메뉴 건너뛰기




Volumn 28, Issue 3, 2011, Pages 1241-1254

Unexpected repertoire of metazoan transcription factors in the unicellular holozoan capsaspora owczarzaki

Author keywords

brachyury; choanoflagellates; homeodomain; multicellularity; origin Metazoa; T box

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; HOMEODOMAIN PROTEIN; T BOX TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR RUNX;

EID: 79952143437     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq309     Document Type: Article
Times cited : (163)

References (94)
  • 1
    • 39349100667 scopus 로고    scopus 로고
    • The premetazoan ancestry of cadherins
    • DOI 10.1126/science.1151084
    • Abedin M, King N. 2008. The premetazoan ancestry of cadherins. Science 319:946-948. (Pubitemid 351263763)
    • (2008) Science , vol.319 , Issue.5865 , pp. 946-948
    • Abedin, M.1    King, N.2
  • 2
    • 0141886146 scopus 로고    scopus 로고
    • Isolation and characterization of two T-box genes from sponges, the phylogenetically oldest metazoan taxon
    • DOI 10.1007/s00427-003-0345-5
    • Adell T, Grebenjuk VA, Wiens M, Muller WE. 2003. Isolation and characterization of two T-box genes from sponges, the phylogenetically oldest metazoan taxon. Dev Genes Evol. 213:421-434. (Pubitemid 37236173)
    • (2003) Development Genes and Evolution , vol.213 , Issue.9 , pp. 421-434
    • Adell, T.1    Grebenjuk, V.A.2    Wiens, M.3    Muller, W.E.G.4
  • 3
    • 23144446793 scopus 로고    scopus 로고
    • Expression pattern of the Brachyury and Tbx2 homologues from the sponge Suberites domuncula
    • DOI 10.1042/BC20040135
    • Adell T, Muller WE. 2005. Expression pattern of the Brachyury and Tbx2 homologues from the sponge Suberites domuncula. Biol Cell. 97:641-650. (Pubitemid 41079036)
    • (2005) Biology of the Cell , vol.97 , Issue.8 , pp. 641-650
    • Adell, T.1    Muller, W.E.G.2
  • 4
    • 0030903691 scopus 로고    scopus 로고
    • Redox regulation of the DNA binding activity in transcription factor PEBP2 the roles of two conserved cysteine residues: The roles of two conserved cysteine residues
    • DOI 10.1074/jbc.272.23.14497
    • Akamatsu Y, Ohno T, Hirota K, Kagoshima H, Yodoi J, Shigesada K. 1997. Redox regulation of the DNA binding activity in transcription factor PEBP2. The roles of two conserved cysteine residues. J Biol Chem. 272:14497-14500. (Pubitemid 27251706)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.23 , pp. 14497-14500
    • Akamatsu, Y.1    Ohno, T.2    Hirota, K.3    Kagoshima, H.4    Yodoi, J.5    Shigesada, K.6
  • 7
    • 38349028678 scopus 로고    scopus 로고
    • Divergent functions of two ancient Hydra Brachyury paralogues suggest specific roles for their C-terminal domains in tissue fate induction
    • Bielen H, Oberleitner S, Marcellini S, Gee L, Lemaire P, Bode HR, Rupp R, Technau U. 2007. Divergent functions of two ancient Hydra Brachyury paralogues suggest specific roles for their C-terminal domains in tissue fate induction. Development 134:4187-4197.
    • (2007) Development , vol.134 , pp. 4187-4197
    • Bielen, H.1    Oberleitner, S.2    Marcellini, S.3    Gee, L.4    Lemaire, P.5    Bode, H.R.6    Rupp, R.7    Technau, U.8
  • 8
    • 0026005062 scopus 로고
    • Developmental function of Elf-1: An essential transcription factor during embryogenesis in Drosophila
    • Bray SJ, Kafatos FC 1991. Developmental function of Elf-1: an essential transcription factor during embryogenesis in Drosophila. Genes Dev. 5:1672-1683. (Pubitemid 21906071)
    • (1991) Genes and Development , vol.5 , Issue.9 , pp. 1672-1683
    • Bray, S.J.1    Kafatos, F.C.2
  • 9
    • 0036251154 scopus 로고    scopus 로고
    • Stat proteins and oncogenesis
    • DOI 10.1172/JCI200215617
    • Bromberg J. 2002. Stat proteins and oncogenesis. J Clin Invest. 109:1139-1142. (Pubitemid 34496590)
    • (2002) Journal of Clinical Investigation , vol.109 , Issue.9 , pp. 1139-1142
    • Bromberg, J.1
  • 10
    • 70450242802 scopus 로고    scopus 로고
    • Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta
    • Brown MW, Spiegel FW, Silberman JD. 2009. Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta. Mol Biol Evol. 26:2699-2709.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2699-2709
    • Brown, M.W.1    Spiegel, F.W.2    Silberman, J.D.3
  • 11
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • DOI 10.1006/jmbi.1997.0951
    • Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268:78-94. (Pubitemid 27192680)
    • (1997) Journal of Molecular Biology , vol.268 , Issue.1 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 12
    • 46949092431 scopus 로고    scopus 로고
    • Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes
    • DOI 10.1098/rsbl.2008.0224, PII J355M22278421402
    • Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008. Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol Lett. 4:366-369. (Pubitemid 351961461)
    • (2008) Biology Letters , vol.4 , Issue.4 , pp. 366-369
    • Burki, F.1    Shalchian-Tabrizi, K.2    Pawlowski, J.3
  • 13
    • 0038440763 scopus 로고    scopus 로고
    • Runx transcription factors and the developmental balance between cell proliferation and differentiation
    • DOI 10.1016/S1065-6995(03)00018-0
    • Coffman JA 2003. Runx transcription factors and the developmental balance between cell proliferation and differentiation. Cell Biol Int. 27:315-324. (Pubitemid 36638332)
    • (2003) Cell Biology International , vol.27 , Issue.4 , pp. 315-324
    • Coffman, J.A.1
  • 15
    • 77950535315 scopus 로고    scopus 로고
    • Evolution of the MAGUK protein gene family in premetazoan lineages
    • de Mendoza A, Suga H, Ruiz-Trillo I. 2010. Evolution of the MAGUK protein gene family in premetazoan lineages. BMC Evol Biol. 10:93.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 93
    • De Mendoza, A.1    Suga, H.2    Ruiz-Trillo, I.3
  • 17
    • 33748049771 scopus 로고    scopus 로고
    • Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks
    • DOI 10.1093/molbev/msl022
    • Deppmann CD, Alvania RS, Taparowsky EJ. 2006. Cross-species annotation of basic leucine zipper factor interactions: insight into the evolution of closed interaction networks. Mol Biol Evol. 23:1480-1492. (Pubitemid 44297407)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.8 , pp. 1480-1492
    • Deppmann, C.D.1    Alvania, R.S.2    Taparowsky, E.J.3
  • 18
    • 34248358127 scopus 로고    scopus 로고
    • Homeodomain proteins belong to the ancestral molecular toolkit of eukaryotes
    • DOI 10.1111/j.1525-142X.2007.00153.x
    • Derelle R, Lopez P, Guyader HL, Manuel M. 2007. Homeodomain proteins belong to the ancestral molecular toolkit of eukaryotes. Evol Dev. 9:212-219. (Pubitemid 46733823)
    • (2007) Evolution and Development , vol.9 , Issue.3 , pp. 212-219
    • Derelle, R.1    Lopez, P.2    Guyader, H.L.3    Manuel, M.4
  • 19
    • 0030988939 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae MADS-box transcription factor Rlm1 is a target for the Mpk1 mitogen-activated protein kinase pathway
    • Dodou E, Treisman R. 1997. The Saccharomyces cerevisiae MADS-box transcription factor Rlm1 is a target for the Mpk1 mitogen-activated protein kinase pathway. Mol Cell Biol. 17:1848-1859. (Pubitemid 27133270)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.4 , pp. 1848-1859
    • Dodou, E.1    Treisman, R.2
  • 20
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR. 1998. Profile hidden Markov models. Bioinformatics 14:755-763. (Pubitemid 28552108)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 21
    • 46349100300 scopus 로고    scopus 로고
    • Mechanisms of regulatory diversity within the p53 transcriptional network
    • DOI 10.1038/onc.2008.37, PII ONC200837
    • Espinosa JM. 2008. Mechanisms of regulatory diversity within the p53 transcriptional network Oncogene 27:4013-4023. (Pubitemid 351931985)
    • (2008) Oncogene , vol.27 , Issue.29 , pp. 4013-4023
    • Espinosa, J.M.1
  • 24
    • 0033785699 scopus 로고    scopus 로고
    • Structural basis for the diversity of DNA recognition by bZIP transcription factors
    • Fujii Y, Shimizu T, Toda T, Yanagida M, Hakoshima T. 2000. Structural basis for the diversity of DNA recognition by bZIP transcription factors. Nat Struct Biol. 7:889-893.
    • (2000) Nat. Struct Biol. , vol.7 , pp. 889-893
    • Fujii, Y.1    Shimizu, T.2    Toda, T.3    Yanagida, M.4    Hakoshima, T.5
  • 25
    • 0033048708 scopus 로고    scopus 로고
    • 50 Paired-like genes founded the Paired class
    • DOI 10.1007/s004270050243
    • Galliot B, de Vargas C, Miller D. 1999. Evolution of homeobox genes: Q50 paired-like genes founded the paired class. Dev Genes Evol. 209:186-197. (Pubitemid 29116596)
    • (1999) Development Genes and Evolution , vol.209 , Issue.3 , pp. 186-197
    • Galliot, B.1    De Vargas, C.2    Miller, D.3
  • 26
    • 38349195146 scopus 로고    scopus 로고
    • The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: Insights on the evolutionary origin of the Rel homology domain
    • Gauthier M, Degnan BM. 2008. The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain. Dev Genes Evol. 218:23-32.
    • (2008) Dev. Genes Evol. , vol.218 , pp. 23-32
    • Gauthier, M.1    Degnan, B.M.2
  • 28
    • 0034130329 scopus 로고    scopus 로고
    • p53 recruitment of CREB binding protein mediated through phosphorylated CREB: A novel pathway of tumor suppressor regulation
    • DOI 10.1128/MCB.20.13.4849-4858.2000
    • Giebler HA, Lemasson I, Nyborg JK. 2000. p53 recruitment of CREB binding protein mediated through phosphorylated CREB: a novel pathway of tumor suppressor regulation. Mol Cell Biol. 20:4849-4858. (Pubitemid 30396131)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.13 , pp. 4849-4858
    • Giebler, H.A.1    Lemasson, I.2    Nyborg, J.K.3
  • 30
    • 0034234237 scopus 로고    scopus 로고
    • CBP/p300 in cell growth, transformation, and development
    • Goodman RH, Smolik S. 2000. CBP/p300 in cell growth, transformation, and development. Genes Dev. 14:1553-1577. (Pubitemid 30460905)
    • (2000) Genes and Development , vol.14 , Issue.13 , pp. 1553-1577
    • Goodman, R.H.1    Smolik, S.2
  • 31
    • 0034824495 scopus 로고    scopus 로고
    • p300/CBP/p53 interaction and regulation of the p53 response
    • DOI 10.1046/j.1432-1327.2001.02226.x
    • Grossman SR 2001. p300/CBP/p53 interaction and regulation of the p53 response. Eur J Biochem. 268:2773-2778. (Pubitemid 32862958)
    • (2001) European Journal of Biochemistry , vol.268 , Issue.10 , pp. 2773-2778
    • Grossman, S.R.1
  • 32
    • 4444376712 scopus 로고    scopus 로고
    • Signaling to NF-kappaB
    • Hayden MS, Ghosh S. 2004. Signaling to NF-kappaB. Genes Dev. 18:2195-2224.
    • (2004) Genes Dev. , vol.18 , pp. 2195-2224
    • Hayden, M.S.1    Ghosh, S.2
  • 33
    • 0028678794 scopus 로고
    • Transcription factors. 1: BZIP proteins
    • Hurst HC 1994. Transcription factors. 1: bZIP proteins. Protein Profile. 1:123-168.
    • (1994) Protein Profile , vol.1 , pp. 123-168
    • Hurst, H.C.1
  • 34
    • 3142720638 scopus 로고    scopus 로고
    • Transforming growth factor-β stimulates p300-dependent RUNX3 acetylation, which inhibits ubiquitination-mediated degradation
    • DOI 10.1074/jbc.M313120200
    • Jin YH, Jeon EJ, Li QL, Lee YH, Choi JK, Kim WJ, Lee KY, Bae SC 2004. Transforming growth factor-beta stimulates p300-dependent RUNX3 acetylation, which inhibits ubiquitination-mediated degradation. J Biol Chem. 279:29409-29417. (Pubitemid 38915820)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.28 , pp. 29409-29417
    • Jin, Y.-H.1    Jeon, E.-J.2    Li, Q.-L.3    Lee, Y.H.4    Choi, J.-K.5    Kim, W.-J.6    Lee, K.-Y.7    Bae, S.-C.8
  • 35
    • 4043141372 scopus 로고    scopus 로고
    • An overview of the basic helix-loop-helix proteins
    • Jones S. 2004. An overview of the basic helix-loop-helix proteins. Genome Biol. 5:226.
    • (2004) Genome Biol. , vol.5 , pp. 226
    • Jones, S.1
  • 36
    • 33644792802 scopus 로고    scopus 로고
    • Improvement in the accuracy of multiple sequence alignment program MAFFT
    • Katoh K, Kuma K, Miyata T, Toh H. 2005. Improvement in the accuracy of multiple sequence alignment program MAFFT. Genome Inform. 16:22-33.
    • (2005) Genome Inform , vol.16 , pp. 22-33
    • Katoh, K.1    Kuma, K.2    Miyata, T.3    Toh, H.4
  • 37
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • DOI 10.1093/nar/gki198
    • Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511-518. (Pubitemid 40360980)
    • (2005) Nucleic Acids Research , vol.33 , Issue.2 , pp. 511-518
    • Katoh, K.1    Kuma, K.-I.2    Toh, H.3    Miyata, T.4
  • 42
    • 49349085454 scopus 로고    scopus 로고
    • Dictyostelium kinase DPYK3 negatively regulates STATc signaling in cell fate decision
    • Lee NSM, Rodriguez M, Kim B, Kim L 2008. Dictyostelium kinase DPYK3 negatively regulates STATc signaling in cell fate decision. Dev Growth Differ. 50:607-613.
    • (2008) Dev. Growth Differ , vol.50 , pp. 607-613
    • Lee, N.S.M.1    Rodriguez, M.2    Kim, B.3    Kim, L.4
  • 43
    • 0036731485 scopus 로고    scopus 로고
    • STATs: Transcriptional control and biological impact
    • DOI 10.1038/nrm909
    • Levy DE, Darnell JEJ. 2002. Stats: transcriptional control and biological impact. Nat Rev Mol Cell Biol. 3:651-662. (Pubitemid 34987786)
    • (2002) Nature Reviews Molecular Cell Biology , vol.3 , Issue.9 , pp. 651-662
    • Levy, D.E.1    Darnell Jr., J.E.2
  • 44
    • 72249109366 scopus 로고    scopus 로고
    • Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support
    • Liu Y, Steenkamp ET, Brinkmann H, Forget L, Philippe H, Lang BF. 2009. Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support. BMC Evol Biol. 9:272.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 272
    • Liu, Y.1    Steenkamp, E.T.2    Brinkmann, H.3    Forget, L.4    Philippe, H.5    Lang, B.F.6
  • 45
    • 38049134119 scopus 로고    scopus 로고
    • Churchill regulates cell movement and mesoderm specification by repressing Nodal signaling
    • Londin ER, Mentzer L, Sirotkin HI. 2007. Churchill regulates cell movement and mesoderm specification by repressing Nodal signaling. BMC Dev Biol. 7:120.
    • (2007) BMC Dev. Biol. , vol.7 , pp. 120
    • Londin, E.R.1    Mentzer, L.2    Sirotkin, H.I.3
  • 46
    • 20644466433 scopus 로고    scopus 로고
    • NFAT proteins: Key regulators of T-cell development and function
    • DOI 10.1038/nri1632
    • Macian F. 2005. NFAT proteins: key regulators of T-cell development and function. Nat Rev Immunol. 5:472-484. (Pubitemid 40835035)
    • (2005) Nature Reviews Immunology , vol.5 , Issue.6 , pp. 472-484
    • Macian, F.1
  • 47
    • 41249084399 scopus 로고    scopus 로고
    • Two of four alternatively spliced isoforms of RUNX2 control osteocalcin gene expression in human osteoblast cells
    • Makita N, Suzuki M, Asami S, Takahata R, Kohzaki D, Kobayashi S, Hakamazuka T, Hozumi N. 2008. Two of four alternatively spliced isoforms of RUNX2 control osteocalcin gene expression in human osteoblast cells. Gene 413:8-17.
    • (2008) Gene , vol.413 , pp. 8-17
    • Makita, N.1    Suzuki, M.2    Asami, S.3    Takahata, R.4    Kohzaki, D.5    Kobayashi, S.6    Hakamazuka, T.7    Hozumi, N.8
  • 48
    • 60549083676 scopus 로고    scopus 로고
    • Role of basic leucine zipper proteins in transcriptional regulation of the steroidogenic acute regulatory protein gene
    • Manna PR, Dyson MT, Stocco DM. 2009. Role of basic leucine zipper proteins in transcriptional regulation of the steroidogenic acute regulatory protein gene. Mol Cell Endocrinol. 302:1-11.
    • (2009) Mol. Cell. Endocrinol. , vol.302 , pp. 1-11
    • Manna, P.R.1    Dyson, M.T.2    Stocco, D.M.3
  • 50
    • 0042062219 scopus 로고    scopus 로고
    • Evolution of Brachyury proteins: Identification of a novel regulatory domain conserved within Bilateria
    • DOI 10.1016/S0012-1606(03)00244-6
    • Marcellini S, Technau U, Smith JC, Lemaire P. 2003. Evolution of Brachyury proteins: identification of a novel regulatory domain conserved within Bilateria. Dev Biol. 260:352-361. (Pubitemid 36960084)
    • (2003) Developmental Biology , vol.260 , Issue.2 , pp. 352-361
    • Marcellini, S.1    Technau, U.2    Smith, J.C.3    Lemaire, P.4
  • 53
    • 70450265540 scopus 로고    scopus 로고
    • A comprehensive classification and evolutionary analysis of plant homeobox genes
    • Mukherjee K, Brocchieri L, Burglin TR 2009. A comprehensive classification and evolutionary analysis of plant homeobox genes. Mol Biol Evol. 26:2775-2794.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2775-2794
    • Mukherjee, K.1    Brocchieri, L.2    Burglin, T.R.3
  • 54
    • 34548530884 scopus 로고    scopus 로고
    • Comprehensive analysis of animal TALE homeobox genes: New conserved motifs and cases of accelerated evolution
    • DOI 10.1007/s00239-006-0023-0
    • Mukherjee K, Burglin TR 2007. Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution. J Mol Evol. 65:137-153. (Pubitemid 47383775)
    • (2007) Journal of Molecular Evolution , vol.65 , Issue.2 , pp. 137-153
    • Mukherjee, K.1    Burglin, T.R.2
  • 55
    • 0039706410 scopus 로고    scopus 로고
    • Crystallographic structure of the T domain-DNA complex of the Brachyury transcription factor
    • DOI 10.1038/39929
    • Muller CW, Herrmann BG. 1997. Crystallographic structure of the T domain-DNA complex of the Brachyury transcription factor. Nature 389:884-888. (Pubitemid 27462986)
    • (1997) Nature , vol.389 , Issue.6653 , pp. 884-888
    • Muller, C.W.1    Herrmann, B.G.2
  • 56
    • 37049036363 scopus 로고    scopus 로고
    • Early diversification and complex evolutionary history of the p53 tumor suppressor gene family
    • DOI 10.1007/s00427-007-0185-9
    • Nedelcu AM, Tan C 2007. Early diversification and complex evolutionary history of the p53 tumor suppressor gene family. Dev Genes Evol. 217:801-806. (Pubitemid 350245965)
    • (2007) Development Genes and Evolution , vol.217 , Issue.11-12 , pp. 801-806
    • Nedelcu, A.M.1    Tan, C.2
  • 57
    • 0030614504 scopus 로고    scopus 로고
    • Regulation of NF-κB by cyclin-dependent kinases associated with the p300 coactivator
    • DOI 10.1126/science.275.5299.523
    • Perkins ND, Felzien LK, Betts JC, Leung K, Beach DH, Nabel GJ. 1997. Regulation of NF-kappaB by cyclin-dependent kinases associated with the p300 coactivator. Science 275:523-527. (Pubitemid 27051906)
    • (1997) Science , vol.275 , Issue.5299 , pp. 523-527
    • Perkins, N.D.1    Felzien, L.K.2    Betts, J.C.3    Leung, K.4    Beach, D.H.5    Nabel, G.J.6
  • 58
    • 77952222149 scopus 로고    scopus 로고
    • Origin and diversification of basic-helix-loophelix proteins in plants
    • Pires N, Dolan L 2010. Origin and diversification of basic-helix- loophelix proteins in plants. Mol Biol Evol. 27:862-874.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 862-874
    • Pires, N.1    Dolan, L.2
  • 59
    • 38049147787 scopus 로고    scopus 로고
    • MEF2: A central regulator of diverse developmental programs
    • Potthoff MJ, Olson EN. 2007. MEF2: a central regulator of diverse developmental programs. Development 134:4131-4140.
    • (2007) Development , vol.134 , pp. 4131-4140
    • Potthoff, M.J.1    Olson, E.N.2
  • 61
    • 2942622388 scopus 로고    scopus 로고
    • The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms
    • Rennert J, Coffman JA, Mushegian AR, Robertson AJ. 2003. The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms. BMC Evol Biol. 3:4.
    • (2003) BMC Evol. Biol. , vol.3 , pp. 4
    • Rennert, J.1    Coffman, J.A.2    Mushegian, A.R.3    Robertson, A.J.4
  • 62
    • 77049083205 scopus 로고    scopus 로고
    • The evolution of Runx genes II. The C-terminal Groucho recruitment motif is present in both eumetazoans and homoscleromorphs but absent in a haplosclerid demosponge
    • Robertson AJ, Larroux C, Degnan BM, Coffman JA. 2009. The evolution of Runx genes II. The C-terminal Groucho recruitment motif is present in both eumetazoans and homoscleromorphs but absent in a haplosclerid demosponge.. BMC Res Notes. 2:59.
    • (2009) BMC Res. Notes , vol.2 , pp. 59
    • Robertson, A.J.1    Larroux, C.2    Degnan, B.M.3    Coffman, J.A.4
  • 63
    • 58549103327 scopus 로고    scopus 로고
    • The origins of multicellularity and the early history of the genetic toolkit for animal development
    • Rokas A. 2008. The origins of multicellularity and the early history of the genetic toolkit for animal development. Annu Rev Genet. 42:235-251.
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 235-251
    • Rokas, A.1
  • 64
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England). 19:1572-1574. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 66
  • 68
    • 0037274767 scopus 로고    scopus 로고
    • The ancestral role of Brachyury: Expression of NemBra1 in the basal cnidarian Nematostella vectensis (Anthozoa)
    • Scholz CB, Technau U. 2003. The ancestral role of Brachyury: expression of NemBra1 in the basal cnidarian Nematostella vectensis (Anthozoa). Dev Genes Evol. 212:563-570. (Pubitemid 36221585)
    • (2003) Development Genes and Evolution , vol.212 , Issue.12 , pp. 563-570
    • Scholz, C.B.1    Technau, U.2
  • 71
    • 0344256726 scopus 로고    scopus 로고
    • Churchill, a Zinc Finger Transcriptional Activator, Regulates the Transition between Gastrulation and Neurulation
    • DOI 10.1016/S0092-8674(03)00927-9
    • Sheng G, dos Reis M, Stern CD. 2003. Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation. Cell 115:603-613. (Pubitemid 37506048)
    • (2003) Cell , vol.115 , Issue.5 , pp. 603-613
    • Sheng, G.1    Dos Reis, M.2    Stern, C.D.3
  • 73
    • 77952008658 scopus 로고    scopus 로고
    • Evolutionary genomics of the Fox genes: Origin of gene families and the ancestry of gene clusters
    • Shimeld SM, Degnan B, Luke GN. 2010. Evolutionary genomics of the Fox genes: origin of gene families and the ancestry of gene clusters. Genomics. 95(5):256-260.
    • (2010) Genomics , vol.95 , Issue.5 , pp. 256-260
    • Shimeld, S.M.1    Degnan, B.2    Luke, G.N.3
  • 74
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247. (Pubitemid 33735360)
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 75
    • 0032563288 scopus 로고    scopus 로고
    • LSF and NTF-1 share a conserved DNA recognition motif yet require different oligomerization states to form a stable protein-DNA complex
    • DOI 10.1074/jbc.273.30.19260
    • Shirra MK, Hansen U. 1998. LSF and NTF-1 share a conserved DNA recognition motif yet require different oligomerization states to form a stable protein-DNA complex. J Biol Chem. 273:19260-19268. (Pubitemid 28366326)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.30 , pp. 19260-19268
    • Shirra, M.K.1    Hansen, U.2
  • 77
    • 0033119649 scopus 로고    scopus 로고
    • T-box genes: What they do and how they do it
    • DOI 10.1016/S0168-9525(99)01693-5, PII S0168952599016935
    • Smith J. 1999. T-box genes: what they do and how they do it. Trends Genet. 15:154-158. (Pubitemid 29155438)
    • (1999) Trends in Genetics , vol.15 , Issue.4 , pp. 154-158
    • Smith, J.1
  • 78
    • 77955490196 scopus 로고    scopus 로고
    • The Amphimedon queenslandica genome and the evolution of animal complexity
    • 33 co-authors
    • Srivastava M, Simakov O, Chapman J, et al. (33 co-authors). 2010. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466:720-726.
    • (2010) Nature , vol.466 , pp. 720-726
    • Srivastava, M.1    Simakov, O.2    Chapman, J.3
  • 79
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • DOI 10.1093/bioinformatics/btl446
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690. (Pubitemid 44642609)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 80
    • 23144444421 scopus 로고    scopus 로고
    • AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints
    • DOI 10.1093/nar/gki458
    • Stanke M, Morgenstern B. 2005. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 33: W465-W467. (Pubitemid 44529963)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Stanke, M.1    Morgenstern, B.2
  • 81
    • 34548549334 scopus 로고    scopus 로고
    • The HMG-box: A versatile protein domain occurring in a wide variety of DNA-binding proteins
    • DOI 10.1007/s00018-007-7162-3
    • Stros M, Launholt D, Grasser KD. 2007. The HMG-box: a versatile protein domain occurring in a wide variety of DNA-binding proteins. Cell Mol Life Sci. 64:2590-2606. (Pubitemid 350035606)
    • (2007) Cellular and Molecular Life Sciences , vol.64 , Issue.19-20 , pp. 2590-2606
    • Stros, M.1    Launholt, D.2    Grasser, K.D.3
  • 82
    • 39649123039 scopus 로고    scopus 로고
    • Ancient divergence of animal protein tyrosine kinase genes demonstrated by a gene family tree including choanoflagellate genes
    • Suga H, Sasaki G, Kuma K, Nishiyori H, Hirose N, Su ZH, Iwabe N, Miyata T. 2008. Ancient divergence of animal protein tyrosine kinase genes demonstrated by a gene family tree including choanoflagellate genes. FEBS Lett. 582:815-818.
    • (2008) FEBS Lett. , vol.582 , pp. 815-818
    • Suga, H.1    Sasaki, G.2    Kuma, K.3    Nishiyori, H.4    Hirose, N.5    Su, Z.H.6    Iwabe, N.7    Miyata, T.8
  • 84
    • 64749098852 scopus 로고    scopus 로고
    • The longevity assurance homologue of yeast lag1 (Lass) gene family (review)
    • Teufel A, Maass T, Galle PR, Malik N. 2009. The longevity assurance homologue of yeast lag1 (Lass) gene family (review). Int J Mol Med. 23:135-140.
    • (2009) Int. J. Mol. Med. , vol.23 , pp. 135-140
    • Teufel, A.1    Maass, T.2    Galle, P.R.3    Malik, N.4
  • 85
    • 70449519061 scopus 로고    scopus 로고
    • The evolutionary history of lysine biosynthesis pathways within eukaryotes
    • Torruella G, Suga H, Riutort M, Pereto J, Ruiz-Trillo I. 2009. The evolutionary history of lysine biosynthesis pathways within eukaryotes. J Mol Evol. 69:240-248.
    • (2009) J. Mol. Evol. , vol.69 , pp. 240-248
    • Torruella, G.1    Suga, H.2    Riutort, M.3    Pereto, J.4    Ruiz-Trillo, I.5
  • 86
    • 77950904184 scopus 로고    scopus 로고
    • The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages
    • Traylor-Knowles N, Hansen U, Dubuc TQ, Martindale MQ, Kaufman L, Finnerty JR. 2010. The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages. BMC Evol Biol. 10:101.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 101
    • Traylor-Knowles, N.1    Hansen, U.2    Dubuc, T.Q.3    Martindale, M.Q.4    Kaufman, L.5    Finnerty, J.R.6
  • 87
    • 34848849785 scopus 로고    scopus 로고
    • Forkhead transcription factors II
    • Tuteja G, Kaestner KH. 2007a. Forkhead transcription factors II. Cell 131:192.
    • (2007) Cell. , vol.131 , pp. 192
    • Tuteja, G.1    Kaestner, K.H.2
  • 88
    • 34548631764 scopus 로고    scopus 로고
    • SnapShot: Forkhead transcription factors I
    • Tuteja G, Kaestner KH. 2007b. SnapShot: forkhead transcription factors I. Cell 130:1160.
    • (2007) Cell. , vol.130 , pp. 1160
    • Tuteja, G.1    Kaestner, K.H.2
  • 90
    • 0030832046 scopus 로고    scopus 로고
    • Tissue-specific splicing and functions of the Drosophila transcription factor Grainyhead
    • Uv AE, Harrison EJ, Bray SJ. 1997. Tissue-specific splicing and functions of the Drosophila transcription factor Grainyhead. Mol Cell Biol. 17:6727-6735. (Pubitemid 27451220)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.11 , pp. 6727-6735
    • Uv, A.E.1    Harrison, E.J.2    Bray, S.J.3
  • 91
    • 9244235494 scopus 로고    scopus 로고
    • Lineage-specific and ubiquitous biological roles of the mammalian transcription factor LSF
    • DOI 10.1016/j.gene.2004.08.010, PII S0378111904004949
    • Veljkovic J, Hansen U. 2004. Lineage-specific and ubiquitous biological roles of the mammalian transcription factor LSF. Gene 343:23-40. (Pubitemid 39551027)
    • (2004) Gene , vol.343 , Issue.1 , pp. 23-40
    • Veljkovic, J.1    Hansen, U.2
  • 93
    • 65449119145 scopus 로고    scopus 로고
    • Structural basis for recruitment of CBP/p300 coactivators by STAT1 and STAT2 transactivation domains
    • Wojciak JM, Martinez-Yamout MA, Dyson HJ, Wright PE. 2009. Structural basis for recruitment of CBP/p300 coactivators by STAT1 and STAT2 transactivation domains. EMBO J. 28:948-958.
    • (2009) EMBO J. , vol.28 , pp. 948-958
    • Wojciak, J.M.1    Martinez-Yamout, M.A.2    Dyson, H.J.3    Wright, P.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.