Genome update: Sigma factors in 240 bacterial genomes

Microbiology

Volumn 151, Issue 10, 2005, Pages 3147-3150

  Kill, Kristoffer ^a   Binnewies, Tim T ^a   Sicheritz Pontén, Thomas ^a   Willenbrock, Hanni ^a   Hallin, Peter F ^a   Wassenaar, Trudy M ^a,b   Ussery, David W ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b Molecular Microbiology and Genomics Consultants   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIINFECTIVE AGENT;

ANTIBIOTIC RESISTANCE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL INFECTION; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; CORYNEBACTERIUM; DICTYOSTELIUM DISCOIDEUM; EUKARYOTE; GENE SEQUENCE; HAEMOPHILUS INFLUENZAE; HUMAN; IMMUNE DEFICIENCY; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROKARYOTE; PSEUDOMONAS FLUORESCENS; RICKETTSIA FELIS; SULFOLOBUS ACIDOCALDARIUS; THEILERIA ANNULATA; TOXOPLASMA GONDII; XANTHOMONAS CAMPESTRIS;

EUKARYOTIC CELLS; GENOME; GENOME, ARCHAEAL; GENOME, BACTERIAL; GENOMICS; HUMANS; PROKARYOTIC CELLS; SIGMA FACTOR;

BACTERIA (MICROORGANISMS); CORYNEBACTERIUM; DICTYOSTELIUM DISCOIDEUM; EUKARYOTA; HAEMOPHILUS INFLUENZAE; PROKARYOTA; PSEUDOMONAS FLUORESCENS; RICKETTSIA FELIS; SULFOLOBUS ACIDOCALDARIUS; THEILERIA ANNULATA; TOXOPLASMA GONDII; XANTHOMONAS CAMPESTRIS;

EID: 27144440933     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.28339-0     Document Type: Note

References (16)

1. Bayliss, C. D., Field, D. & Moxon, E. R. (2001). The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis. J Clin Invest 107, 657-662.
2. Chen, L., Brugger, K., Skovgaard, M. & 8 other authors (2005). The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol 187, 4992-4999.
3. da Silva, A. C., Ferro, J. A., Reinach, F. C. & 59 other authors (2002). Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 417, 459-463.
4. Eichinger, L., Pachebat, J. A., Glockner, G. & 94 other authors (2005). The genome of the social amoeba Dictyostelium discoideum. Nature 435, 43-57.
5. Fleischmann, R. D., Adams, M. D., White, O. & 37 other authors (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
6. Gardner, M. J., Bishop, R., Shah, T. & 41 other authors (2005). Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science 309, 134-137.
7. Harrison, A., Dyer, D. W., Gillaspy, A. & 10 other authors (2005). Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. J Bacteriol 187, 4627-4636.
8. Khan, A., Taylor, S., Su, C. & 14 other authors (2005). Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii: Nucleic Acids Res 33, 2980-2992.
9. Marquez, F. J., Muniain, M. A., Perez, J. M. & Pachon, J. (2002). Presence of Rickettsia felis in the cat flea from southwestern Europe. Emerg Infect Dis 8, 89-91.
10. Ogata, H., Renesto, P., Audic, S., Robert, C., Blanc, G., Fournier, P. E., Parinello, H., Claverie, J. M. & Raoult, D. (2005). The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol 3, e248.
11. O'Malley, M. A., Bostanci, A. & Calvert J. (2005). Whole-genome patenting. Nat Rev Genet 6, 502-506.
12. Pain, A., Renauld, H., Berriman, M. & 47 other authors (2005). Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science 309, 131-133.
13. Paulsen, I. T., Press, C. M., Ravel, J. & 26 other authors (2005). Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol 23, 873-878.
14. Qian, W., Jia, Y., Ren, S. X. & 25 other authors (2005). Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res 15, 757-767.
15. Skovgaard, M., Jensen, L. J., Brunak, S., Ussery, D. & Krogh, A. (2001). On the total number of genes and their length distribution in complete microbial genomes. Trends Genet 17, 425-428.
16. Tauch, A., Kaiser, O., Hain, T. & 13 other authors (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. J Bacteriol 187, 4671-4682.