-
1
-
-
0029819318
-
The root of the universal tree and the origin eukaryotes based on elongation factor phylogeny
-
S.L. Baldauf, J.D. Palmer, and W.F. Doolittle The root of the universal tree and the origin eukaryotes based on elongation factor phylogeny Proc. Natl Acad. Sci. USA. 93 1996 7749 7754
-
(1996)
Proc. Natl Acad. Sci. USA.
, vol.93
, pp. 7749-7754
-
-
Baldauf, S.L.1
Palmer, J.D.2
Doolittle, W.F.3
-
2
-
-
0033948149
-
Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences
-
M. Bocchetta, S. Gribaldo, A. Sanangelantoni, and P. Cammarano Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences J. Mol. Evol. 50 2000 366 380
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 366-380
-
-
Bocchetta, M.1
Gribaldo, S.2
Sanangelantoni, A.3
Cammarano, P.4
-
3
-
-
0037118037
-
A non-hyperthermophilic ancestor for bacteria
-
C. Brochier, and H. Philippe A non-hyperthermophilic ancestor for bacteria Nature 417 2002 244
-
(2002)
Nature
, vol.417
, pp. 244
-
-
Brochier, C.1
Philippe, H.2
-
4
-
-
0036137155
-
Eubacterial phylogeny based on translation apparatus proteins
-
C. Brochier, E. Bapteste, and H. Philippe Eubacterial phylogeny based on translation apparatus proteins Trends Genetics 18 2002 1 5
-
(2002)
Trends Genetics
, vol.18
, pp. 1-5
-
-
Brochier, C.1
Bapteste, E.2
Philippe, H.3
-
5
-
-
17444452078
-
Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast
-
F.S. Brinkman, J.L. Blanchard, A. Cherkasov, Y. Av-Gay, R.C. Brunham, R.C. Fernandez, B.B. Finlay, S.P. Otto, B.F. Ouellette, P.J. Keeling, A.M. Rose, R.E. Hancock, S.J. Jones, and H. Greberg Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast Genome Res. 12 2002 1159 1167
-
(2002)
Genome Res.
, vol.12
, pp. 1159-1167
-
-
Brinkman, F.S.1
Blanchard, J.L.2
Cherkasov, A.3
Av-Gay, Y.4
Brunham, R.C.5
Fernandez, R.C.6
Finlay, B.B.7
Otto, S.P.8
Ouellette, B.F.9
Keeling, P.J.10
Rose, A.M.11
Hancock, R.E.12
Jones, S.J.13
Greberg, H.14
-
7
-
-
0032169271
-
Conservation of gene order: A fingerprint of proteins that physically interact
-
T. Dandekar, B. Snel, M. Huynen, and P. Bork Conservation of gene order: a fingerprint of proteins that physically interact Trends Biochem. Sci. 23 1998 324 328
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
8
-
-
2542452389
-
Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales
-
E. Griffiths, and R.S. Gupta Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales Int. Microbiol. 7 2004 41 52
-
(2004)
Int. Microbiol.
, vol.7
, pp. 41-52
-
-
Griffiths, E.1
Gupta, R.S.2
-
9
-
-
0031658829
-
Characterization of the group 1 and group 2 sigma factors of the green sulfur bacterium Chlorobium tepidum and the green non-sulfur bacterium Chloroflexus aurantiacus
-
T.M. Gruber, and D.A. Bryant Characterization of the group 1 and group 2 sigma factors of the green sulfur bacterium Chlorobium tepidum and the green non-sulfur bacterium Chloroflexus aurantiacus Arch. Microbiol. 170 1998 285 296
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 285-296
-
-
Gruber, T.M.1
Bryant, D.A.2
-
10
-
-
0031794743
-
Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria and eukaryotes
-
R.S. Gupta Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria and eukaryotes Microbiol. Mol. Biol. Rev. 62 1998 1435 1491
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 1435-1491
-
-
Gupta, R.S.1
-
11
-
-
0033823160
-
The phylogeny of proteobacteria: Relationships to other eubacterial phyla and eukaryotes
-
R.S. Gupta The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes FEMS Microbiol. Rev. 24 2000 367 402
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 367-402
-
-
Gupta, R.S.1
-
12
-
-
0042861279
-
Evolutionary relationships among photosynthetic bacteria
-
R.S. Gupta Evolutionary relationships among photosynthetic bacteria Photosynthesis Res. 76 2003 173 183
-
(2003)
Photosynthesis Res.
, vol.76
, pp. 173-183
-
-
Gupta, R.S.1
-
13
-
-
2942576138
-
Evolution of bacterial RNA polymerase: Implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer
-
L.M. Iyer, E.V. Koonin, and L. Aravind Evolution of bacterial RNA polymerase: implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer Gene 335 2004 73 88
-
(2004)
Gene
, vol.335
, pp. 73-88
-
-
Iyer, L.M.1
Koonin, E.V.2
Aravind, L.3
-
14
-
-
0032955637
-
RNA polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria
-
H-P. Klenk, T-D. Meier, P. Durovic, V. Schwass, F. Lottspeich, P.P. Dennis, and W. Zilling RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria J. Mol. Evol. 48 1999 528 541
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 528-541
-
-
Klenk, H.-P.1
Meier, T.-D.2
Durovic, P.3
Schwass, V.4
Lottspeich, F.5
Dennis, P.P.6
Zilling, W.7
-
15
-
-
0036499057
-
SHOT: A web server for the construction of genome phylogenies
-
J.O. Korbel, B. Snel, M.A. Huynen, and P. Bork SHOT: a web server for the construction of genome phylogenies Trends Genetics 18 2002 158 162
-
(2002)
Trends Genetics
, vol.18
, pp. 158-162
-
-
Korbel, J.O.1
Snel, B.2
Huynen, M.A.3
Bork, P.4
-
16
-
-
0035824060
-
Gene arrangements and phylogeny in the class Proteobacteria
-
T. Kunisawa Gene arrangements and phylogeny in the class Proteobacteria J. Theor. Biol. 213 2001 9 19
-
(2001)
J. Theor. Biol.
, vol.213
, pp. 9-19
-
-
Kunisawa, T.1
-
17
-
-
0037763690
-
Gene arrangements and branching orders of Gram-positive bacteria
-
T. Kunisawa Gene arrangements and branching orders of Gram-positive bacteria J. Theor. Biol. 222 2003 495 503
-
(2003)
J. Theor. Biol.
, vol.222
, pp. 495-503
-
-
Kunisawa, T.1
-
18
-
-
13844253737
-
Branching orders among α-proteobacteria and mitochondria inferred from gene transpositions
-
T. Kunisawa Branching orders among α-proteobacteria and mitochondria inferred from gene transpositions J. Theor. Biol. 234 2005 1 5
-
(2005)
J. Theor. Biol.
, vol.234
, pp. 1-5
-
-
Kunisawa, T.1
-
19
-
-
33644881802
-
A gene order database of plastid genomes
-
K. Kurihara, and T. Kunisawa A gene order database of plastid genomes Data Sci. J. 3 2004 60 79
-
(2004)
Data Sci. J.
, vol.3
, pp. 60-79
-
-
Kurihara, K.1
Kunisawa, T.2
-
20
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
T.M. Lowe, and S.R. Eddy tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res. 25 1997 955 964
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
21
-
-
0002803581
-
Overview: A phylogenetic backbone and taxonomic framework for procaryotic systematics
-
D.R. Boone R.W. Castenholtz Springer New York
-
W. Ludwig, and H. Klenk Overview: A phylogenetic backbone and taxonomic framework for procaryotic systematics D.R. Boone R.W. Castenholtz Bergey's Mannual of Systematic Bacteriology vol. 1 2001 Springer New York 49 65
-
(2001)
Bergey's Mannual of Systematic Bacteriology
, vol.1
, pp. 49-65
-
-
Ludwig, W.1
Klenk, H.2
-
22
-
-
0023989064
-
Improved tools for biological sequence comparison
-
W.R. Pearson, and D.J. Lipman Improved tools for biological sequence comparison Proc. Natl Acad. Sci. USA 85 1988 2444 2448
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
23
-
-
0030660581
-
A genomic perspective on protein families
-
R.L. Tatusov, E.V. Koonin, and D. Lipman A genomic perspective on protein families Science 278 1997 631 637
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.3
-
24
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
R.L. Tatusov, D.A. Natale, I.V. Garkavtsev, T.A. Tatusova, U.T. Shankavaram, B.S. Rao, B. Kiryutin, M.Y. Galperin, N.D. Fedorova, and E.V. Koonin The COG database: new developments in phylogenetic classification of proteins from complete genomes Nucleic Acid Res. 29 2001 22 28
-
(2001)
Nucleic Acid Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
25
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Y.I. Wolf, I.B. Rogozin, N.V. Grishin, R.L. Tatusov, and E.V. Koonin Genome trees constructed using five different approaches suggest new major bacterial clades BMC Evol. Biol. 1 2001 8
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
|