메뉴 건너뛰기




Volumn 17, Issue 6, 2009, Pages 801-810

Revealing the high-resolution three-dimensional network of chromatin and interchromatin space: A novel electron-microscopic approach to reconstructing nuclear architecture

Author keywords

3D reconstruction; 3View; Chromatin; Electron microscopy; Interchromatin space; SBFSEM

Indexed keywords

DNA;

EID: 70349847560     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-009-9070-x     Document Type: Article
Times cited : (71)

References (33)
  • 3
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • DOI 10.1371/journal.pbio.0040138
    • MR Branco A Pombo 2006 Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations PLoS Biol 4 e138 16623600 10.1371/journal.pbio.0040138 (Pubitemid 43748224)
    • (2006) PLoS Biology , vol.4 , Issue.5 , pp. 780-788
    • Branco, M.R.1    Pombo, A.2
  • 4
    • 0032917782 scopus 로고    scopus 로고
    • Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection
    • 9880337 1:CAS:528:DyaK1MXitFKmtbw%3D
    • D Cmarko PJ Verschure TE Martin, et al. 1999 Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection Mol Biol Cell 10 211 223 9880337 1:CAS:528:DyaK1MXitFKmtbw%3D
    • (1999) Mol Biol Cell , vol.10 , pp. 211-223
    • Cmarko, D.1    Verschure, P.J.2    Martin, T.E.3
  • 5
    • 33646526019 scopus 로고    scopus 로고
    • Chromosome territories-a functional nuclear landscape
    • 16687245 10.1016/j.ceb.2006.04.007 1:CAS:528:DC%2BD28Xks1eqsbw%3D
    • T Cremer M Cremer S Dietzel S Muller I Solovei S Fakan 2006 Chromosome territories-a functional nuclear landscape Curr Opin Cell Biol 18 307 316 16687245 10.1016/j.ceb.2006.04.007 1:CAS:528:DC%2BD28Xks1eqsbw%3D
    • (2006) Curr Opin Cell Biol , vol.18 , pp. 307-316
    • Cremer, T.1    Cremer, M.2    Dietzel, S.3    Muller, S.4    Solovei, I.5    Fakan, S.6
  • 6
    • 41649097238 scopus 로고    scopus 로고
    • Nuclear lamins: Major factors in the structural organization and function of the nucleus and chromatin
    • 18381888 10.1101/gad.1652708 1:CAS:528:DC%2BD1cXksVGkt70%3D
    • T Dechat K Pfleghaar K Sengupta, et al. 2008 Nuclear lamins: major factors in the structural organization and function of the nucleus and chromatin Genes Dev 22 832 853 18381888 10.1101/gad.1652708 1:CAS:528: DC%2BD1cXksVGkt70%3D
    • (2008) Genes Dev , vol.22 , pp. 832-853
    • Dechat, T.1    Pfleghaar, K.2    Sengupta, K.3
  • 7
    • 14044262855 scopus 로고    scopus 로고
    • Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
    • DOI 10.1371/journal.pbio.0020329
    • W Denk H Horstmann 2004 Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure PLoS Biol 2 e329 15514700 10.1371/journal.pbio.0020329 (Pubitemid 40280487)
    • (2004) PLoS Biology , vol.2 , Issue.11
    • Denk, W.1    Horstmann, H.2
  • 8
    • 0018634069 scopus 로고
    • Fine structure of chromatin as visualized in thin sections with the Gautier selective stain for DNA
    • DOI 10.1016/S0022-5320(79)90113-8
    • M Derenzini 1979 Fine structure of chromatin as visualized in thin sections with the Gautier selective stain for DNA J Ultrastruct Res 69 239 248 90735 10.1016/S0022-5320(79)90113-8 1:STN:280:DyaL3c%2FivF2jsg%3D%3D (Pubitemid 10158852)
    • (1979) Journal of Ultrastructure Research , vol.69 , Issue.2 , pp. 239-248
    • Derenzini, M.1
  • 9
    • 0022615967 scopus 로고
    • Three-dimensional analysis of given cell structures: Nucleolus, nucleoskeleton and nuclear inclusions
    • 3007927 1:STN:280:DyaL287nsVegsA%3D%3D
    • AM Dupuy-Coin P Moens M Bouteille 1986 Three-dimensional analysis of given cell structures: nucleolus, nucleoskeleton and nuclear inclusions Methods Achiev Exp Pathol 12 1 25 3007927 1:STN:280:DyaL287nsVegsA%3D%3D
    • (1986) Methods Achiev Exp Pathol , vol.12 , pp. 1-25
    • Dupuy-Coin, A.M.1    Moens, P.2    Bouteille, M.3
  • 10
    • 0023272855 scopus 로고
    • A simple staining method for chromatin in electron microscopy compatible with serial sectioning
    • DOI 10.1016/0304-3991(87)90012-X
    • C Esquivel P Rovira O Echeverria GH Vazquez-Nin 1987 A simple staining method for chromatin in electron microscopy compatible with serial sectioning Ultramicroscopy 21 103 109 2435042 10.1016/0304-3991(87)90012-X 1:CAS:528:DyaL2sXhtlCmtLk%3D (Pubitemid 17218654)
    • (1987) Ultramicroscopy , vol.21 , Issue.1 , pp. 103-110
    • Esquivel, C.1    Rovira, P.2    Echeverria, O.3    Vazquez-Nin, G.H.4
  • 11
    • 0024423889 scopus 로고
    • Evidence of repetitive patterns of chromatin distribution in cell nuclei of rat liver
    • 10.1159/000146804 1:STN:280:DyaK3c%2Flt1anug%3D%3D
    • C Esquivel GH Vazquez-Nin O Echeverria 1989 Evidence of repetitive patterns of chromatin distribution in cell nuclei of rat liver Acta Anat (Basel) 136 94 98 10.1159/000146804 1:STN:280:DyaK3c%2Flt1anug%3D%3D
    • (1989) Acta Anat (Basel) , vol.136 , pp. 94-98
    • Esquivel, C.1    Vazquez-Nin, G.H.2    Echeverria, O.3
  • 12
    • 1942488260 scopus 로고    scopus 로고
    • Ultrastructural cytochemical analyses of nuclear functional architecture
    • S Fakan 2004 Ultrastructural cytochemical analyses of nuclear functional architecture Eur J Histochem 48 5 14 15145771 1:STN:280:DC%2BD2c3ks1yjsg%3D%3D (Pubitemid 38524331)
    • (2004) European Journal of Histochemistry , vol.48 , Issue.1 , pp. 5-14
    • Fakan, S.1
  • 13
    • 35649020707 scopus 로고    scopus 로고
    • The perichromatin region: A functional compartment in the nucleus that determines large-scale chromatin folding
    • DOI 10.1016/j.semcdb.2007.08.010, PII S1084952107001255, Membrane Lipid Microdomains: Roles in Signalling and Disease and 3D Chromatin
    • S Fakan R Van Driel 2007 The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding Semin Cell Dev Biol 18 676 681 17920313 10.1016/j.semcdb.2007.08.010 1:CAS:528:DC%2BD2sXht1Kjtr7M (Pubitemid 350026434)
    • (2007) Seminars in Cell and Developmental Biology , vol.18 , Issue.5 , pp. 676-681
    • Fakan, S.1    Van Driel, R.2
  • 14
    • 0024342151 scopus 로고
    • Three-dimensional reconstructions of nucleolus-organizing regions in PHA-stimulated human lymphocytes
    • DOI 10.1016/0248-4900(89)90175-5
    • P Hozak JT Novak K Smetana 1989 Three-dimensional reconstructions of nucleolus-organizing regions in PHA-stimulated human lymphocytes Biol Cell 66 225 33 2605368 10.1016/0248-4900(89)90175-5 1:STN:280:DyaK3c7gsF2isQ%3D%3D (Pubitemid 19245709)
    • (1989) Biology of the Cell , vol.66 , Issue.3 , pp. 225-233
    • Hozak, P.1    Novak, J.T.2    Smetana, K.3
  • 15
    • 41149120500 scopus 로고    scopus 로고
    • Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
    • 18353998 10.1523/JNEUROSCI.3189-07.2008 1:CAS:528:DC%2BD1cXjvFCjs7k%3D
    • G Knott H Marchman D Wall B Lich 2008 Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling J Neurosci 28 2959 2964 18353998 10.1523/JNEUROSCI.3189-07.2008 1:CAS:528:DC%2BD1cXjvFCjs7k%3D
    • (2008) J Neurosci , vol.28 , pp. 2959-2964
    • Knott, G.1    Marchman, H.2    Wall, D.3    Lich, B.4
  • 16
    • 1942534139 scopus 로고    scopus 로고
    • Histone H1 and chromatin interactions in human fibroblast nuclei after H1 depletion and reconstitution with H1 subfractions
    • 15057966 10.1002/cyto.a.10119
    • NN Kostova L Srebreva DV Markov I Rundquist 2004 Histone H1 and chromatin interactions in human fibroblast nuclei after H1 depletion and reconstitution with H1 subfractions Cytometry A 58 132 139 15057966 10.1002/cyto.a.10119
    • (2004) Cytometry A , vol.58 , pp. 132-139
    • Kostova, N.N.1    Srebreva, L.2    Markov, D.V.3    Rundquist, I.4
  • 17
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
    • DOI 10.1038/nrg2041, PII NRG2041
    • C Lanctot T Cheutin M Cremer G Cavalli T Cremer 2007 Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions Nat Rev Genet 8 104 115 17230197 10.1038/nrg2041 1:CAS:528: DC%2BD2sXmt1OmtQ%3D%3D (Pubitemid 46122840)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.2 , pp. 104-115
    • Lanctot, C.1    Cheutin, T.2    Cremer, M.3    Cavalli, G.4    Cremer, T.5
  • 18
    • 0026519459 scopus 로고
    • Visualization of DNA within mitochondria by osmium-ammine staining of mouse duodenal crypt cells
    • 1382080
    • DF Liu M El-Alfy CP Leblond 1992 Visualization of DNA within mitochondria by osmium-ammine staining of mouse duodenal crypt cells J Cell Sci 101 Pt 4 785 793 1382080
    • (1992) J Cell Sci , vol.101 , Issue.PT 4 , pp. 785-793
    • Liu, D.F.1    El-Alfy, M.2    Leblond, C.P.3
  • 20
    • 33846535507 scopus 로고    scopus 로고
    • Cell biology: Chromosome territories
    • DOI 10.1038/445379a, PII 445379A
    • KJ Meaburn T Misteli 2007 Cell biology: chromosome territories Nature 445 379 381 17251970 10.1038/445379a 1:CAS:528:DC%2BD2sXos12nsA%3D%3D (Pubitemid 46160900)
    • (2007) Nature , vol.445 , Issue.7126 , pp. 379-781
    • Meaburn, K.J.1    Misteli, T.2
  • 21
    • 0027960102 scopus 로고
    • An alternative method for preparation of Schiff-like reagent from osmium-ammine complex for selective staining of DNA on thin Lowicryl sections
    • 7983365 1:CAS:528:DyaK2MXisFygtbo%3D
    • VT Mikhaylova DV Markov 1994 An alternative method for preparation of Schiff-like reagent from osmium-ammine complex for selective staining of DNA on thin Lowicryl sections J Histochem Cytochem 42 1643 1649 7983365 1:CAS:528:DyaK2MXisFygtbo%3D
    • (1994) J Histochem Cytochem , vol.42 , pp. 1643-1649
    • Mikhaylova, V.T.1    Markov, D.V.2
  • 22
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the Sequence: Cellular Organization of Genome Function
    • DOI 10.1016/j.cell.2007.01.028, PII S0092867407001262
    • T Misteli 2007 Beyond the sequence: cellular organization of genome function Cell 128 787 800 17320514 10.1016/j.cell.2007.01.028 1:CAS:528:DC%2BD2sXis12isrs%3D (Pubitemid 46273571)
    • (2007) Cell , vol.128 , Issue.4 , pp. 787-800
    • Misteli, T.1
  • 23
    • 0016776807 scopus 로고
    • Perichromatin fibrils as components of rapidly labeled extranucleolar RNA
    • 1239516 10.1016/S0022-5320(75)80040-2 1:CAS:528:DyaE28XlslSjsA%3D%3D
    • RE Nash E Puvion W Bernhard 1975 Perichromatin fibrils as components of rapidly labeled extranucleolar RNA J Ultrastruct Res 53 395 405 1239516 10.1016/S0022-5320(75)80040-2 1:CAS:528:DyaE28XlslSjsA%3D%3D
    • (1975) J Ultrastruct Res , vol.53 , pp. 395-405
    • Nash, R.E.1    Puvion, E.2    Bernhard, W.3
  • 25
    • 0042767995 scopus 로고    scopus 로고
    • The dynamics of chromosome organization and gene regulation
    • DOI 10.1146/annurev.biochem.72.121801.161724
    • DL Spector 2003 The dynamics of chromosome organization and gene regulation Annu Rev Biochem 72 573 608 14527325 10.1146/annurev.biochem.72. 121801.161724 1:CAS:528:DC%2BD3sXntFSgtb0%3D (Pubitemid 36930454)
    • (2003) Annual Review of Biochemistry , vol.72 , pp. 573-608
    • Spector, D.L.1
  • 26
    • 0002256053 scopus 로고
    • The intermediate optical system of laser-scanning confocal microscopes
    • J.B. Pawley (eds). Plenum Press New York
    • Stelzer EHK (1995) The intermediate optical system of laser-scanning confocal microscopes. In: Pawley JB (ed) Handbook of biological confocal microscopy. Plenum Press, New York, pp. 139-154
    • (1995) Handbook of Biological Confocal Microscopy
    • Stelzer, E.H.K.1
  • 27
    • 34250176526 scopus 로고    scopus 로고
    • Active genes at the nuclear pore complex
    • DOI 10.1016/j.ceb.2007.04.012, PII S0955067407000646, Nucleus and Gene Expression
    • A Taddei 2007 Active genes at the nuclear pore complex Curr Opin Cell Biol 19 305 310 17467257 10.1016/j.ceb.2007.04.012 1:CAS:528: DC%2BD2sXmsFKms7w%3D (Pubitemid 46899513)
    • (2007) Current Opinion in Cell Biology , vol.19 , Issue.3 , pp. 305-310
    • Taddei, A.1
  • 28
    • 10944252995 scopus 로고    scopus 로고
    • The function of nuclear architecture: A genetic approach
    • DOI 10.1146/annurev.genet.37.110801.142705
    • A Taddei F Hediger FR Neumann SM Gasser 2004 The function of nuclear architecture: a genetic approach Annu Rev Genet 38 305 345 15568979 10.1146/annurev.genet.37.110801.142705 1:CAS:528:DC%2BD2MXltlOqug%3D%3D (Pubitemid 40013731)
    • (2004) Annual Review of Genetics , vol.38 , pp. 305-345
    • Taddei, A.1    Hediger, F.2    Neumann, F.R.3    Gasser, S.M.4
  • 30
    • 0028852858 scopus 로고
    • 2-generating chemicals for em Feulgen-type staining of DNA
    • 7549012 1:CAS:528:DyaK2MXotlygsrw%3D
    • 2-generating chemicals for EM Feulgen-type staining of DNA Eur J Histochem 39 101 106 7549012 1:CAS:528:DyaK2MXotlygsrw%3D
    • (1995) Eur J Histochem , vol.39 , pp. 101-106
    • Vazquez-Nin, G.H.1    Biggiogera, M.2    Echeverria, O.M.3
  • 31
    • 0033895231 scopus 로고    scopus 로고
    • High resolution analysis of interphase chromosome domains
    • 10862716 1:CAS:528:DC%2BD3cXlslyktLw%3D
    • AE Visser F Jaunin S Fakan JA Aten 2000 High resolution analysis of interphase chromosome domains J Cell Sci 113 2585 2593 10862716 1:CAS:528:DC%2BD3cXlslyktLw%3D
    • (2000) J Cell Sci , vol.113 , pp. 2585-2593
    • Visser, A.E.1    Jaunin, F.2    Fakan, S.3    Aten, J.A.4
  • 32
    • 0028170703 scopus 로고
    • Retention of glycogen in cryosubstituted mouse liver
    • DOI 10.1007/BF00269577
    • ML Von Schack S Fakan 1994 Retention of glycogen in cryosubstituted mouse liver Histochem Cell Biol 102 451 455 10.1007/BF00269577 (Pubitemid 24372472)
    • (1994) Histochemistry , vol.102 , Issue.6 , pp. 451-455
    • Von Schack, M.L.1    Fakan, S.2
  • 33
    • 58449096443 scopus 로고    scopus 로고
    • Ultramicrotomy in the ESEM, a versatile method for materials and life sciences
    • 19196420 10.1111/j.1365-2818.2008.03104.x 1:STN:280: DC%2BD1M7itF2ntQ%3D%3D
    • A Zankel B Kraus P Poelt M Schaffer E Ingolic 2009 Ultramicrotomy in the ESEM, a versatile method for materials and life sciences J Microsc 233 140 148 19196420 10.1111/j.1365-2818.2008.03104.x 1:STN:280:DC%2BD1M7itF2ntQ%3D%3D
    • (2009) J Microsc , vol.233 , pp. 140-148
    • Zankel, A.1    Kraus, B.2    Poelt, P.3    Schaffer, M.4    Ingolic, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.