The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms

BMC Evolutionary Biology

Volumn 3, Issue , 2003, Pages

  Rennert, Jessica ^a,b   Coffman, James A ^a   Mushegian, Arcady R ^a   Robertson, Anthony J ^a  

^a STOWERS INSTITUTE FOR MEDICAL RESEARCH   (United States)

^b ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; ANOPHELES GAMBIAE; BILATERIA; CAENORHABDITIS; CAENORHABDITIS ELEGANS; CIONA; CIONA INTESTINALIS; DROSOPHILA MELANOGASTER; ECHINOIDEA; HEXAPODA; INSECTA; MELANOGASTER; METAZOA; STRONGYLOCENTROTUS; STRONGYLOCENTROTUS PURPURATUS; TETRAODONTIDAE; VERTEBRATA;

EID: 2942622388     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-3-4     Document Type: Article

References (20)

1. Kagoshima H, Shigesada K, Satake M, Ito Y, Miyoshi H, Ohki M, Pepling M and Gergen P The Runt domain identifies a new family of heteromeric transcriptional regulators Trends Genet 1993, 9:338-341
2. Crute BE, Lewis AF, Wu Z, Bushweller JH and Speck NA Biochemical and biophysical properties of the core-binding factor alpha2 (AML1) DNA-binding domain J Biol Chem 1996, 271:26251-26260
3. Wheeler JC, Shigesada K, Gergen JP and Ito Y Mechanisms of transcriptional regulation by Runt domain proteins Semin Cell Dev Biol 2000, 11:369-375
4. Coffman JA Runx transcription factors and the developmental balance between cell proliferation and differentiation Cell Biology International 2003, In Press:
5. Lund AH and van Lohuizen M RUNX: a trilogy of cancer genes Cancer Cell 2002, 1:213-215
6. Altschul SF, Gish W, Miller W, Myers EW and Lipman DJ Basic local alignment search tool J Mol Biol 1990, 215:403-410
7. Canon J and Banerjee U Runt and Lozenge function in Drosophila development Semin Cell Dev Biol 2000, 11:327-336
8. Nam S, Jin YH, Li QL, Lee KY, Jeong GB, Ito Y, Lee J and Bae SC Expression pattern, regulation, and biological role of runt domain transcription factor, run, in Caenorhabditis elegans Mol Cell Biol 2002, 22:547-554
9. Coffman JA, Kirchhamer CV, Harrington MG and Davidson EH SpRunt-1, a new member of the runt domain family of transcription factors, is a positive regulator of the aboral ectoderm-specific CyIIIA gene in sea urchin embryos Dev Biol 1996, 174:43-54
10. Robertson AJ, Dickey CE, McCarthy JM and Coffman JA The expression of SpRunt during sea urchin embryogenesis Mech Dev 2002, 117:327-330
11. Eggers JH, Stock M, Fliegauf M, Vonderstrass B and Otto F Genomic characterization of the RUNX2 gene of Fugu rubripes Gene 2002, 291:159-167
12. Levanon D, Glusman G, Bangsow T, Ben-Asher E, Male DA, Avidan N, Bangsow C, Hattori M, Taylor TD, Taudien S, Blechschmidt K, Shimizu N, Rosenthal A, Sakaki Y, Lancet D and Groner Y Architecture and anatomy of the genomic locus encoding the human leukemia-associated transcription factor RUNX1/AML1 Gene 2001, 262:23-33
13. Bangsow C, Rubins N, Glusman G, Bernstein Y, Negreanu V, Goldenberg D, Lotem J, Ben-Asher E, Lancet D, Levanon D and Groner Y The RUNX3 gene - sequence, structure and regulated expression Gene 2001, 279:221-232
14. Tahirov TH, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S and Ogata K Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta Cell 2001, 104:755-767
15. Damen WG, Weller M and Tautz D Expression patterns of hairy, even-skipped, and runt in the spider Cupiennius salei imply that these genes were segmentation genes in a basal arthropod Proc Natl Acad Sci U S A 2000, 97:4515-4519
16. Thompson JD, Higgins DG and Gibson TJ CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22:4673-4680
17. Backstrom S, Wolf-Watz M, Grundstrom C, Hard T, Grundstrom T and Sauer U The RUNX1 Runt Domain at 1.25A Resolution: A Structural Switch and Specifically Bound Chloride Ions Modulate DNA Binding J Mol Biol 2002, 322:259
18. Huelsenbeck JP and Ronquist F MRBAYES: Bayesian inference of phylogenetic trees Bioinformatics 2001, 17:754-755
19. Holland PW, Garcia-Fernandez J, Williams NA and Sidow A Gene duplications and the origins of vertebrate development Dev Suppl 1994, 125-133
20. Komori T, Yagi H, Nomura S, Yamaguchi A, Sasaki K, Deguchi K, Shimizu Y, Bronson RT, Gao YH, Inada M, Sato M, Okamoto R, Kitamura Y, Yoshiki S and Kishimoto T Targeted disruption of Cbfa1 results in a complete lack of bone formation owing to maturational arrest of osteoblasts Cell 1997, 89:755-764