Mapping σ54-RNA polymerase interactions at the -24 consensus promoter element

Journal of Biological Chemistry

Volumn 278, Issue 32, 2003, Pages 29728-29743

  Burrows, Patricia C ^a   Severinov, Konstantin ^b   Ishihama, Akira ^c   Buck, Martin ^a   Wigneshweraraj, Siva R ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b RUTGERS UNIVERSITY   (United States)

^c NIPPON INSTITUTE FOR BIOLOGICAL SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINETRIPHOSPHATE; CHEMICAL ACTIVATION; DNA; RNA;

PROMOTER ELEMENTS;

BIOCHEMISTRY;

ADENOSINE TRIPHOSPHATE; DNA; PROTEIN; RNA POLYMERASE; RNA POLYMERASE SIGMA 70; SIGMA FACTOR RPON; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; COMPLEX FORMATION; CONSENSUS SEQUENCE; DNA BINDING; DNA STRUCTURE; ENHANCER REGION; ENZYME BINDING; ENZYME STRUCTURE; KLEBSIELLA PNEUMONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN MODIFICATION; PROTEIN MOTIF; TRANSCRIPTION INITIATION;

AMINO ACID SEQUENCE; CYSTEINE; DEOXYRIBONUCLEASE I; DNA; DNA, SUPERHELICAL; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; EDETIC ACID; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; KLEBSIELLA PNEUMONIAE; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RNA POLYMERASE SIGMA 54; SEQUENCE HOMOLOGY, AMINO ACID; SIGMA FACTOR; SINORHIZOBIUM MELILOTI; TRANSCRIPTION, GENETIC;

ANIMALIA; KLEBSIELLA; KLEBSIELLA PNEUMONIAE; NEGIBACTERIA;

EID: 0043032654     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M303596200     Document Type: Article

References (56)

1. Paget, M. S., and Helmann, J. D. (2003) Genome Biol. 4, 203
2. Wosten, M. M. (1998) Microbiol. Rev. 22, 127-150
3. Buck, M., Gallegos, M. T., Studholme, D. J., Guo, Y., and Gralla, J. D. (2000) J. Bacteriol. 182, 4129-4136
4. Merrick, M. J. (1993) Mol. Microbiol. 10, 903-909
5. Xu, H., and Hoover, T. R. (2001) Curr. Opin. Microbiol. 4, 138-144
6. Barrios, H., Valderama, B., and Morett, E. (1999) Nucleic Acids Res. 27, 4305-4313
7. Wyman, C., Rombel, I., North, A. K., Bustamante, C., and Kustu, S. (1997) Science 275, 1658-1661
8. Rippe, K, Guthold, M., von Hippel, P. H., and Bustamante, C. (1997) J. Mol. Biol. 270, 125-138
9. Popham, D. L., Szeto, D., Keener, J., and Kustu, S. (1989) Science 243, 629-635
10. Zhang, X., Chaney, M., Wigneshweraraj, S. R., Schumacher, J., Bordes, P., Cannon W., and Buck, M. (2002) Mol. Microbiol. 45, 895-903
11. Cannon, W. V., Gallegos, M. T., and Buck, M. (2000) Nat. Struct. Biol. 7, 594-601
12. Wedel, A., and Kustu, S. (1995) Genes Dev. 9, 2042-2052
13. Murakami, K. S., and Darst, S. A. (2003) Curr. Opin. Struct. Biol. 13, 31-39
14. Murakami, K. S., Masuda, S., and Darst, S. A. (2002) Science, 296, 1280-1284
15. Lonetto, M., Gribskov, M., and Gross, C. A. (1992) J. Bacteriol. 174, 3483-3489
16. Wang, L., and Gralla, J. D. (2001) J. Biol. Chem. 276, 8979-8986
17. Wigneshweraraj, S. R., Chaney, M. K., Ishihama, A., and Buck, M. (2001) J. Mol. Biol. 308, 681-701
18. Chaney, M., and Buck, M. (1999) Mol. Microbiol. 33, 1200-1209
19. Merrick, M. J., and Chambers, S. (1992) J. Bacteriol. 174, 7221-7226
20. Taylor, M., Butler, R., Chambers, S., Casimiro, M., Badii, F., and Merrick, M. J. (1996) Mol. Microbiol. 22, 1045-1054
21. Kuznedelov, K., Minakhin, L., Niedziela-Majka, A., Dove, S. L., Rogulja, D., Nickels, B. E., Hochsehild, A., Heyduk, T., and Severinov, K. S. (2002) Science 295, 855-857
22. Mekler, V., Kortkhonjia, E., Mukhopadhyay, J., Knight, J., Revyakin, A., Kapanidis, A. N., Niu, W., Ebright, Y. W., Levy, R., and Ebright, R. H. (2002) Cell 108, 599-614
23. Callaci, S., Heyduk, E., and Heyduk, T. (1999) Mol. Cell 3, 229-238
24. Dombroski, A. J., Walter, W. A., and Gross, C. A. (1993) Genes Dev. 7, 2446-2555
25. Buck, M., and Cannon, W. (1992) Nature 358, 422-424
26. Morris, L., Cannon, W. V., Claverie-Martin, F., Austin, S., and Buck, M. (1994) J. Biol. Chem. 269, 11563-11571
27. Chaney, M., Grande, R., Wigneshweraraj, S. R., Cannon, W., Casaz, P., Gallegos, M. T., Schumacher, J., Jones, S., Elderkin, S., Dago, A. E., Morett, E., and Buck, M. (2001) Genes Dev. 15, 2282-2294
28. Ishihama, A. (2000) Chem. Commun. 13, 1091-1094
29. Wigneshweraraj, S. R., Fujita, N., Ishihama, A., and Buck, M. (2000) EMBO J., 19, 3038-3048
30. Bordes, P., Wigneshweraraj, S. R., Schumacher, J., Zhang, X., Chaney, M., and Buck, M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 2278-2283
31. Wigneshweraraj, S. R, Kuznedelov, K., Severinov, K., and Buck, M. (2003) J. Biol. Chem. 278, 3455-3465
32. Cannon, W., Gallegos, M. T., Casaz, P., and Buck, M. (1999) Genes Dev. 13, 357-370
33. Greiner, D. P., Miyake, R., Moran, J. K., Jones, A. D., Negishi, T., Ishihama, A., and Meares, C. F. (1997) Bioconjugate Chem. 8, 44-48
34. Casaz, P., Gallegos, M. T., and Buck, M. (1999) J. Mol. Biol. 292, 229-239
35. Guo, Y., Wang, L., and Gralla, J. D. (1999) EMBO J. 18, 3736-3745
36. Guo, Y., Lee, C. M., and Gralla, J. D. (2000) Genes Dev. 14, 2242-2255
37. Gallegos, M. T., and Buck, M. (2000) J. Biol. Chem. 297, 849-859
38. Gallegos, M. T., and Buck, M. (1999) J. Mol. Biol. 288, 539-553
39. Cannon, W., Bordes, P., Wigneshweraraj, S. R., and Buck, M. (2003) J. Biol. Chem. 278, 19815-19825
40. Cannon, W., Gallegos, M. T., and Buck, M. (2001) J. Biol. Chem. 276, 386-394
41. Casaz, P., and Buck, M. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 12145-12150
42. Casaz, P., and Buck, M. (1999) J. Mol. Biol. 285, 507-514
43. Cannon, W., Wigneshweraraj, S. R., and Buck, M. (2002) Nucleic Acids Res. 30, 886-893
44. Cannon, W., Austin, S., Moore, M., and Buck, M. (1995) Nucleic Acids Res. 23, 351-356
45. Wong, C., Tintut, Y., and Gralla, J. (1994) J. Mol. Biol. 236, 81-90
46. Sasse-Dwight, S., and Gralla, J. D. (1990) Cell. 62, 945-954
47. Murakami, K. S., Masuda, S., Campbell, E. A., Muzzin, O., and Darst, S. A. (2002) Science, 296, 1285-1290
48. Wang, L., Guo, Y., and Gralla, J. D. (1999) J. Bacteriol. 181, 7558-7765
49. Cannon, W., Claverie-Martin, F., Austin, S., and Buck, M. (1993) Mol. Microbiol. 8, 287-298
50. Tintut, Y., Wang, J. T., and Gralla, J. D. (1995) J. Biol. Chem. 270, 24392-24398
51. Bondarenko, V., Liu, Y., Ninfa, A., and Studitsky, V. M. (2002) Nucleic Acids Res. 30, 636-642
52. Mukhopadhyay, J., Kapanidis, A. N., Mekler, V., Kortkhonkjia, E., and Ebright, R. H. (2001) Cell 106, 453-463
53. Owens, J. T., Chmura, A. J., Murakami, K, Fujita, N., Ishihama, A., and Meares, C. F. (1998) Biochemistry 37, 7670-7675
54. Campbell, E. A., Muzzin, O., Chlenov, M., Sun, J. L., Olson, C. A., Weinmann, O., Trester-Zedlitz, M. L., and Darst, S. A. (2002) Mol. Cell. 9, 527-539
55. Wigneshweraraj, S. R., Ishihama, A., and Buck, M. (2001) Nucleic Acids Res. 29, 1163-1174
56. Cannon, W., Claverie-Martin, F., Austin, S., and Buck, M. (1994) Mol. Microbiol. 11, 227-236