-
1
-
-
0242692671
-
Multiple sigma subunits and the partitioning of bacterial transcription space
-
Gruber TM, Gross CA. Multiple sigma subunits and the partitioning of bacterial transcription space. Annu Rev Microbiol 2003, 57:441-466.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 441-466
-
-
Gruber, T.M.1
Gross, C.A.2
-
3
-
-
71749093772
-
Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli
-
Hengge R. Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli. Res Microbiol 2009, 160(9):667-676.
-
(2009)
Res Microbiol
, vol.160
, Issue.9
, pp. 667-676
-
-
Hengge, R.1
-
4
-
-
24044489239
-
The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo
-
Zhao K, Liu M, Burgess RR. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. J Biol Chem 2005, 280(18):17758-17768.
-
(2005)
J Biol Chem
, vol.280
, Issue.18
, pp. 17758-17768
-
-
Zhao, K.1
Liu, M.2
Burgess, R.R.3
-
5
-
-
62649163835
-
Growth phase- and cell division-dependent activation and inactivation of the {sigma}32 regulon in Escherichia coli
-
Wagner MA, Zahrl D, Rieser G, Koraimann G. Growth phase- and cell division-dependent activation and inactivation of the {sigma}32 regulon in Escherichia coli. J Bacteriol 2009, 191(5):1695-1702.
-
(2009)
J Bacteriol
, vol.191
, Issue.5
, pp. 1695-1702
-
-
Wagner, M.A.1
Zahrl, D.2
Rieser, G.3
Koraimann, G.4
-
6
-
-
38849105328
-
The Bacillus and Myxococcus developmental networks and their transcriptional regulators
-
Kroos L. The Bacillus and Myxococcus developmental networks and their transcriptional regulators. Annu Rev Genet 2007, 41:13-39.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 13-39
-
-
Kroos, L.1
-
7
-
-
35848954992
-
SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria
-
Hecker M, Pané-Farré J, Völker U. SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria. Annu Rev Microbiol 2007, 61:215-236.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 215-236
-
-
Hecker, M.1
Pané-Farré, J.2
Völker, U.3
-
8
-
-
78650744686
-
Novel {sigma}B regulation modules of Gram-positive bacteria involve the use of complex hybrid histidine kinases
-
de Been M, Francke C, Siezen RJ, Abee T. Novel {sigma}B regulation modules of Gram-positive bacteria involve the use of complex hybrid histidine kinases. Microbiology 2011, 157:3-12.
-
(2011)
Microbiology
, vol.157
, pp. 3-12
-
-
de Been, M.1
Francke, C.2
Siezen, R.J.3
Abee, T.4
-
9
-
-
70350432754
-
The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family
-
Staroń A, Sofia HJ, Dietrich S, Ulrich LE, Liesegang H, Mascher T. The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family. Mol Microbiol 2009, 74(3):557-581.
-
(2009)
Mol Microbiol
, vol.74
, Issue.3
, pp. 557-581
-
-
Staroń, A.1
Sofia, H.J.2
Dietrich, S.3
Ulrich, L.E.4
Liesegang, H.5
Mascher, T.6
-
10
-
-
0033912262
-
The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor
-
Buck M, Gallegos MT, Studholme DJ, Guo Y, Gralla JD. The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor. J Bacteriol 2000, 182(15):4129-4136.
-
(2000)
J Bacteriol
, vol.182
, Issue.15
, pp. 4129-4136
-
-
Buck, M.1
Gallegos, M.T.2
Studholme, D.J.3
Guo, Y.4
Gralla, J.D.5
-
11
-
-
27144440933
-
Genome update: sigma factors in 240 bacterial genomes
-
Kill K, Binnewies TT, Sicheritz-Ponten T, Willenbrock H, Hallin PF, Wassenaar TM, Ussery DW. Genome update: sigma factors in 240 bacterial genomes. Microbiology 2005, 151(Pt 10):3147-3150.
-
(2005)
Microbiology
, vol.151
, Issue.PART 10
, pp. 3147-3150
-
-
Kill, K.1
Binnewies, T.T.2
Sicheritz-Ponten, T.3
Willenbrock, H.4
Hallin, P.F.5
Wassenaar, T.M.6
Ussery, D.W.7
-
12
-
-
0024449796
-
In vivo studies on the interaction of RNA polymerase-sigma 54 with the Klebsiella pneumoniae and Rhizobium meliloti nifH promoters. The role of NifA in the formation of an open promoter complex
-
Morett E, Buck M. In vivo studies on the interaction of RNA polymerase-sigma 54 with the Klebsiella pneumoniae and Rhizobium meliloti nifH promoters. The role of NifA in the formation of an open promoter complex. J Mol Biol 1989, 210(1):65-77.
-
(1989)
J Mol Biol
, vol.210
, Issue.1
, pp. 65-77
-
-
Morett, E.1
Buck, M.2
-
13
-
-
0026729012
-
Specific binding of the transcription factor sigma-54 to promoter DNA
-
Buck M, Cannon W. Specific binding of the transcription factor sigma-54 to promoter DNA. Nature 1992, 358(6385):422-424.
-
(1992)
Nature
, vol.358
, Issue.6385
, pp. 422-424
-
-
Buck, M.1
Cannon, W.2
-
14
-
-
0033570908
-
Compilation and analysis of sigma(54)-dependent promoter sequences
-
Barrios H, Valderrama B, Morett E. Compilation and analysis of sigma(54)-dependent promoter sequences. Nucleic Acids Res 1999, 27(22):4305-4313.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.22
, pp. 4305-4313
-
-
Barrios, H.1
Valderrama, B.2
Morett, E.3
-
15
-
-
0027340543
-
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains
-
Morett E, Segovia L. The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J Bacteriol 1993, 175(19):6067-6074.
-
(1993)
J Bacteriol
, vol.175
, Issue.19
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
16
-
-
0034192966
-
The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences
-
Studholme DJ, Buck M. The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences. FEMS Microbiol Lett 2000, 186(1):1-9.
-
(2000)
FEMS Microbiol Lett
, vol.186
, Issue.1
, pp. 1-9
-
-
Studholme, D.J.1
Buck, M.2
-
17
-
-
41749093397
-
Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor
-
Wigneshweraraj S, Bose D, Burrows PC, Joly N, Schumacher J, Rappas M, Pape T, Zhang X, Stockley P, Severinov K, et al. Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor. Mol Microbiol 2008, 68(3):538-546.
-
(2008)
Mol Microbiol
, vol.68
, Issue.3
, pp. 538-546
-
-
Wigneshweraraj, S.1
Bose, D.2
Burrows, P.C.3
Joly, N.4
Schumacher, J.5
Rappas, M.6
Pape, T.7
Zhang, X.8
Stockley, P.9
Severinov, K.10
-
18
-
-
79953328955
-
Signal sensory systems that impact sigma 54-dependent transcription
-
Shingler V. Signal sensory systems that impact sigma 54-dependent transcription. FEMS Microbiol Rev 2011, 35(3):425-440.
-
(2011)
FEMS Microbiol Rev
, vol.35
, Issue.3
, pp. 425-440
-
-
Shingler, V.1
-
19
-
-
0026070143
-
The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription
-
Weiss DS, Batut J, Klose KE, Keener J, Kustu S. The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription. Cell 1991, 67(1):155-167.
-
(1991)
Cell
, vol.67
, Issue.1
, pp. 155-167
-
-
Weiss, D.S.1
Batut, J.2
Klose, K.E.3
Keener, J.4
Kustu, S.5
-
20
-
-
56949091704
-
Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation
-
Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE. Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation. J Mol Biol 2008, 384(5):1058-1075.
-
(2008)
J Mol Biol
, vol.384
, Issue.5
, pp. 1058-1075
-
-
Batchelor, J.D.1
Doucleff, M.2
Lee, C.J.3
Matsubara, K.4
De Carlo, S.5
Heideker, J.6
Lamers, M.H.7
Pelton, J.G.8
Wemmer, D.E.9
-
21
-
-
70349787160
-
Receiver domains control the active-state stoichiometry of Aquifex aeolicus sigma54 activator NtrC4, as revealed by electrospray ionization mass spectrometry
-
Batchelor JD, Sterling HJ, Hong E, Williams ER, Wemmer DE. Receiver domains control the active-state stoichiometry of Aquifex aeolicus sigma54 activator NtrC4, as revealed by electrospray ionization mass spectrometry. J Mol Biol 2009, 393(3):634-643.
-
(2009)
J Mol Biol
, vol.393
, Issue.3
, pp. 634-643
-
-
Batchelor, J.D.1
Sterling, H.J.2
Hong, E.3
Williams, E.R.4
Wemmer, D.E.5
-
22
-
-
0033759269
-
Identification and mapping of sigma-54 promoters in Chlamydia trachomatis
-
Mathews SA, Timms P. Identification and mapping of sigma-54 promoters in Chlamydia trachomatis. J Bacteriol 2000, 182(21):6239-6242.
-
(2000)
J Bacteriol
, vol.182
, Issue.21
, pp. 6239-6242
-
-
Mathews, S.A.1
Timms, P.2
-
23
-
-
77749296042
-
Sigma54-Mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism
-
Stevens MJ, Molenaar D, de Jong A, De Vos WM, Kleerebezem M. sigma54-Mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism. Microbiology 2010, 156(Pt 3):695-707.
-
(2010)
Microbiology
, vol.156
, Issue.PART 3
, pp. 695-707
-
-
Stevens, M.J.1
Molenaar, D.2
de Jong, A.3
De Vos, W.M.4
Kleerebezem, M.5
-
24
-
-
33646013878
-
Sigma L is important for cold shock adaptation of Bacillus subtilis
-
Wiegeshoff F, Beckering CL, Debarbouille M, Marahiel MA. Sigma L is important for cold shock adaptation of Bacillus subtilis. J Bacteriol 2006, 188(8):3130-3133.
-
(2006)
J Bacteriol
, vol.188
, Issue.8
, pp. 3130-3133
-
-
Wiegeshoff, F.1
Beckering, C.L.2
Debarbouille, M.3
Marahiel, M.A.4
-
25
-
-
0034822014
-
Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli
-
Reitzer L, Schneider BL. Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli. Microbiol Mol Biol Rev 2001, 65(3):422-444.
-
(2001)
Microbiol Mol Biol Rev
, vol.65
, Issue.3
, pp. 422-444
-
-
Reitzer, L.1
Schneider, B.L.2
-
26
-
-
3042565578
-
Sigma54 enhancer binding proteins and Myxococcus xanthus fruiting body development
-
Jakobsen JS, Jelsbak L, Welch RD, Cummings C, Goldman B, Stark E, Slater S, Kaiser D. Sigma54 enhancer binding proteins and Myxococcus xanthus fruiting body development. J Bacteriol 2004, 186(13):4361-4368.
-
(2004)
J Bacteriol
, vol.186
, Issue.13
, pp. 4361-4368
-
-
Jakobsen, J.S.1
Jelsbak, L.2
Welch, R.D.3
Cummings, C.4
Goldman, B.5
Stark, E.6
Slater, S.7
Kaiser, D.8
-
28
-
-
13444278570
-
Escherichia coli dihydroxyacetone kinase controls gene expression by binding to transcription factor DhaR
-
Bächler C, Schneider P, Bähler P, Lustig A, Erni B. Escherichia coli dihydroxyacetone kinase controls gene expression by binding to transcription factor DhaR. EMBO J 2005, 24(2):283-293.
-
(2005)
EMBO J
, vol.24
, Issue.2
, pp. 283-293
-
-
Bächler, C.1
Schneider, P.2
Bähler, P.3
Lustig, A.4
Erni, B.5
-
29
-
-
0032525980
-
A bacterial ATP-dependent, enhancer binding protein that activates the housekeeping RNA polymerase
-
Bowman WC, Kranz RG. A bacterial ATP-dependent, enhancer binding protein that activates the housekeeping RNA polymerase. Genes Dev 1998, 12(12):1884-1893.
-
(1998)
Genes Dev
, vol.12
, Issue.12
, pp. 1884-1893
-
-
Bowman, W.C.1
Kranz, R.G.2
-
30
-
-
57749182194
-
The HupR receiver domain crystal structure in its nonphospho and inhibitory phospho states
-
Davies KM, Lowe ED, Venien-Bryan C, Johnson LN. The HupR receiver domain crystal structure in its nonphospho and inhibitory phospho states. J Mol Biol 2009, 385(1):51-64.
-
(2009)
J Mol Biol
, vol.385
, Issue.1
, pp. 51-64
-
-
Davies, K.M.1
Lowe, E.D.2
Venien-Bryan, C.3
Johnson, L.N.4
-
31
-
-
0017348070
-
The product of a newly identified gene, gInF, is required for synthesis of glutamine synthetase in Salmonella
-
Garcia E, Bancroft S, Rhee SG, Kustu S. The product of a newly identified gene, gInF, is required for synthesis of glutamine synthetase in Salmonella. Proc Natl Acad Sci USA 1977, 74(4):1662-1666.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, Issue.4
, pp. 1662-1666
-
-
Garcia, E.1
Bancroft, S.2
Rhee, S.G.3
Kustu, S.4
-
32
-
-
0011064770
-
Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor
-
Hirschman J, Wong PK, Sei K, Keener J, Kustu S. Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor. Proc Natl Acad Sci USA 1985, 82(22):7525-7529.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, Issue.22
, pp. 7525-7529
-
-
Hirschman, J.1
Wong, P.K.2
Sei, K.3
Keener, J.4
Kustu, S.5
-
33
-
-
0024728119
-
Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism
-
Kustu S, Santero E, Keener J, Popham D, Weiss D. Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol Rev 1989, 53(3):367-376.
-
(1989)
Microbiol Rev
, vol.53
, Issue.3
, pp. 367-376
-
-
Kustu, S.1
Santero, E.2
Keener, J.3
Popham, D.4
Weiss, D.5
-
34
-
-
77950344767
-
Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis
-
Zhao K, Liu M, Burgess RR. Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis. Nucleic Acids Res 2010, 38(4):1273-1283.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.4
, pp. 1273-1283
-
-
Zhao, K.1
Liu, M.2
Burgess, R.R.3
-
35
-
-
68849107920
-
Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens
-
Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B, et al. Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens. BMC Genomics 2009, 10:331.
-
(2009)
BMC Genomics
, vol.10
, pp. 331
-
-
Leang, C.1
Krushkal, J.2
Ueki, T.3
Puljic, M.4
Sun, J.5
Juárez, K.6
Núñez, C.7
Reguera, G.8
DiDonato, R.9
Postier, B.10
-
36
-
-
2942595891
-
Global analysis of gene expression in an rpoN mutant of Listeria monocytogenes
-
Arous S, Buchrieser C, Folio P, Glaser P, Namane A, Hébraud M, Héchard Y. Global analysis of gene expression in an rpoN mutant of Listeria monocytogenes. Microbiology 2004, 150(Pt 5):1581-1590.
-
(2004)
Microbiology
, vol.150
, Issue.PART 5
, pp. 1581-1590
-
-
Arous, S.1
Buchrieser, C.2
Folio, P.3
Glaser, P.4
Namane, A.5
Hébraud, M.6
Héchard, Y.7
-
37
-
-
33845626641
-
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria
-
Deutscher J, Francke C, Postma PW. How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol Rev 2006, 70(4):939-1031.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, Issue.4
, pp. 939-1031
-
-
Deutscher, J.1
Francke, C.2
Postma, P.W.3
-
38
-
-
77952552068
-
Regulatory roles of the bacterial nitrogen-related phosphotransferase system
-
Pflüger-Grau K, Görke B. Regulatory roles of the bacterial nitrogen-related phosphotransferase system. Trends Microbiol 2010, 18(5):205-214.
-
(2010)
Trends Microbiol
, vol.18
, Issue.5
, pp. 205-214
-
-
Pflüger-Grau, K.1
Görke, B.2
-
39
-
-
70849085746
-
Identification and analysis of the osmotolerance associated genes in Listeria monocytogenes
-
Okada Y, Makino S, Okada N, Asakura H, Yamamoto S, Igimi S. Identification and analysis of the osmotolerance associated genes in Listeria monocytogenes. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2008, 25(9):1089-1094.
-
(2008)
Food Addit Contam Part A Chem Anal Control Expo Risk Assess
, vol.25
, Issue.9
, pp. 1089-1094
-
-
Okada, Y.1
Makino, S.2
Okada, N.3
Asakura, H.4
Yamamoto, S.5
Igimi, S.6
-
40
-
-
73849114178
-
Structure and regulation of the gab gene cluster, involved in the gamma-aminobutyric acid shunt, are controlled by a sigma54 factor in Bacillus thuringiensis
-
Zhu L, Peng Q, Song F, Jiang Y, Sun C, Zhang J, Huang D. Structure and regulation of the gab gene cluster, involved in the gamma-aminobutyric acid shunt, are controlled by a sigma54 factor in Bacillus thuringiensis. J Bacteriol 2010, 192(1):346-355.
-
(2010)
J Bacteriol
, vol.192
, Issue.1
, pp. 346-355
-
-
Zhu, L.1
Peng, Q.2
Song, F.3
Jiang, Y.4
Sun, C.5
Zhang, J.6
Huang, D.7
-
41
-
-
0034924435
-
Ralstonia metallidurans CH34 RpoN sigma factor and the control of nitrogen metabolism and biphenyl utilization
-
Mouz S, Coursange E, Toussaint A. Ralstonia metallidurans CH34 RpoN sigma factor and the control of nitrogen metabolism and biphenyl utilization. Microbiology 2001, 147(Pt 7):1947-1954.
-
(2001)
Microbiology
, vol.147
, Issue.PART 7
, pp. 1947-1954
-
-
Mouz, S.1
Coursange, E.2
Toussaint, A.3
-
42
-
-
13444302680
-
Promoters in the environment: transcriptional regulation in its natural context
-
Cases I, de Lorenzo V. Promoters in the environment: transcriptional regulation in its natural context. Nat Rev Microbiol 2005, 3(2):105-118.
-
(2005)
Nat Rev Microbiol
, vol.3
, Issue.2
, pp. 105-118
-
-
Cases, I.1
de Lorenzo, V.2
-
43
-
-
79959317824
-
Choline catabolism, sigma(54) factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene
-
Massimelli MJ, Sanchez DG, Buchieri MV, Olvera L, Beassoni PR, Schweizer HP, Morett E, Lisa AT. Choline catabolism, sigma(54) factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene. Microbiol Res 2011, 166(5):380-390.
-
(2011)
Microbiol Res
, vol.166
, Issue.5
, pp. 380-390
-
-
Massimelli, M.J.1
Sanchez, D.G.2
Buchieri, M.V.3
Olvera, L.4
Beassoni, P.R.5
Schweizer, H.P.6
Morett, E.7
Lisa, A.T.8
-
44
-
-
79551611518
-
Regulation of the co-evolved HrpR and HrpS AAA+ proteins required for Pseudomonas syringae pathogenicity
-
Jovanovic M, James EH, Burrows PC, Rego FG, Buck M, Schumacher J. Regulation of the co-evolved HrpR and HrpS AAA+ proteins required for Pseudomonas syringae pathogenicity. Nat Commun 2011, 2:177.
-
(2011)
Nat Commun
, vol.2
, pp. 177
-
-
Jovanovic, M.1
James, E.H.2
Burrows, P.C.3
Rego, F.G.4
Buck, M.5
Schumacher, J.6
-
45
-
-
79955528849
-
Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins
-
Bernard CS, Brunet YR, Gavioli M, Lloubes R, Cascales E. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol 2011, 193(9):2158-2167.
-
(2011)
J Bacteriol
, vol.193
, Issue.9
, pp. 2158-2167
-
-
Bernard, C.S.1
Brunet, Y.R.2
Gavioli, M.3
Lloubes, R.4
Cascales, E.5
-
46
-
-
33947427165
-
Evidence that RpoS (sigmaS) in Borrelia burgdorferi is controlled directly by RpoN (sigma54/sigmaN)
-
Smith AH, Blevins JS, Bachlani GN, Yang XF, Norgard MV. Evidence that RpoS (sigmaS) in Borrelia burgdorferi is controlled directly by RpoN (sigma54/sigmaN). J Bacteriol 2007, 189(5):2139-2144.
-
(2007)
J Bacteriol
, vol.189
, Issue.5
, pp. 2139-2144
-
-
Smith, A.H.1
Blevins, J.S.2
Bachlani, G.N.3
Yang, X.F.4
Norgard, M.V.5
-
47
-
-
17044399341
-
Borrelia burgdorferi sigma54 is required for mammalian infection and vector transmission but not for tick colonization
-
Fisher MA, Grimm D, Henion AK, Elias AF, Stewart PE, Rosa PA, Gherardini FC. Borrelia burgdorferi sigma54 is required for mammalian infection and vector transmission but not for tick colonization. Proc Natl Acad Sci USA 2005, 102(14):5162-5167.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.14
, pp. 5162-5167
-
-
Fisher, M.A.1
Grimm, D.2
Henion, A.K.3
Elias, A.F.4
Stewart, P.E.5
Rosa, P.A.6
Gherardini, F.C.7
-
48
-
-
77749268284
-
Inactivation of alternative sigma factor 54 (RpoN) leads to increased acid resistance, and alters locus of enterocyte effacement (LEE) expression in Escherichia coli O157: H7
-
Riordan JT, Tietjen JA, Walsh CW, Gustafson JE, Whittam TS. Inactivation of alternative sigma factor 54 (RpoN) leads to increased acid resistance, and alters locus of enterocyte effacement (LEE) expression in Escherichia coli O157: H7. Microbiology 2010, 156(Pt 3):719-730.
-
(2010)
Microbiology
, vol.156
, Issue.PART 3
, pp. 719-730
-
-
Riordan, J.T.1
Tietjen, J.A.2
Walsh, C.W.3
Gustafson, J.E.4
Whittam, T.S.5
-
49
-
-
40749094473
-
Burkholderia cenocepacia requires the RpoN sigma factor for biofilm formation and intracellular trafficking within macrophages
-
Saldías MS, Lamothe J, Wu R, Valvano MA. Burkholderia cenocepacia requires the RpoN sigma factor for biofilm formation and intracellular trafficking within macrophages. Infect Immun 2008, 76(3):1059-1067.
-
(2008)
Infect Immun
, vol.76
, Issue.3
, pp. 1059-1067
-
-
Saldías, M.S.1
Lamothe, J.2
Wu, R.3
Valvano, M.A.4
-
50
-
-
3042550985
-
Vibrio fischeri sigma54 controls motility, biofilm formation, luminescence, and colonization
-
Wolfe AJ, Millikan DS, Campbell JM, Visick KL. Vibrio fischeri sigma54 controls motility, biofilm formation, luminescence, and colonization. Appl Environ Microbiol 2004, 70(4):2520-2524.
-
(2004)
Appl Environ Microbiol
, vol.70
, Issue.4
, pp. 2520-2524
-
-
Wolfe, A.J.1
Millikan, D.S.2
Campbell, J.M.3
Visick, K.L.4
-
51
-
-
70449572130
-
An intricate network of regulators controls biofilm formation and colonization by Vibrio fischeri
-
Visick KL. An intricate network of regulators controls biofilm formation and colonization by Vibrio fischeri. Mol Microbiol 2009, 74(4):782-789.
-
(2009)
Mol Microbiol
, vol.74
, Issue.4
, pp. 782-789
-
-
Visick, K.L.1
-
52
-
-
0037332383
-
Domain architectures of sigma54-dependent transcriptional activators
-
Studholme DJ, Dixon R. Domain architectures of sigma54-dependent transcriptional activators. J Bacteriol 2003, 185(6):1757-1767.
-
(2003)
J Bacteriol
, vol.185
, Issue.6
, pp. 1757-1767
-
-
Studholme, D.J.1
Dixon, R.2
-
53
-
-
0347567138
-
The sigma54 regulon (sigmulon) of Pseudomonas putida
-
Cases I, Ussery DW, de Lorenzo V. The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol 2003, 5(12):1281-1293.
-
(2003)
Environ Microbiol
, vol.5
, Issue.12
, pp. 1281-1293
-
-
Cases, I.1
Ussery, D.W.2
de Lorenzo, V.3
-
54
-
-
0033832615
-
Predicting protein function by genomic context: quantitative evaluation and qualitative inferences
-
Huynen M, Snel B, Lathe W, Bork P. Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res 2000, 10(8):1204-1210.
-
(2000)
Genome Res
, vol.10
, Issue.8
, pp. 1204-1210
-
-
Huynen, M.1
Snel, B.2
Lathe, W.3
Bork, P.4
-
55
-
-
14844314856
-
Variation and evolution of biomolecular systems: searching for functional relevance
-
Huynen MA, Gabaldón T, Snel B. Variation and evolution of biomolecular systems: searching for functional relevance. FEBS Lett 2005, 579(8):1839-1845.
-
(2005)
FEBS Lett
, vol.579
, Issue.8
, pp. 1839-1845
-
-
Huynen, M.A.1
Gabaldón, T.2
Snel, B.3
-
56
-
-
34548219522
-
Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
-
Rodionov DA. Comparative genomic reconstruction of transcriptional regulatory networks in bacteria. Chem Rev 2007, 107(8):3467-3497.
-
(2007)
Chem Rev
, vol.107
, Issue.8
, pp. 3467-3497
-
-
Rodionov, D.A.1
-
57
-
-
16244417206
-
Unity in organisation and regulation of catabolic operons in Lactobacillus plantarum, Lactococcus lactis and Listeria monocytogenes
-
Andersson U, Molenaar D, Rådstrom P, de Vos WM. Unity in organisation and regulation of catabolic operons in Lactobacillus plantarum, Lactococcus lactis and Listeria monocytogenes. Syst Appl Microbiol 2005, 28(3):187-195.
-
(2005)
Syst Appl Microbiol
, vol.28
, Issue.3
, pp. 187-195
-
-
Andersson, U.1
Molenaar, D.2
Rådstrom, P.3
de Vos, W.M.4
-
58
-
-
42449147860
-
A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1
-
Francke C, Kerkhoven R, Wels M, Siezen RJ. A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1. BMC Genomics 2008, 9:145.
-
(2008)
BMC Genomics
, vol.9
, pp. 145
-
-
Francke, C.1
Kerkhoven, R.2
Wels, M.3
Siezen, R.J.4
-
59
-
-
67651205583
-
Bacterial PEP-dependent carbohydrate: phosphotransferase systems couple sensing and global control mechanisms
-
Lengeler JW, Jahreis K. Bacterial PEP-dependent carbohydrate: phosphotransferase systems couple sensing and global control mechanisms. Contrib Microbiol 2009, 16:65-87.
-
(2009)
Contrib Microbiol
, vol.16
, pp. 65-87
-
-
Lengeler, J.W.1
Jahreis, K.2
-
60
-
-
75549086416
-
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
-
Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2010, (38 Database):D346-354.
-
(2010)
Nucleic Acids Res
, Issue.38 DATABASE
-
-
Liolios, K.1
Chen, I.M.2
Mavromatis, K.3
Tavernarakis, N.4
Hugenholtz, P.5
Markowitz, V.M.6
Kyrpides, N.C.7
-
61
-
-
0026592145
-
The helix-turn-helix motif of sigma 54 is involved in recognition of the -13 promoter region
-
Merrick M, Chambers S. The helix-turn-helix motif of sigma 54 is involved in recognition of the -13 promoter region. J Bacteriol 1992, 174(22):7221-7226.
-
(1992)
J Bacteriol
, vol.174
, Issue.22
, pp. 7221-7226
-
-
Merrick, M.1
Chambers, S.2
-
62
-
-
0032536405
-
The pathogenic neisseriae contain an inactive rpoN gene and do not utilize the pilE sigma54 promoter
-
Laskos L, Dillard JP, Seifert HS, Fyfe JA, Davies JK. The pathogenic neisseriae contain an inactive rpoN gene and do not utilize the pilE sigma54 promoter. Gene 1998, 208(1):95-102.
-
(1998)
Gene
, vol.208
, Issue.1
, pp. 95-102
-
-
Laskos, L.1
Dillard, J.P.2
Seifert, H.S.3
Fyfe, J.A.4
Davies, J.K.5
-
63
-
-
0031880993
-
What are archaebacteria: life's third domain or monoderm prokaryotes related to gram-positive bacteria? A new proposal for the classification of prokaryotic organisms
-
Gupta RS. What are archaebacteria: life's third domain or monoderm prokaryotes related to gram-positive bacteria? A new proposal for the classification of prokaryotic organisms. Mol Microbiol 1998, 29(3):695-707.
-
(1998)
Mol Microbiol
, vol.29
, Issue.3
, pp. 695-707
-
-
Gupta, R.S.1
-
64
-
-
77956988767
-
A phylum level perspective on bacterial cell envelope architecture
-
Sutcliffe IC. A phylum level perspective on bacterial cell envelope architecture. Trends Microbiol 2010, 18(10):464-470.
-
(2010)
Trends Microbiol
, vol.18
, Issue.10
, pp. 464-470
-
-
Sutcliffe, I.C.1
-
65
-
-
65549085150
-
The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum
-
Geissinger O, Herlemann DP, Mörschel E, Maier UG, Brune A. The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum. Appl Environ Microbiol 2009, 75(9):2831-2840.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.9
, pp. 2831-2840
-
-
Geissinger, O.1
Herlemann, D.P.2
Mörschel, E.3
Maier, U.G.4
Brune, A.5
-
66
-
-
0026098823
-
Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN)
-
Kullik I, Fritsche S, Knobel H, Sanjuan J, Hennecke H, Fischer HM. Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN). J Bacteriol 1991, 173(3):1125-1138.
-
(1991)
J Bacteriol
, vol.173
, Issue.3
, pp. 1125-1138
-
-
Kullik, I.1
Fritsche, S.2
Knobel, H.3
Sanjuan, J.4
Hennecke, H.5
Fischer, H.M.6
-
67
-
-
0032448378
-
Differential regulation of Rhizobium etli rpoN2 gene expression during symbiosis and free-living growth
-
Michiels J, Moris M, Dombrecht B, Verreth C, Vanderleyden J. Differential regulation of Rhizobium etli rpoN2 gene expression during symbiosis and free-living growth. J Bacteriol 1998, 180(14):3620-3628.
-
(1998)
J Bacteriol
, vol.180
, Issue.14
, pp. 3620-3628
-
-
Michiels, J.1
Moris, M.2
Dombrecht, B.3
Verreth, C.4
Vanderleyden, J.5
-
68
-
-
64049091319
-
Flagellar biogenesis of Xanthomonas campestris requires the alternative sigma factors RpoN2 and FliA and is temporally regulated by FlhA, FlhB, and FlgM
-
Yang TC, Leu YW, Chang-Chien HC, Hu RM. Flagellar biogenesis of Xanthomonas campestris requires the alternative sigma factors RpoN2 and FliA and is temporally regulated by FlhA, FlhB, and FlgM. J Bacteriol 2009, 191(7):2266-2275.
-
(2009)
J Bacteriol
, vol.191
, Issue.7
, pp. 2266-2275
-
-
Yang, T.C.1
Leu, Y.W.2
Chang-Chien, H.C.3
Hu, R.M.4
-
69
-
-
0036032214
-
The four different sigma(54) factors of Rhodobacter sphaeroides are not functionally interchangeable
-
Poggio S, Osorio A, Dreyfus G, Camarena L. The four different sigma(54) factors of Rhodobacter sphaeroides are not functionally interchangeable. Mol Microbiol 2002, 46(1):75-85.
-
(2002)
Mol Microbiol
, vol.46
, Issue.1
, pp. 75-85
-
-
Poggio, S.1
Osorio, A.2
Dreyfus, G.3
Camarena, L.4
-
70
-
-
33748748618
-
Transcriptional specificity of RpoN1 and RpoN2 involves differential recognition of the promoter sequences and specific interaction with the cognate activator proteins
-
Poggio S, Osorio A, Dreyfus G, Camarena L. Transcriptional specificity of RpoN1 and RpoN2 involves differential recognition of the promoter sequences and specific interaction with the cognate activator proteins. J Biol Chem 2006, 281(37):27205-27215.
-
(2006)
J Biol Chem
, vol.281
, Issue.37
, pp. 27205-27215
-
-
Poggio, S.1
Osorio, A.2
Dreyfus, G.3
Camarena, L.4
-
71
-
-
60549113332
-
Deciphering bacterial flagellar gene regulatory networks in the genomic era
-
Smith TG, Hoover TR. Deciphering bacterial flagellar gene regulatory networks in the genomic era. Adv Appl Microbiol 2009, 67:257-295.
-
(2009)
Adv Appl Microbiol
, vol.67
, pp. 257-295
-
-
Smith, T.G.1
Hoover, T.R.2
-
72
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald AF, Aravind L, Spouge JL, Koonin EV. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999, 9(1):27-43.
-
(1999)
Genome Res
, vol.9
, Issue.1
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
73
-
-
33745041480
-
Evolutionary relationships and structural mechanisms of AAA+ proteins
-
Erzberger JP, Berger JM. Evolutionary relationships and structural mechanisms of AAA+ proteins. Annu Rev Biophys Biomol Struct 2006, 35:93-114.
-
(2006)
Annu Rev Biophys Biomol Struct
, vol.35
, pp. 93-114
-
-
Erzberger, J.P.1
Berger, J.M.2
-
74
-
-
20144366027
-
Structural insights into the activity of enhancer-binding proteins
-
Rappas M, Schumacher J, Beuron F, Niwa H, Bordes P, Wigneshweraraj S, Keetch CA, Robinson CV, Buck M, Zhang X. Structural insights into the activity of enhancer-binding proteins. Science 2005, 307(5717):1972-1975.
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1972-1975
-
-
Rappas, M.1
Schumacher, J.2
Beuron, F.3
Niwa, H.4
Bordes, P.5
Wigneshweraraj, S.6
Keetch, C.A.7
Robinson, C.V.8
Buck, M.9
Zhang, X.10
-
75
-
-
0031923677
-
In vivo studies on the positive control function of NifA: a conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation
-
González V, Olvera L, Soberón X, Morett E. In vivo studies on the positive control function of NifA: a conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation. Mol Microbiol 1998, 28(1):55-67.
-
(1998)
Mol Microbiol
, vol.28
, Issue.1
, pp. 55-67
-
-
González, V.1
Olvera, L.2
Soberón, X.3
Morett, E.4
-
76
-
-
70350642059
-
The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins
-
Zhang N, Joly N, Burrows PC, Jovanovic M, Wigneshweraraj SR, Buck M. The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins. Nucleic Acids Res 2009, 37(18):5981-5992.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.18
, pp. 5981-5992
-
-
Zhang, N.1
Joly, N.2
Burrows, P.C.3
Jovanovic, M.4
Wigneshweraraj, S.R.5
Buck, M.6
-
77
-
-
66149128846
-
Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae
-
Mueller RS, Beyhan S, Saini SG, Yildiz FH, Bartlett DH. Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae. J Bacteriol 2009, 191(11):3504-3516.
-
(2009)
J Bacteriol
, vol.191
, Issue.11
, pp. 3504-3516
-
-
Mueller, R.S.1
Beyhan, S.2
Saini, S.G.3
Yildiz, F.H.4
Bartlett, D.H.5
-
78
-
-
0029808625
-
PhhR, a divergently transcribed activator of the phenylalanine hydroxylase gene cluster of Pseudomonas aeruginosa
-
Song J, Jensen RA. PhhR, a divergently transcribed activator of the phenylalanine hydroxylase gene cluster of Pseudomonas aeruginosa. Mol Microbiol 1996, 22(3):497-507.
-
(1996)
Mol Microbiol
, vol.22
, Issue.3
, pp. 497-507
-
-
Song, J.1
Jensen, R.A.2
-
79
-
-
36249010913
-
Look, no hands! Unconventional transcriptional activators in bacteria
-
Beck LL, Smith TG, Hoover TR. Look, no hands! Unconventional transcriptional activators in bacteria. Trends Microbiol 2007, 15(12):530-537.
-
(2007)
Trends Microbiol
, vol.15
, Issue.12
, pp. 530-537
-
-
Beck, L.L.1
Smith, T.G.2
Hoover, T.R.3
-
80
-
-
77955127606
-
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology
-
Joly N, Engl C, Jovanovic G, Huvet M, Toni T, Sheng X, Stumpf MP, Buck M. Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology. FEMS Microbiol Rev 2010, 34(5):797-827.
-
(2010)
FEMS Microbiol Rev
, vol.34
, Issue.5
, pp. 797-827
-
-
Joly, N.1
Engl, C.2
Jovanovic, G.3
Huvet, M.4
Toni, T.5
Sheng, X.6
Stumpf, M.P.7
Buck, M.8
-
81
-
-
0034035586
-
Two-component and phosphorelay signal transduction
-
Hoch JA. Two-component and phosphorelay signal transduction. Curr Opin Microbiol 2000, 3(2):165-170.
-
(2000)
Curr Opin Microbiol
, vol.3
, Issue.2
, pp. 165-170
-
-
Hoch, J.A.1
-
82
-
-
77949918665
-
Sensor domains of two-component regulatory systems
-
Cheung J, Hendrickson WA. Sensor domains of two-component regulatory systems. Curr Opin Microbiol 2010, 13(2):116-123.
-
(2010)
Curr Opin Microbiol
, vol.13
, Issue.2
, pp. 116-123
-
-
Cheung, J.1
Hendrickson, W.A.2
-
83
-
-
0035853296
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains
-
Anantharaman V, Koonin EV, Aravind L. Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. J Mol Biol 2001, 307(5):1271-1292.
-
(2001)
J Mol Biol
, vol.307
, Issue.5
, pp. 1271-1292
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
84
-
-
2642554922
-
Bacterial signal transduction network in a genomic perspective
-
Galperin MY. Bacterial signal transduction network in a genomic perspective. Environ Microbiol 2004, 6(6):552-567.
-
(2004)
Environ Microbiol
, vol.6
, Issue.6
, pp. 552-567
-
-
Galperin, M.Y.1
-
85
-
-
75749103345
-
Extracytoplasmic PAS-like domains are common in signal transduction proteins
-
Chang C, Tesar C, Gu M, Babnigg G, Joachimiak A, Pokkuluri PR, Szurmant H, Schiffer M. Extracytoplasmic PAS-like domains are common in signal transduction proteins. J Bacteriol 2010, 192(4):1156-1159.
-
(2010)
J Bacteriol
, vol.192
, Issue.4
, pp. 1156-1159
-
-
Chang, C.1
Tesar, C.2
Gu, M.3
Babnigg, G.4
Joachimiak, A.5
Pokkuluri, P.R.6
Szurmant, H.7
Schiffer, M.8
-
86
-
-
1642554150
-
GAF domains: two-billion-year-old molecular switches that bind cyclic nucleotides
-
Martinez SE, Beavo JA, Hol WG. GAF domains: two-billion-year-old molecular switches that bind cyclic nucleotides. Mol Interv 2002, 2(5):317-323.
-
(2002)
Mol Interv
, vol.2
, Issue.5
, pp. 317-323
-
-
Martinez, S.E.1
Beavo, J.A.2
Hol, W.G.3
-
87
-
-
0032927643
-
A hybrid response regulator possessing a PEP-dependent phosphorylation domain
-
Reizer J, Schneider B, Reizer A, Saier MH. A hybrid response regulator possessing a PEP-dependent phosphorylation domain. Microbiology 1999, 145(Pt 5):987-989.
-
(1999)
Microbiology
, vol.145
, Issue.PART 5
, pp. 987-989
-
-
Reizer, J.1
Schneider, B.2
Reizer, A.3
Saier, M.H.4
-
88
-
-
63749115101
-
Bacterial nucleotide-based second messengers
-
Pesavento C, Hengge R. Bacterial nucleotide-based second messengers. Curr Opin Microbiol 2009, 12(2):170-176.
-
(2009)
Curr Opin Microbiol
, vol.12
, Issue.2
, pp. 170-176
-
-
Pesavento, C.1
Hengge, R.2
-
89
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer T, Jenal U. Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol 2009, 7(10):724-735.
-
(2009)
Nat Rev Microbiol
, vol.7
, Issue.10
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
90
-
-
77957938539
-
Lack of CbrB in Pseudomonas putida affects not only amino acids metabolism but also different stress responses and biofilm development
-
Amador CI, Canosa I, Govantes F, Santero E. Lack of CbrB in Pseudomonas putida affects not only amino acids metabolism but also different stress responses and biofilm development. Environ Microbiol 2010, 12(6):1748-1761.
-
(2010)
Environ Microbiol
, vol.12
, Issue.6
, pp. 1748-1761
-
-
Amador, C.I.1
Canosa, I.2
Govantes, F.3
Santero, E.4
-
91
-
-
0026513771
-
Pseudomonas aeruginosa AlgB, which modulates the expression of alginate, is a member of the NtrC subclass of prokaryotic regulators
-
Goldberg JB, Dahnke T. Pseudomonas aeruginosa AlgB, which modulates the expression of alginate, is a member of the NtrC subclass of prokaryotic regulators. Mol Microbiol 1992, 6(1):59-66.
-
(1992)
Mol Microbiol
, vol.6
, Issue.1
, pp. 59-66
-
-
Goldberg, J.B.1
Dahnke, T.2
-
92
-
-
0027770723
-
In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N)
-
Merrick MJ. In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N). Mol Microbiol 1993, 10(5):903-909.
-
(1993)
Mol Microbiol
, vol.10
, Issue.5
, pp. 903-909
-
-
Merrick, M.J.1
-
93
-
-
67949114190
-
Construction and functional analyses of a comprehensive sigma54 site-directed mutant library using alanine-cysteine mutagenesis
-
Xiao Y, Wigneshweraraj SR, Weinzierl R, Wang YP, Buck M. Construction and functional analyses of a comprehensive sigma54 site-directed mutant library using alanine-cysteine mutagenesis. Nucleic Acids Res 2009, 37(13):4482-4497.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.13
, pp. 4482-4497
-
-
Xiao, Y.1
Wigneshweraraj, S.R.2
Weinzierl, R.3
Wang, Y.P.4
Buck, M.5
-
94
-
-
0034532787
-
Identification of potential sigma(N)-dependent promoters in bacterial genomes
-
Studholme DJ, Buck M, Nixon T. Identification of potential sigma(N)-dependent promoters in bacterial genomes. Microbiology 2000, 146(Pt 12):3021-3023.
-
(2000)
Microbiology
, vol.146
, Issue.PART 12
, pp. 3021-3023
-
-
Studholme, D.J.1
Buck, M.2
Nixon, T.3
-
95
-
-
38549162091
-
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
-
Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res 2008, (36 Database):D93-96.
-
(2008)
Nucleic Acids Res
, Issue.36 DATABASE
-
-
Sierro, N.1
Makita, Y.2
de Hoon, M.3
Nakai, K.4
-
96
-
-
38549140094
-
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
-
Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, et al. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res 2008, (36 Database):D120-124.
-
(2008)
Nucleic Acids Res
, Issue.36 DATABASE
-
-
Gama-Castro, S.1
Jiménez-Jacinto, V.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Peñaloza-Spinola, M.I.5
Contreras-Moreira, B.6
Segura-Salazar, J.7
Muñiz-Rascado, L.8
Martínez-Flores, I.9
Salgado, H.10
-
97
-
-
51149098349
-
Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli
-
Pesavento C, Becker G, Sommerfeldt N, Possling A, Tschowri N, Mehlis A, Hengge R. Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli. Genes Dev 2008, 22(17):2434-2446.
-
(2008)
Genes Dev
, vol.22
, Issue.17
, pp. 2434-2446
-
-
Pesavento, C.1
Becker, G.2
Sommerfeldt, N.3
Possling, A.4
Tschowri, N.5
Mehlis, A.6
Hengge, R.7
-
98
-
-
9144265895
-
Retrieving sequences of enzymes experimentally characterized but erroneously annotated: the case of the putrescine carbamoyltransferase
-
Naumoff DG, Xu Y, Glansdorff N, Labedan B. Retrieving sequences of enzymes experimentally characterized but erroneously annotated: the case of the putrescine carbamoyltransferase. BMC Genomics 2004, 5(1):52.
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 52
-
-
Naumoff, D.G.1
Xu, Y.2
Glansdorff, N.3
Labedan, B.4
-
99
-
-
79952327376
-
Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae
-
Göpel Y, Lüttmann D, Heroven AK, Reichenbach B, Dersch P, Görke B. Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae. Nucleic Acids Res 2011, 39(4):1294-1309.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.4
, pp. 1294-1309
-
-
Göpel, Y.1
Lüttmann, D.2
Heroven, A.K.3
Reichenbach, B.4
Dersch, P.5
Görke, B.6
-
100
-
-
70450200262
-
Dual control by perfectly overlapping sigma 54- and sigma 70- promoters adjusts small RNA GlmY expression to different environmental signals
-
Reichenbach B, Göpel Y, Görke B. Dual control by perfectly overlapping sigma 54- and sigma 70- promoters adjusts small RNA GlmY expression to different environmental signals. Mol Microbiol 2009, 74(5):1054-1070.
-
(2009)
Mol Microbiol
, vol.74
, Issue.5
, pp. 1054-1070
-
-
Reichenbach, B.1
Göpel, Y.2
Görke, B.3
-
101
-
-
34548317154
-
Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli
-
Kalamorz F, Reichenbach B, März W, Rak B, Görke B. Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli. Mol Microbiol 2007, 65(6):1518-1533.
-
(2007)
Mol Microbiol
, vol.65
, Issue.6
, pp. 1518-1533
-
-
Kalamorz, F.1
Reichenbach, B.2
März, W.3
Rak, B.4
Görke, B.5
-
102
-
-
46049106143
-
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli
-
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Dehò G, Silhavy TJ, Polissi A. Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli. J Bacteriol 2008, 190(13):4460-4469.
-
(2008)
J Bacteriol
, vol.190
, Issue.13
, pp. 4460-4469
-
-
Sperandeo, P.1
Lau, F.K.2
Carpentieri, A.3
De Castro, C.4
Molinaro, A.5
Dehò, G.6
Silhavy, T.J.7
Polissi, A.8
-
103
-
-
65349145827
-
Biogenesis of outer membranes in Gram-negative bacteria
-
Tokuda H. Biogenesis of outer membranes in Gram-negative bacteria. Biosci Biotechnol Biochem 2009, 73(3):465-473.
-
(2009)
Biosci Biotechnol Biochem
, vol.73
, Issue.3
, pp. 465-473
-
-
Tokuda, H.1
-
104
-
-
77958502198
-
Structure and functional analysis of LptC, a conserved membrane protein involved in the lipopolysaccharide export pathway in Escherichia coli
-
Tran AX, Dong C, Whitfield C. Structure and functional analysis of LptC, a conserved membrane protein involved in the lipopolysaccharide export pathway in Escherichia coli. J Biol Chem 2010, 285(43):33529-33539.
-
(2010)
J Biol Chem
, vol.285
, Issue.43
, pp. 33529-33539
-
-
Tran, A.X.1
Dong, C.2
Whitfield, C.3
-
105
-
-
33745974919
-
Non-essential KDO biosynthesis and new essential cell envelope biogenesis genes in the Escherichia coli yrbG-yhbG locus
-
Sperandeo P, Pozzi C, Deho G, Polissi A. Non-essential KDO biosynthesis and new essential cell envelope biogenesis genes in the Escherichia coli yrbG-yhbG locus. Res Microbiol 2006, 157(6):547-558.
-
(2006)
Res Microbiol
, vol.157
, Issue.6
, pp. 547-558
-
-
Sperandeo, P.1
Pozzi, C.2
Deho, G.3
Polissi, A.4
-
106
-
-
40549113322
-
Role of HPF (hibernation promoting factor) in translational activity in Escherichia coli
-
Ueta M, Ohniwa RL, Yoshida H, Maki Y, Wada C, Wada A. Role of HPF (hibernation promoting factor) in translational activity in Escherichia coli. J Biochem 2008, 143(3):425-433.
-
(2008)
J Biochem
, vol.143
, Issue.3
, pp. 425-433
-
-
Ueta, M.1
Ohniwa, R.L.2
Yoshida, H.3
Maki, Y.4
Wada, C.5
Wada, A.6
-
107
-
-
37349094934
-
Fructose-1,6-bisphosphate acts both as an inducer and as a structural cofactor of the central glycolytic genes repressor (CggR)
-
Zorrilla S, Chaix D, Ortega A, Alfonso C, Doan T, Margeat E, Rivas G, Aymerich S, Declerck N, Royer CA. Fructose-1,6-bisphosphate acts both as an inducer and as a structural cofactor of the central glycolytic genes repressor (CggR). Biochemistry 2007, 46(51):14996-15008.
-
(2007)
Biochemistry
, vol.46
, Issue.51
, pp. 14996-15008
-
-
Zorrilla, S.1
Chaix, D.2
Ortega, A.3
Alfonso, C.4
Doan, T.5
Margeat, E.6
Rivas, G.7
Aymerich, S.8
Declerck, N.9
Royer, C.A.10
-
108
-
-
39949084468
-
IPath: interactive exploration of biochemical pathways and networks
-
Letunic I, Yamada T, Kanehisa M, Bork P. iPath: interactive exploration of biochemical pathways and networks. Trends Biochem Sci 2008, 33(3):101-103.
-
(2008)
Trends Biochem Sci
, vol.33
, Issue.3
, pp. 101-103
-
-
Letunic, I.1
Yamada, T.2
Kanehisa, M.3
Bork, P.4
-
109
-
-
34250159479
-
Bacterial exopolysaccharides - a perception
-
Kumar AS, Mody K, Jha B. Bacterial exopolysaccharides - a perception. J Basic Microbiol 2007, 47(2):103-117.
-
(2007)
J Basic Microbiol
, vol.47
, Issue.2
, pp. 103-117
-
-
Kumar, A.S.1
Mody, K.2
Jha, B.3
-
111
-
-
75649132267
-
Wall teichoic acid function, biosynthesis, and inhibition
-
Swoboda JG, Campbell J, Meredith TC, Walker S. Wall teichoic acid function, biosynthesis, and inhibition. Chembiochem 2010, 11(1):35-45.
-
(2010)
Chembiochem
, vol.11
, Issue.1
, pp. 35-45
-
-
Swoboda, J.G.1
Campbell, J.2
Meredith, T.C.3
Walker, S.4
-
112
-
-
34548605458
-
Lipid A modification systems in gram-negative bacteria
-
Raetz CR, Reynolds CM, Trent MS, Bishop RE. Lipid A modification systems in gram-negative bacteria. Annu Rev Biochem 2007, 76:295-329.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 295-329
-
-
Raetz, C.R.1
Reynolds, C.M.2
Trent, M.S.3
Bishop, R.E.4
-
113
-
-
39149083088
-
Cytoplasmic steps of peptidoglycan biosynthesis
-
Barreteau H, Kovač A, Boniface A, Sova M, Gobec S, Blanot D. Cytoplasmic steps of peptidoglycan biosynthesis. FEMS Microbiol Rev 2008, 32(2):168-207.
-
(2008)
FEMS Microbiol Rev
, vol.32
, Issue.2
, pp. 168-207
-
-
Barreteau, H.1
Kovač, A.2
Boniface, A.3
Sova, M.4
Gobec, S.5
Blanot, D.6
-
114
-
-
79954506886
-
Assembly of cellular surface structures
-
Stuttgart: Thieme Verlag, Lengeler JW, Drews G, Schlegel HG
-
Jann K, Jann B. Assembly of cellular surface structures. Biology of the prokaryotes 1999, 555-569. Stuttgart: Thieme Verlag, Lengeler JW, Drews G, Schlegel HG.
-
(1999)
Biology of the prokaryotes
, pp. 555-569
-
-
Jann, K.1
Jann, B.2
-
115
-
-
1942476063
-
Characterization of the alternative sigma factor sigma54 and the transcriptional regulator FleQ of Legionella pneumophila, which are both involved in the regulation cascade of flagellar gene expression
-
Jacobi S, Schade R, Heuner K. Characterization of the alternative sigma factor sigma54 and the transcriptional regulator FleQ of Legionella pneumophila, which are both involved in the regulation cascade of flagellar gene expression. J Bacteriol 2004, 186(9):2540-2547.
-
(2004)
J Bacteriol
, vol.186
, Issue.9
, pp. 2540-2547
-
-
Jacobi, S.1
Schade, R.2
Heuner, K.3
-
116
-
-
34948837886
-
Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the sigma54-dependent regulon in Campylobacter jejuni
-
Kamal N, Dorrell N, Jagannathan A, Turner SM, Constantinidou C, Studholme DJ, Marsden G, Hinds J, Laing KG, Wren BW, et al. Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the sigma54-dependent regulon in Campylobacter jejuni. Microbiology 2007, 153(Pt 9):3099-3111.
-
(2007)
Microbiology
, vol.153
, Issue.PART 9
, pp. 3099-3111
-
-
Kamal, N.1
Dorrell, N.2
Jagannathan, A.3
Turner, S.M.4
Constantinidou, C.5
Studholme, D.J.6
Marsden, G.7
Hinds, J.8
Laing, K.G.9
Wren, B.W.10
-
117
-
-
27944478488
-
The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins
-
Poggio S, Osorio A, Dreyfus G, Camarena L. The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer-binding proteins. Mol Microbiol 2005, 58(4):969-983.
-
(2005)
Mol Microbiol
, vol.58
, Issue.4
, pp. 969-983
-
-
Poggio, S.1
Osorio, A.2
Dreyfus, G.3
Camarena, L.4
-
118
-
-
47749087898
-
Ralstonia eutropha H16 flagellation changes according to nutrient supply and state of poly(3-hydroxybutyrate) accumulation
-
Raberg M, Reinecke F, Reichelt R, Malkus U, König S, Pötter M, Fricke WF, Pohlmann A, Voigt B, Hecker M, et al. Ralstonia eutropha H16 flagellation changes according to nutrient supply and state of poly(3-hydroxybutyrate) accumulation. Appl Environ Microbiol 2008, 74(14):4477-4490.
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.14
, pp. 4477-4490
-
-
Raberg, M.1
Reinecke, F.2
Reichelt, R.3
Malkus, U.4
König, S.5
Pötter, M.6
Fricke, W.F.7
Pohlmann, A.8
Voigt, B.9
Hecker, M.10
-
119
-
-
72949124219
-
Sense and sensibility: flagellum-mediated gene regulation
-
Anderson JK, Smith TG, Hoover TR. Sense and sensibility: flagellum-mediated gene regulation. Trends Microbiol 2010, 18(1):30-37.
-
(2010)
Trends Microbiol
, vol.18
, Issue.1
, pp. 30-37
-
-
Anderson, J.K.1
Smith, T.G.2
Hoover, T.R.3
-
120
-
-
33846349924
-
Rooting the tree of life by transition analyses
-
Cavalier-Smith T. Rooting the tree of life by transition analyses. Biol Direct 2006, 1:19.
-
(2006)
Biol Direct
, vol.1
, pp. 19
-
-
Cavalier-Smith, T.1
-
121
-
-
75449103540
-
Deep phylogeny, ancestral groups and the four ages of life
-
Cavalier-Smith T. Deep phylogeny, ancestral groups and the four ages of life. Philos Trans R Soc Lond B Biol Sci 2010, 365(1537):111-132.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, Issue.1537
, pp. 111-132
-
-
Cavalier-Smith, T.1
-
122
-
-
0020045699
-
Production and properties of cyanobacterial endotoxins
-
Keleti G, Sykora JL. Production and properties of cyanobacterial endotoxins. Appl Environ Microbiol 1982, 43(1):104-109.
-
(1982)
Appl Environ Microbiol
, vol.43
, Issue.1
, pp. 104-109
-
-
Keleti, G.1
Sykora, J.L.2
-
123
-
-
77950451125
-
A link between the assembly of flagella and lipooligosaccharide of the Gram-negative bacterium Campylobacter jejuni
-
Cullen TW, Trent MS. A link between the assembly of flagella and lipooligosaccharide of the Gram-negative bacterium Campylobacter jejuni. Proc Natl Acad Sci USA 2010, 107(11):5160-5165.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.11
, pp. 5160-5165
-
-
Cullen, T.W.1
Trent, M.S.2
-
124
-
-
69249246978
-
Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm
-
Kyriakidis DA, Tiligada E. Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. Amino Acids 2009, 37(3):443-458.
-
(2009)
Amino Acids
, vol.37
, Issue.3
, pp. 443-458
-
-
Kyriakidis, D.A.1
Tiligada, E.2
-
125
-
-
44449170459
-
Unraveling the evolutionary history of the phosphoryl-transfer chain of the phosphoenolpyruvate:phosphotransferase system through phylogenetic analyses and genome context
-
Comas I, González-Candelas F, Zúñiga M. Unraveling the evolutionary history of the phosphoryl-transfer chain of the phosphoenolpyruvate:phosphotransferase system through phylogenetic analyses and genome context. BMC Evol Biol 2008, 8:147.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 147
-
-
Comas, I.1
González-Candelas, F.2
Zúñiga, M.3
-
126
-
-
29144518548
-
Comparative genomic analyses of the bacterial phosphotransferase system
-
Barabote RD, Saier MH. Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev 2005, 69(4):608-634.
-
(2005)
Microbiol Mol Biol Rev
, vol.69
, Issue.4
, pp. 608-634
-
-
Barabote, R.D.1
Saier, M.H.2
-
127
-
-
34247146736
-
Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli
-
Mao XJ, Huo YX, Buck M, Kolb A, Wang YP. Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli. Nucleic Acids Res 2007, 35(5):1432-1440.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.5
, pp. 1432-1440
-
-
Mao, X.J.1
Huo, Y.X.2
Buck, M.3
Kolb, A.4
Wang, Y.P.5
-
128
-
-
77954001197
-
The phosphoenolpyruvate phosphotransferase system regulates Vibrio cholerae biofilm formation through multiple independent pathways
-
Houot L, Chang S, Pickering BS, Absalon C, Watnick PI. The phosphoenolpyruvate phosphotransferase system regulates Vibrio cholerae biofilm formation through multiple independent pathways. J Bacteriol 2010, 192(12):3055-3067.
-
(2010)
J Bacteriol
, vol.192
, Issue.12
, pp. 3055-3067
-
-
Houot, L.1
Chang, S.2
Pickering, B.S.3
Absalon, C.4
Watnick, P.I.5
-
129
-
-
77955965293
-
The phosphoenolpyruvate phosphotransferase system: as important for biofilm formation by Vibrio cholerae as it is for metabolism in Escherichia coli
-
Lazazzera BA. The phosphoenolpyruvate phosphotransferase system: as important for biofilm formation by Vibrio cholerae as it is for metabolism in Escherichia coli. J Bacteriol 2010, 192(16):4083-4085.
-
(2010)
J Bacteriol
, vol.192
, Issue.16
, pp. 4083-4085
-
-
Lazazzera, B.A.1
-
130
-
-
0031943540
-
Antagonistic effects of dual PTS-catalysed phosphorylation on the Bacillus subtilis transcriptional activator LevR
-
Martin-Verstraete I, Charrier V, Stülke J, Galinier A, Erni B, Rapoport G, Deutscher J. Antagonistic effects of dual PTS-catalysed phosphorylation on the Bacillus subtilis transcriptional activator LevR. Mol Microbiol 1998, 28(2):293-303.
-
(1998)
Mol Microbiol
, vol.28
, Issue.2
, pp. 293-303
-
-
Martin-Verstraete, I.1
Charrier, V.2
Stülke, J.3
Galinier, A.4
Erni, B.5
Rapoport, G.6
Deutscher, J.7
-
131
-
-
0027366581
-
Cloning and sequencing of a cellobiose phosphotransferase system operon from Bacillus stearothermophilus XL-65-6 and functional expression in Escherichia coli
-
Lai X, Ingram LO. Cloning and sequencing of a cellobiose phosphotransferase system operon from Bacillus stearothermophilus XL-65-6 and functional expression in Escherichia coli. J Bacteriol 1993, 175(20):6441-6450.
-
(1993)
J Bacteriol
, vol.175
, Issue.20
, pp. 6441-6450
-
-
Lai, X.1
Ingram, L.O.2
-
132
-
-
23844540693
-
An esterase gene from Lactobacillus casei cotranscribed with genes encoding a phosphoenolpyruvate:sugar phosphotransferase system and regulated by a LevR-like activator and sigma54 factor
-
Yebra MJ, Viana R, Monedero V, Deutscher J, Pérez-Martinez G. An esterase gene from Lactobacillus casei cotranscribed with genes encoding a phosphoenolpyruvate:sugar phosphotransferase system and regulated by a LevR-like activator and sigma54 factor. J Mol Microbiol Biotechnol 2004, 8(2):117-128.
-
(2004)
J Mol Microbiol Biotechnol
, vol.8
, Issue.2
, pp. 117-128
-
-
Yebra, M.J.1
Viana, R.2
Monedero, V.3
Deutscher, J.4
Pérez-Martinez, G.5
-
133
-
-
1242273731
-
Deregulation of Listeria monocytogenes virulence gene expression by two distinct and semi-independent pathways
-
Milenbachs Lukowiak A, Mueller KJ, Freitag NE, Youngman P. Deregulation of Listeria monocytogenes virulence gene expression by two distinct and semi-independent pathways. Microbiology 2004, 150(Pt 2):321-333.
-
(2004)
Microbiology
, vol.150
, Issue.PART 2
, pp. 321-333
-
-
Milenbachs Lukowiak, A.1
Mueller, K.J.2
Freitag, N.E.3
Youngman, P.4
-
134
-
-
69949107818
-
An alternative route for recycling of N-acetylglucosamine from peptidoglycan involves the N-acetylglucosamine phosphotransferase system in Escherichia coli
-
Plumbridge J. An alternative route for recycling of N-acetylglucosamine from peptidoglycan involves the N-acetylglucosamine phosphotransferase system in Escherichia coli. J Bacteriol 2009, 191(18):5641-5647.
-
(2009)
J Bacteriol
, vol.191
, Issue.18
, pp. 5641-5647
-
-
Plumbridge, J.1
-
135
-
-
0032831101
-
Structure/function studies on enzymes in the diaminopimelate pathway of bacterial cell wall biosynthesis
-
Born TL, Blanchard JS. Structure/function studies on enzymes in the diaminopimelate pathway of bacterial cell wall biosynthesis. Curr Opin Chem Biol 1999, 3(5):607-613.
-
(1999)
Curr Opin Chem Biol
, vol.3
, Issue.5
, pp. 607-613
-
-
Born, T.L.1
Blanchard, J.S.2
-
136
-
-
0027335498
-
Relationships between C4 dicarboxylic acid transport and chemotaxis in Rhizobium meliloti
-
Robinson JB, Bauer WD. Relationships between C4 dicarboxylic acid transport and chemotaxis in Rhizobium meliloti. J Bacteriol 1993, 175(8):2284-2291.
-
(1993)
J Bacteriol
, vol.175
, Issue.8
, pp. 2284-2291
-
-
Robinson, J.B.1
Bauer, W.D.2
-
137
-
-
4444375159
-
Dicarboxylate transport by rhizobia
-
Yurgel SN, Kahn ML. Dicarboxylate transport by rhizobia. FEMS Microbiol Rev 2004, 28(4):489-501.
-
(2004)
FEMS Microbiol Rev
, vol.28
, Issue.4
, pp. 489-501
-
-
Yurgel, S.N.1
Kahn, M.L.2
-
138
-
-
0033621091
-
An enhancer element located downstream of the major glutamate dehydrogenase gene of Bacillus subtilis
-
Belitsky BR, Sonenshein AL. An enhancer element located downstream of the major glutamate dehydrogenase gene of Bacillus subtilis. Proc Natl Acad Sci USA 1999, 96(18):10290-10295.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.18
, pp. 10290-10295
-
-
Belitsky, B.R.1
Sonenshein, A.L.2
-
139
-
-
78651086262
-
Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli
-
Dong T, Yu R, Schellhorn H. Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli. Mol Microbiol 2011, 79(2):375-386.
-
(2011)
Mol Microbiol
, vol.79
, Issue.2
, pp. 375-386
-
-
Dong, T.1
Yu, R.2
Schellhorn, H.3
-
140
-
-
77149153391
-
The complexity of the 'simple' two-component system KdpD/KdpE in Escherichia coli
-
Heermann R, Jung K. The complexity of the 'simple' two-component system KdpD/KdpE in Escherichia coli. FEMS Microbiol Lett 2010, 304(2):97-106.
-
(2010)
FEMS Microbiol Lett
, vol.304
, Issue.2
, pp. 97-106
-
-
Heermann, R.1
Jung, K.2
-
141
-
-
77955652704
-
A field guide to bacterial swarming motility
-
Kearns DB. A field guide to bacterial swarming motility. Nat Rev Microbiol 2010, 8(9):634-644.
-
(2010)
Nat Rev Microbiol
, vol.8
, Issue.9
, pp. 634-644
-
-
Kearns, D.B.1
-
142
-
-
66749083981
-
Signals, regulatory networks, and materials that build and break bacterial biofilms
-
Karatan E, Watnick P. Signals, regulatory networks, and materials that build and break bacterial biofilms. Microbiol Mol Biol Rev 2009, 73(2):310-347.
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, Issue.2
, pp. 310-347
-
-
Karatan, E.1
Watnick, P.2
-
143
-
-
58149200954
-
Database resources of the National Center for Biotechnology Information
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2010, (38 Database):D5-16.
-
(2010)
Nucleic Acids Res
, Issue.38 DATABASE
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
Canese, K.6
Chetvernin, V.7
Church, D.M.8
Dicuccio, M.9
Federhen, S.10
-
144
-
-
75849153303
-
The Universal Protein Resource (UniProt) in 2010
-
UniprotConsortium
-
UniprotConsortium The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res 2010, (38 Database):D142-148. UniprotConsortium.
-
(2010)
Nucleic Acids Res
, Issue.38 DATABASE
-
-
-
145
-
-
33644874819
-
From genomics to chemical genomics: new developments in KEGG
-
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 2006, (34 Database):D354-357.
-
(2006)
Nucleic Acids Res
, Issue.34 DATABASE
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
146
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
147
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR. A new generation of homology search tools based on probabilistic inference. Genome Inform 2009, 23(1):205-211.
-
(2009)
Genome Inform
, vol.23
, Issue.1
, pp. 205-211
-
-
Eddy, S.R.1
-
148
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23(21):2947-2948.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
149
-
-
34347376565
-
Orthology prediction at scalable resolution by phylogenetic tree analysis
-
van der Heijden RT, Snel B, van Noort V, Huynen MA. Orthology prediction at scalable resolution by phylogenetic tree analysis. BMC Bioinformatics 2007, 8:83.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 83
-
-
van der Heijden, R.T.1
Snel, B.2
van Noort, V.3
Huynen, M.A.4
-
150
-
-
38649092410
-
Dendroscope: An interactive viewer for large phylogenetic trees
-
Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R. Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics 2007, 8:460.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 460
-
-
Huson, D.H.1
Richter, D.C.2
Rausch, C.3
Dezulian, T.4
Franz, M.5
Rupp, R.6
-
151
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004, 14(6):1188-1190.
-
(2004)
Genome Res
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
153
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, et al. Assessing computational tools for the discovery of transcription factor binding sites. Nat Biotechnol 2005, 23(1):137-144.
-
(2005)
Nat Biotechnol
, vol.23
, Issue.1
, pp. 137-144
-
-
Tompa, M.1
Li, N.2
Bailey, T.L.3
Church, G.M.4
De Moor, B.5
Eskin, E.6
Favorov, A.V.7
Frith, M.C.8
Fu, Y.9
Kent, W.J.10
-
154
-
-
38449096936
-
Finding regulatory elements and regulatory motifs: a general probabilistic framework
-
van Nimwegen E. Finding regulatory elements and regulatory motifs: a general probabilistic framework. BMC Bioinformatics 2007, 8(Suppl 6):S4.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 6
-
-
van Nimwegen, E.1
-
155
-
-
17644369311
-
Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites
-
Gershenzon NI, Stormo GD, Ioshikhes IP. Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites. Nucleic Acids Res 2005, 33(7):2290-2301.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.7
, pp. 2290-2301
-
-
Gershenzon, N.I.1
Stormo, G.D.2
Ioshikhes, I.P.3
-
156
-
-
69249132587
-
Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist
-
Mrázek J. Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist. Brief Bioinform 2009, 10(5):525-536.
-
(2009)
Brief Bioinform
, vol.10
, Issue.5
, pp. 525-536
-
-
Mrázek, J.1
-
157
-
-
0030449157
-
The statistical significance of nucleotide position-weight matrix matches
-
Claverie JM, Audic S. The statistical significance of nucleotide position-weight matrix matches. Comput Appl Biosci 1996, 12(5):431-439.
-
(1996)
Comput Appl Biosci
, vol.12
, Issue.5
, pp. 431-439
-
-
Claverie, J.M.1
Audic, S.2
-
158
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 2009, (37 Web Server):W202-208.
-
(2009)
Nucleic Acids Res
, Issue.37 WEB SERVER
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
159
-
-
0034159917
-
Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis
-
Miwa Y, Nakata A, Ogiwara A, Yamamoto M, Fujita Y. Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis. Nucleic Acids Res 2000, 28(5):1206-1210.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.5
, pp. 1206-1210
-
-
Miwa, Y.1
Nakata, A.2
Ogiwara, A.3
Yamamoto, M.4
Fujita, Y.5
-
160
-
-
0346256789
-
The Spo0A regulon of Bacillus subtilis
-
Molle V, Fujita M, Jensen ST, Eichenberger P, González-Pastor JE, Liu JS, Losick R. The Spo0A regulon of Bacillus subtilis. Mol Microbiol 2003, 50(5):1683-1701.
-
(2003)
Mol Microbiol
, vol.50
, Issue.5
, pp. 1683-1701
-
-
Molle, V.1
Fujita, M.2
Jensen, S.T.3
Eichenberger, P.4
González-Pastor, J.E.5
Liu, J.S.6
Losick, R.7
-
161
-
-
34547838618
-
Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation
-
Hauser F, Pessi G, Friberg M, Weber C, Rusca N, Lindemann A, Fischer HM, Hennecke H. Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation. Mol Genet Genomics 2007, 278(3):255-271.
-
(2007)
Mol Genet Genomics
, vol.278
, Issue.3
, pp. 255-271
-
-
Hauser, F.1
Pessi, G.2
Friberg, M.3
Weber, C.4
Rusca, N.5
Lindemann, A.6
Fischer, H.M.7
Hennecke, H.8
-
162
-
-
33644907541
-
Dichotomy of major bacterial phyla inferred from gene arrangement comparisons
-
Kunisawa T. Dichotomy of major bacterial phyla inferred from gene arrangement comparisons. J Theor Biol 2006, 239(3):367-375.
-
(2006)
J Theor Biol
, vol.239
, Issue.3
, pp. 367-375
-
-
Kunisawa, T.1
-
163
-
-
65549153499
-
Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1)
-
Herlemann DP, Geissinger O, Ikeda-Ohtsubo W, Kunin V, Sun H, Lapidus A, Hugenholtz P, Brune A. Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1). Appl Environ Microbiol 2009, 75(9):2841-2849.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.9
, pp. 2841-2849
-
-
Herlemann, D.P.1
Geissinger, O.2
Ikeda-Ohtsubo, W.3
Kunin, V.4
Sun, H.5
Lapidus, A.6
Hugenholtz, P.7
Brune, A.8
-
164
-
-
0036597701
-
Critical issues in bacterial phylogeny
-
Gupta RS, Griffiths E. Critical issues in bacterial phylogeny. Theor Popul Biol 2002, 61(4):423-434.
-
(2002)
Theor Popul Biol
, vol.61
, Issue.4
, pp. 423-434
-
-
Gupta, R.S.1
Griffiths, E.2
-
165
-
-
0042812120
-
Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov
-
Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, Nakamura K. Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol 2003, 53(Pt 4):1155-1163.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, Issue.PART 4
, pp. 1155-1163
-
-
Zhang, H.1
Sekiguchi, Y.2
Hanada, S.3
Hugenholtz, P.4
Kim, H.5
Kamagata, Y.6
Nakamura, K.7
-
166
-
-
77952724095
-
Evaluation of the phylogenetic position of the sulfate-reducing bacterium Thermodesulfovibrio yellowstonii (phylum Nitrospirae) by means of gene order data from completely sequenced genomes
-
Kunisawa T. Evaluation of the phylogenetic position of the sulfate-reducing bacterium Thermodesulfovibrio yellowstonii (phylum Nitrospirae) by means of gene order data from completely sequenced genomes. Int J Syst Evol Microbiol 2010, 60(Pt 5):1090-1102.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, Issue.PART 5
, pp. 1090-1102
-
-
Kunisawa, T.1
-
167
-
-
65249126970
-
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
-
Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbø CL, Doolittle WF, Gogarten JP, et al. On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proc Natl Acad Sci USA 2009, 106(14):5865-5870.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.14
, pp. 5865-5870
-
-
Zhaxybayeva, O.1
Swithers, K.S.2
Lapierre, P.3
Fournier, G.P.4
Bickhart, D.M.5
DeBoy, R.T.6
Nelson, K.E.7
Nesbø, C.L.8
Doolittle, W.F.9
Gogarten, J.P.10
-
168
-
-
79551473440
-
Cell envelope architecture in the Chloroflexi: a shifting frontline in a phylogenetic turf war
-
Sutcliffe IC. Cell envelope architecture in the Chloroflexi: a shifting frontline in a phylogenetic turf war. Environ Microbiol 2011, 13(2):279-282.
-
(2011)
Environ Microbiol
, vol.13
, Issue.2
, pp. 279-282
-
-
Sutcliffe, I.C.1
-
169
-
-
1842637864
-
Thermobaculum terrenum gen. nov., sp. nov.: a non-phototrophic gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia
-
Botero LM, Brown KB, Brumefield S, Burr M, Castenholz RW, Young M, McDermott TR. Thermobaculum terrenum gen. nov., sp. nov.: a non-phototrophic gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia. Arch Microbiol 2004, 181(4):269-277.
-
(2004)
Arch Microbiol
, vol.181
, Issue.4
, pp. 269-277
-
-
Botero, L.M.1
Brown, K.B.2
Brumefield, S.3
Burr, M.4
Castenholz, R.W.5
Young, M.6
McDermott, T.R.7
-
170
-
-
0019445509
-
Isolation and characterization of the plasma membrane and the outer membrane of Deinococcus radiodurans strain Sark
-
Thompson BG, Murray RG. Isolation and characterization of the plasma membrane and the outer membrane of Deinococcus radiodurans strain Sark. Can J Microbiol 1981, 27(7):729-734.
-
(1981)
Can J Microbiol
, vol.27
, Issue.7
, pp. 729-734
-
-
Thompson, B.G.1
Murray, R.G.2
-
171
-
-
0021828111
-
Dictyoglomus thermophilum gen. nov., sp. nov., a chemoorganotrophic, anaerobic, thermophilic bacterium
-
Saiki J, Kobayashi Y, Kawagoe K, Beppu T. Dictyoglomus thermophilum gen. nov., sp. nov., a chemoorganotrophic, anaerobic, thermophilic bacterium. Int J Syst Bacteriol 1985, 35(3):253-259.
-
(1985)
Int J Syst Bacteriol
, vol.35
, Issue.3
, pp. 253-259
-
-
Saiki, J.1
Kobayashi, Y.2
Kawagoe, K.3
Beppu, T.4
-
172
-
-
38949210770
-
Xylanase attachment to the cell wall of the hyperthermophilic bacterium Thermotoga maritima
-
Liebl W, Winterhalter C, Baumeister W, Armbrecht M, Valdez M. Xylanase attachment to the cell wall of the hyperthermophilic bacterium Thermotoga maritima. J Bacteriol 2008, 190(4):1350-1358.
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1350-1358
-
-
Liebl, W.1
Winterhalter, C.2
Baumeister, W.3
Armbrecht, M.4
Valdez, M.5
-
173
-
-
0029822092
-
The RpoN-box motif of the RNA polymerase sigma factor sigma N plays a role in promoter recognition
-
Taylor M, Butler R, Chambers S, Casimiro M, Badii F, Merrick M. The RpoN-box motif of the RNA polymerase sigma factor sigma N plays a role in promoter recognition. Mol Microbiol 1996, 22(5):1045-1054.
-
(1996)
Mol Microbiol
, vol.22
, Issue.5
, pp. 1045-1054
-
-
Taylor, M.1
Butler, R.2
Chambers, S.3
Casimiro, M.4
Badii, F.5
Merrick, M.6
-
174
-
-
34248578701
-
Structural basis of DNA recognition by the alternative sigma-factor, sigma54
-
Doucleff M, Pelton JG, Lee PS, Nixon BT, Wemmer DE. Structural basis of DNA recognition by the alternative sigma-factor, sigma54. J Mol Biol 2007, 369(4):1070-1078.
-
(2007)
J Mol Biol
, vol.369
, Issue.4
, pp. 1070-1078
-
-
Doucleff, M.1
Pelton, J.G.2
Lee, P.S.3
Nixon, B.T.4
Wemmer, D.E.5
-
175
-
-
0043032654
-
Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element
-
Burrows PC, Severinov K, Ishihama A, Buck M, Wigneshweraraj SR. Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element. J Biol Chem 2003, 278(32):29728-29743.
-
(2003)
J Biol Chem
, vol.278
, Issue.32
, pp. 29728-29743
-
-
Burrows, P.C.1
Severinov, K.2
Ishihama, A.3
Buck, M.4
Wigneshweraraj, S.R.5
-
176
-
-
0034836583
-
Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains
-
Hutcheson SW, Bretz J, Sussan T, Jin S, Pak K. Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains. J Bacteriol 2001, 183(19):5589-5598.
-
(2001)
J Bacteriol
, vol.183
, Issue.19
, pp. 5589-5598
-
-
Hutcheson, S.W.1
Bretz, J.2
Sussan, T.3
Jin, S.4
Pak, K.5
-
177
-
-
2942582317
-
Cross-regulation in Vibrio parahaemolyticus: compensatory activation of polar flagellar genes by the lateral flagellar regulator LafK
-
Kim YK, McCarter LL. Cross-regulation in Vibrio parahaemolyticus: compensatory activation of polar flagellar genes by the lateral flagellar regulator LafK. J Bacteriol 2004, 186(12):4014-4018.
-
(2004)
J Bacteriol
, vol.186
, Issue.12
, pp. 4014-4018
-
-
Kim, Y.K.1
McCarter, L.L.2
-
178
-
-
0038607972
-
A developmentally regulated two-component signal transduction system in Chlamydia
-
Koo IC, Stephens RS. A developmentally regulated two-component signal transduction system in Chlamydia. J Biol Chem 2003, 278(19):17314-17319.
-
(2003)
J Biol Chem
, vol.278
, Issue.19
, pp. 17314-17319
-
-
Koo, I.C.1
Stephens, R.S.2
-
179
-
-
3042733355
-
Helicobacter pylori FlgR is an enhancer-independent activator of sigma54-RNA polymerase holoenzyme
-
Brahmachary P, Dashti MG, Olson JW, Hoover TR. Helicobacter pylori FlgR is an enhancer-independent activator of sigma54-RNA polymerase holoenzyme. J Bacteriol 2004, 186(14):4535-4542.
-
(2004)
J Bacteriol
, vol.186
, Issue.14
, pp. 4535-4542
-
-
Brahmachary, P.1
Dashti, M.G.2
Olson, J.W.3
Hoover, T.R.4
-
180
-
-
0034461479
-
Developmental aggregation of Myxococcus xanthus requires frgA, an frz-related gene
-
Cho K, Treuner-Lange A, O'Connor KA, Zusman DR. Developmental aggregation of Myxococcus xanthus requires frgA, an frz-related gene. J Bacteriol 2000, 182(23):6614-6621.
-
(2000)
J Bacteriol
, vol.182
, Issue.23
, pp. 6614-6621
-
-
Cho, K.1
Treuner-Lange, A.2
O'Connor, K.A.3
Zusman, D.R.4
-
181
-
-
53449090658
-
Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi
-
Ouyang Z, Blevins JS, Norgard MV. Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi. Microbiology 2008, 154(Pt 9):2641-2658.
-
(2008)
Microbiology
, vol.154
, Issue.PART 9
, pp. 2641-2658
-
-
Ouyang, Z.1
Blevins, J.S.2
Norgard, M.V.3
-
182
-
-
33646346867
-
Genome-wide transcriptional profile of Escherichia coli in response to high levels of the second messenger 3',5'-cyclic diguanylic acid
-
Méndez-Ortiz MM, Hyodo M, Hayakawa Y, Membrillo-Hernández J. Genome-wide transcriptional profile of Escherichia coli in response to high levels of the second messenger 3',5'-cyclic diguanylic acid. J Biol Chem 2006, 281(12):8090-8099.
-
(2006)
J Biol Chem
, vol.281
, Issue.12
, pp. 8090-8099
-
-
Méndez-Ortiz, M.M.1
Hyodo, M.2
Hayakawa, Y.3
Membrillo-Hernández, J.4
-
183
-
-
70349928941
-
Role of NtrC-regulated exopolysaccharides in the biofilm formation and pathogenic interaction of Vibrio vulnificus
-
Kim HS, Park SJ, Lee KH. Role of NtrC-regulated exopolysaccharides in the biofilm formation and pathogenic interaction of Vibrio vulnificus. Mol Microbiol 2009, 74(2):436-453.
-
(2009)
Mol Microbiol
, vol.74
, Issue.2
, pp. 436-453
-
-
Kim, H.S.1
Park, S.J.2
Lee, K.H.3
-
184
-
-
73549110327
-
A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development
-
Petrova OE, Sauer K. A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development. PLoS Pathog 2009, 5(11):e1000668.
-
(2009)
PLoS Pathog
, vol.5
, Issue.11
-
-
Petrova, O.E.1
Sauer, K.2
-
185
-
-
65249127493
-
The two-component system QseEF and the membrane protein QseG link adrenergic and stress sensing to bacterial pathogenesis
-
Reading NC, Rasko DA, Torres AG, Sperandio V. The two-component system QseEF and the membrane protein QseG link adrenergic and stress sensing to bacterial pathogenesis. Proc Natl Acad Sci USA 2009, 106(14):5889-5894.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.14
, pp. 5889-5894
-
-
Reading, N.C.1
Rasko, D.A.2
Torres, A.G.3
Sperandio, V.4
-
186
-
-
0028820664
-
Cloning and phenotypic characterization of fleS and fleR, new response regulators of Pseudomonas aeruginosa which regulate motility and adhesion to mucin
-
Ritchings BW, Almira EC, Lory S, Ramphal R. Cloning and phenotypic characterization of fleS and fleR, new response regulators of Pseudomonas aeruginosa which regulate motility and adhesion to mucin. Infect Immun 1995, 63(12):4868-4876.
-
(1995)
Infect Immun
, vol.63
, Issue.12
, pp. 4868-4876
-
-
Ritchings, B.W.1
Almira, E.C.2
Lory, S.3
Ramphal, R.4
-
187
-
-
33751550309
-
An acetoin-regulated expression system of Bacillus subtilis
-
Silbersack J, Jürgen B, Hecker M, Schneidinger B, Schmuck R, Schweder T. An acetoin-regulated expression system of Bacillus subtilis. Appl Microbiol Biotechnol 2006, 73(4):895-903.
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, Issue.4
, pp. 895-903
-
-
Silbersack, J.1
Jürgen, B.2
Hecker, M.3
Schneidinger, B.4
Schmuck, R.5
Schweder, T.6
-
188
-
-
77950363329
-
Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR
-
Tucker NP, Ghosh T, Bush M, Zhang X, Dixon R. Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR. Nucleic Acids Res 2010, 38(4):1182-1194.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.4
, pp. 1182-1194
-
-
Tucker, N.P.1
Ghosh, T.2
Bush, M.3
Zhang, X.4
Dixon, R.5
-
189
-
-
0037406882
-
Propionyl coenzyme A is a common intermediate in the 1,2-propanediol and propionate catabolic pathways needed for expression of the prpBCDE operon during growth of Salmonella enterica on 1,2-propanediol
-
Palacios S, Starai VJ, Escalante-Semerena JC. Propionyl coenzyme A is a common intermediate in the 1,2-propanediol and propionate catabolic pathways needed for expression of the prpBCDE operon during growth of Salmonella enterica on 1,2-propanediol. J Bacteriol 2003, 185(9):2802-2810.
-
(2003)
J Bacteriol
, vol.185
, Issue.9
, pp. 2802-2810
-
-
Palacios, S.1
Starai, V.J.2
Escalante-Semerena, J.C.3
-
190
-
-
32044471535
-
Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains
-
Yoshida A, Nishimura T, Kawaguchi H, Inui M, Yukawa H. Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains. Appl Environ Microbiol 2005, 71(11):6762-6768.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.11
, pp. 6762-6768
-
-
Yoshida, A.1
Nishimura, T.2
Kawaguchi, H.3
Inui, M.4
Yukawa, H.5
-
191
-
-
75149184073
-
The role of the Fe-S cluster in the sensory domain of nitrogenase transcriptional activator VnfA from Azotobacter vinelandii
-
Nakajima H, Takatani N, Yoshimitsu K, Itoh M, Aono S, Takahashi Y, Watanabe Y. The role of the Fe-S cluster in the sensory domain of nitrogenase transcriptional activator VnfA from Azotobacter vinelandii. FEBS J 2010, 277(3):817-832.
-
(2010)
FEBS J
, vol.277
, Issue.3
, pp. 817-832
-
-
Nakajima, H.1
Takatani, N.2
Yoshimitsu, K.3
Itoh, M.4
Aono, S.5
Takahashi, Y.6
Watanabe, Y.7
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