javed, A.5
Montecino, M.6
Stein, J.L.7
van Wijnen, A.J.8
Lian, J.B.9
Stein, G.S.10
-
82
-
-
33750495807
-
Alterations in intranuclear localization of Runx2 affect biological activity
-
Zaidi SK, Javed A, Pratap J, Schroeder TMJJW, Lian JB, van Wijnen AJ, Stein GS, Stein JL (2006) Alterations in intranuclear localization of Runx2 affect biological activity. J Cell Physiol 209:935-942
-
(2006)
J Cell Physiol
, vol.209
, pp. 935-942
-
-
Zaidi, S.K.1
Javed, A.2
Pratap, J.3
Schroeder, T.M.J.J.W.4
Lian, J.B.5
van Wijnen, A.J.6
Stein, G.S.7
Stein, J.L.8
-
83
-
-
34249334327
-
Nuclear microenvironments in biological control and cancer
-
Zaidi SK, Young DW, Javed A, Pratap J, Montecino M, van Wijnen A, Lian JB, Stein JL, Stein GS (2007) Nuclear microenvironments in biological control and cancer. Nat Rev Cancer 7:454-463
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 454-463
-
-
Zaidi, S.K.1
Young, D.W.2
Javed, A.3
Pratap, J.4
Montecino, M.5
van Wijnen, A.6
Lian, J.B.7
Stein, J.L.8
Stein, G.S.9
-
84
-
-
0030909002
-
Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity
-
Zeng C, Kim E, Warren SL, Berget SM (1997) Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity. EMBO J 16:1401-1412
-
(1997)
EMBO J
, vol.16
, pp. 1401-1412
-
-
Zeng, C.1
Kim, E.2
Warren, S.L.3
Berget, S.M.4
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