메뉴 건너뛰기




Volumn 317, Issue 4, 2011, Pages 433-444

Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei

Author keywords

In situ hybridization; Nuclear architecture; Perichromatin region; Transcribed DNA; Ultrastructural

Indexed keywords

COMPLEMENTARY DNA; COMPLEMENTARY RNA; DNA; MESSENGER RNA; RNA; RNA POLYMERASE II;

EID: 78651421795     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2010.10.026     Document Type: Article
Times cited : (36)

References (45)
  • 1
    • 0030589683 scopus 로고    scopus 로고
    • Ultrastructure of the nucleus in relation to transcription and splicing: roles of perichromatin fibrils and interchromatin granules
    • Puvion E., PuvionDutilleul F. Ultrastructure of the nucleus in relation to transcription and splicing: roles of perichromatin fibrils and interchromatin granules. Exp. Cell Res. 1996, 229:217-225.
    • (1996) Exp. Cell Res. , vol.229 , pp. 217-225
    • Puvion, E.1    PuvionDutilleul, F.2
  • 2
    • 4544304312 scopus 로고    scopus 로고
    • The functional architecture of the nucleus as analysed by ultrastructural cytochemistry
    • Fakan S. The functional architecture of the nucleus as analysed by ultrastructural cytochemistry. Histochem. Cell Biol. 2004, 122:83-93.
    • (2004) Histochem. Cell Biol. , vol.122 , pp. 83-93
    • Fakan, S.1
  • 3
    • 35649020707 scopus 로고    scopus 로고
    • The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding
    • Fakan S., van Driel R. The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding. Semin. Cell Dev. Biol. 2007, 18:676-681.
    • (2007) Semin. Cell Dev. Biol. , vol.18 , pp. 676-681
    • Fakan, S.1    van Driel, R.2
  • 4
    • 62149151774 scopus 로고    scopus 로고
    • Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus
    • Solimando L., Luijsterburg M.S., Vecchio L., Vermeulen W., van Driel R., Fakan S. Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus. J. Cell Sci. 2009, 122:83-91.
    • (2009) J. Cell Sci. , vol.122 , pp. 83-91
    • Solimando, L.1    Luijsterburg, M.S.2    Vecchio, L.3    Vermeulen, W.4    van Driel, R.5    Fakan, S.6
  • 5
    • 0015091214 scopus 로고
    • Localisation of rapidly and slowly labelled nuclear RNA as visualized by high resolution autoradiography
    • Fakan S., Bernhard W. Localisation of rapidly and slowly labelled nuclear RNA as visualized by high resolution autoradiography. Exp. Cell Res. 1971, 67:129-141.
    • (1971) Exp. Cell Res. , vol.67 , pp. 129-141
    • Fakan, S.1    Bernhard, W.2
  • 6
    • 0014510121 scopus 로고
    • Fine structural organization of the interphase nucleus in some mammalian cells
    • Monneron A., Bernhard W. Fine structural organization of the interphase nucleus in some mammalian cells. J. Ultrastruct. Res. 1969, 27:266-288.
    • (1969) J. Ultrastruct. Res. , vol.27 , pp. 266-288
    • Monneron, A.1    Bernhard, W.2
  • 7
    • 0014510120 scopus 로고
    • A new staining procedure for electron microscopical cytology
    • Bernhard W. A new staining procedure for electron microscopical cytology. J. Ultrastruct. Res. 1969, 27:250-265.
    • (1969) J. Ultrastruct. Res. , vol.27 , pp. 250-265
    • Bernhard, W.1
  • 8
    • 0016776807 scopus 로고
    • Perichromatin fibrils as components of rapidly labeled extranucleolar RNA
    • Nash R.E., Puvion E., Bernhard W. Perichromatin fibrils as components of rapidly labeled extranucleolar RNA. J. Ultrastruct. Res. 1975, 53:395-405.
    • (1975) J. Ultrastruct. Res. , vol.53 , pp. 395-405
    • Nash, R.E.1    Puvion, E.2    Bernhard, W.3
  • 9
    • 0017169932 scopus 로고
    • Localization and characterization of newly synthesized nuclear RNA in isolated rat hepatocytes
    • Fakan S., Puvion E., Spohr G. Localization and characterization of newly synthesized nuclear RNA in isolated rat hepatocytes. Exp. Cell Res. 1976, 99:155-164.
    • (1976) Exp. Cell Res. , vol.99 , pp. 155-164
    • Fakan, S.1    Puvion, E.2    Spohr, G.3
  • 10
    • 0028158279 scopus 로고
    • Perichromatin fibrils are in situ forms of nascent transcripts
    • Fakan S. Perichromatin fibrils are in situ forms of nascent transcripts. Trends Cell Biol. 1994, 4:86-90.
    • (1994) Trends Cell Biol. , vol.4 , pp. 86-90
    • Fakan, S.1
  • 11
    • 0030589482 scopus 로고    scopus 로고
    • Nuclear organization and gene expression
    • Spector D.L. Nuclear organization and gene expression. Exp. Cell Res. 1996, 229:189-197.
    • (1996) Exp. Cell Res. , vol.229 , pp. 189-197
    • Spector, D.L.1
  • 12
    • 0042767995 scopus 로고    scopus 로고
    • The dynamics of chromosome organization and gene regulation
    • Spector D.L. The dynamics of chromosome organization and gene regulation. Annu. Rev. Biochem. 2003, 72:573-608.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 573-608
    • Spector, D.L.1
  • 16
    • 0021334795 scopus 로고
    • Ultrastructural distribution of nuclear ribonucleoproteins as visualized by immunocytochemistry on thin sections
    • Fakan S., Leser G., Martin T.E. Ultrastructural distribution of nuclear ribonucleoproteins as visualized by immunocytochemistry on thin sections. J. Cell Biol. 1984, 98:358-363.
    • (1984) J. Cell Biol. , vol.98 , pp. 358-363
    • Fakan, S.1    Leser, G.2    Martin, T.E.3
  • 17
    • 0025936626 scopus 로고
    • Associations between distinct pre-mRNA splicing components and the cell nucleus
    • Spector D.L., Fu X.D., Maniatis T. Associations between distinct pre-mRNA splicing components and the cell nucleus. EMBO J. 1991, 10:3467-3481.
    • (1991) EMBO J. , vol.10 , pp. 3467-3481
    • Spector, D.L.1    Fu, X.D.2    Maniatis, T.3
  • 18
    • 0141867857 scopus 로고    scopus 로고
    • Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms
    • Mattick J.S. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays 2003, 25:930-939.
    • (2003) Bioessays , vol.25 , pp. 930-939
    • Mattick, J.S.1
  • 19
    • 33846169089 scopus 로고    scopus 로고
    • Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum
    • Prasanth K.V., Spector D.L. Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev. 2007, 21:11-42.
    • (2007) Genes Dev. , vol.21 , pp. 11-42
    • Prasanth, K.V.1    Spector, D.L.2
  • 23
    • 60349107342 scopus 로고    scopus 로고
    • Visualisation of RNA by electron microscopic in situ hybridisation
    • Rouquette J., Kalland K.H., Fakan S. Visualisation of RNA by electron microscopic in situ hybridisation. Meth. Mol. Biol. 2009, 464:403-413.
    • (2009) Meth. Mol. Biol. , vol.464 , pp. 403-413
    • Rouquette, J.1    Kalland, K.H.2    Fakan, S.3
  • 24
    • 0015847493 scopus 로고
    • Mise évidence de l'ADN et des polysaccharides à l'aide d'un nouveau réactif "de type Schiff"
    • Cogliati R., Gautier A. Mise évidence de l'ADN et des polysaccharides à l'aide d'un nouveau réactif "de type Schiff". C. R. Acad. Sci. Paris Ser. D 1973, 276:3041-3044.
    • (1973) C. R. Acad. Sci. Paris Ser. D , vol.276 , pp. 3041-3044
    • Cogliati, R.1    Gautier, A.2
  • 25
    • 0027133037 scopus 로고
    • The study of the cell nucleus using cryofixation and cryosubstitution
    • von Schack M.L., Fakan S. The study of the cell nucleus using cryofixation and cryosubstitution. Micron 1993, 24:507-519.
    • (1993) Micron , vol.24 , pp. 507-519
    • von Schack, M.L.1    Fakan, S.2
  • 27
    • 0017111574 scopus 로고
    • Effects of alpha-amanitine on chromatin in regenerating rat hepatocytes: a biochemical and morphologic study
    • Derenzini M., Marinozzi V., Novello F. Effects of alpha-amanitine on chromatin in regenerating rat hepatocytes: a biochemical and morphologic study. Virchows Arch. 1976, 20:307-318.
    • (1976) Virchows Arch. , vol.20 , pp. 307-318
    • Derenzini, M.1    Marinozzi, V.2    Novello, F.3
  • 28
    • 37249005861 scopus 로고    scopus 로고
    • Use of halogenated precursors for simultaneous DNA and RNA detection by means of immunoelectron and immunofluorescence microscopy
    • Vecchio L., Solimando L., Biggiogera M., Fakan S. Use of halogenated precursors for simultaneous DNA and RNA detection by means of immunoelectron and immunofluorescence microscopy. J. Histochem. Cytochem. 2008, 56:45-55.
    • (2008) J. Histochem. Cytochem. , vol.56 , pp. 45-55
    • Vecchio, L.1    Solimando, L.2    Biggiogera, M.3    Fakan, S.4
  • 30
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • Branco M.R., Pombo A. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol. 2006, 4:e138.
    • (2006) PLoS Biol. , vol.4
    • Branco, M.R.1    Pombo, A.2
  • 31
    • 35648930913 scopus 로고    scopus 로고
    • The role of transcription factories in large-scale structure and dynamics of interphase chromatin
    • Sexton T., Umlauf D., Kurukuti S., Fraser P. The role of transcription factories in large-scale structure and dynamics of interphase chromatin. Semin. Cell Dev. Biol. 2007, 18:691-697.
    • (2007) Semin. Cell Dev. Biol. , vol.18 , pp. 691-697
    • Sexton, T.1    Umlauf, D.2    Kurukuti, S.3    Fraser, P.4
  • 32
    • 38149133051 scopus 로고    scopus 로고
    • Transcription factories are nuclear subcompartments that remain in the absence of transcription
    • Mitchell J.A., Fraser P. Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev. 2008, 22:20-25.
    • (2008) Genes Dev. , vol.22 , pp. 20-25
    • Mitchell, J.A.1    Fraser, P.2
  • 35
    • 34147112685 scopus 로고    scopus 로고
    • Noncoding RNA transcription beyond annotated genes
    • Carninci P., Hayashizaki Y. Noncoding RNA transcription beyond annotated genes. Curr. Opin. Gen. Developm. 2007, 17:139-144.
    • (2007) Curr. Opin. Gen. Developm. , vol.17 , pp. 139-144
    • Carninci, P.1    Hayashizaki, Y.2
  • 36
    • 0018166569 scopus 로고
    • Intranuclear migration of newly synthesized extranucleolar ribonucleoproteins. A high resolution quantitative autoradiographical and cytochemical study
    • Puvion E., Moyne G. Intranuclear migration of newly synthesized extranucleolar ribonucleoproteins. A high resolution quantitative autoradiographical and cytochemical study. Exp. Cell Res. 1978, 115:79-88.
    • (1978) Exp. Cell Res. , vol.115 , pp. 79-88
    • Puvion, E.1    Moyne, G.2
  • 37
    • 1842376906 scopus 로고    scopus 로고
    • The dynamics of a pre-mRNA splicing factor in living cells
    • Misteli T., Caceres J.F., Spector D.L. The dynamics of a pre-mRNA splicing factor in living cells. Nature 1997, 387:523-527.
    • (1997) Nature , vol.387 , pp. 523-527
    • Misteli, T.1    Caceres, J.F.2    Spector, D.L.3
  • 38
    • 0035912782 scopus 로고    scopus 로고
    • Assembly and transport of a premessenger RNP particle
    • Daneholt B. Assembly and transport of a premessenger RNP particle. Proc. Natl Acad. Sci. USA 2001, 98:7012-7017.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 7012-7017
    • Daneholt, B.1
  • 39
    • 0015117099 scopus 로고
    • Comparative ultrastructural study of perichromatin- and Balbiai rin granules
    • Vazquez-Nin G., Bernhard W. Comparative ultrastructural study of perichromatin- and Balbiai rin granules. J. Ultrastruct. Res. 1971, 36:842-860.
    • (1971) J. Ultrastruct. Res. , vol.36 , pp. 842-860
    • Vazquez-Nin, G.1    Bernhard, W.2
  • 40
  • 41
    • 0031281996 scopus 로고    scopus 로고
    • Effects of hypophyseal hormones on transcription and RNA export to the cytoplasm
    • Vazquez Nin G.H., Echeverria O.M., Ortiz R., Ubaldo E., Fakan S. Effects of hypophyseal hormones on transcription and RNA export to the cytoplasm. Exp. Cell Res. 1997, 236:519-526.
    • (1997) Exp. Cell Res. , vol.236 , pp. 519-526
    • Vazquez Nin, G.H.1    Echeverria, O.M.2    Ortiz, R.3    Ubaldo, E.4    Fakan, S.5
  • 44
    • 34147151617 scopus 로고    scopus 로고
    • A reaction-diffusion model to study RNA motion by quantitative fluorescence recovery after photobleaching
    • Braga J., McNally J.G., CarmoFonseca M. A reaction-diffusion model to study RNA motion by quantitative fluorescence recovery after photobleaching. Biophys. J. 2007, 92:2694-2703.
    • (2007) Biophys. J. , vol.92 , pp. 2694-2703
    • Braga, J.1    McNally, J.G.2    CarmoFonseca, M.3
  • 45
    • 0037439634 scopus 로고    scopus 로고
    • Polycomb group gene silencing proteins are concentrated in the perichromatin compartment of the mammalian nucleus
    • Cmarko D., Verschure P.J., Otte A.R., van Driel R., Fakan S. Polycomb group gene silencing proteins are concentrated in the perichromatin compartment of the mammalian nucleus. J. Cell Sci. 2003, 116:335-343.
    • (2003) J. Cell Sci. , vol.116 , pp. 335-343
    • Cmarko, D.1    Verschure, P.J.2    Otte, A.R.3    van Driel, R.4    Fakan, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.