메뉴 건너뛰기




Volumn 25, Issue 4, 2008, Pages 664-672

A phylogenomic investigation into the origin of Metazoa

Author keywords

MAGI; Metazoa; Multicellularity; Opisthokonts; Phylogenomics

Indexed keywords

GUANYLATE KINASE;

EID: 40849104855     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn006     Document Type: Article
Times cited : (196)

References (69)
  • 1
    • 38149124000 scopus 로고    scopus 로고
    • Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning
    • Adamska M, Degnan SM, Green KM, Adamski M, Craigie A, Larroux C, Degnan BM. 2007. Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning. PLoS ONE. 2:e1031.
    • (2007) PLoS ONE , vol.2
    • Adamska, M.1    Degnan, S.M.2    Green, K.M.3    Adamski, M.4    Craigie, A.5    Larroux, C.6    Degnan, B.M.7
  • 2
    • 3042847380 scopus 로고    scopus 로고
    • Evolution of metazoan cell junction proteins: The scaffold protein MAGI and the transmembrane receptor tetraspanin in the demosponge Suberites domuncula
    • Adell T, Gamulin V, Perovic-Ottstadt S, Wiens M, Korzhev M, Muller IM, Muller WE. 2004. Evolution of metazoan cell junction proteins: the scaffold protein MAGI and the transmembrane receptor tetraspanin in the demosponge Suberites domuncula. J Mol Evol. 59:41-50.
    • (2004) J Mol Evol , vol.59 , pp. 41-50
    • Adell, T.1    Gamulin, V.2    Perovic-Ottstadt, S.3    Wiens, M.4    Korzhev, M.5    Muller, I.M.6    Muller, W.E.7
  • 3
    • 2942579439 scopus 로고    scopus 로고
    • AnaBench: A Web/CORBA-based workbench for biomolecular sequence analysis
    • Badidi E, De Sousa C, Lang BF, Burger G. 2003. AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis. BMC Bioinformatics. 4:63.
    • (2003) BMC Bioinformatics , vol.4 , pp. 63
    • Badidi, E.1    De Sousa, C.2    Lang, B.F.3    Burger, G.4
  • 4
    • 0027138675 scopus 로고
    • Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
    • Baldauf SL, Palmer JD. 1993. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc Natl Acad Sci USA. 90:11558-11562.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 5
    • 34347222917 scopus 로고    scopus 로고
    • Sequencing complete mitochondrial and plastid genomes
    • Burger G, Lavrov DV, Forget L, Lang BF. 2007. Sequencing complete mitochondrial and plastid genomes. Nat Protoc. 2:603-614.
    • (2007) Nat Protoc , vol.2 , pp. 603-614
    • Burger, G.1    Lavrov, D.V.2    Forget, L.3    Lang, B.F.4
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 8
    • 1642512352 scopus 로고    scopus 로고
    • The Cambrian "explosion" of metazoans and molecular biology: Would Darwin be satisfied?
    • Conway Morris S. 2003. The Cambrian "explosion" of metazoans and molecular biology: would Darwin be satisfied? Int J Dev Biol. 47:505-515.
    • (2003) Int J Dev Biol , vol.47 , pp. 505-515
    • Conway Morris, S.1
  • 9
    • 33747749115 scopus 로고    scopus 로고
    • Darwin's dilemma: The realities of the Cambrian "explosion
    • Conway Morris S. 2006. Darwin's dilemma: the realities of the Cambrian "explosion". Philos Trans R Soc Lond B Biol Sci. 361:1069-1083.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1069-1083
    • Conway Morris, S.1
  • 11
    • 0031440289 scopus 로고    scopus 로고
    • MAGI-1, a membrane-associated guanylate kinase with a unique arrangement of protein-protein interaction domains
    • Dobrosotskaya I, Guy RK, James GL. 1997. MAGI-1, a membrane-associated guanylate kinase with a unique arrangement of protein-protein interaction domains. J Biol Chem. 272:31589-31597.
    • (1997) J Biol Chem , vol.272 , pp. 31589-31597
    • Dobrosotskaya, I.1    Guy, R.K.2    James, G.L.3
  • 12
    • 0034696822 scopus 로고    scopus 로고
    • MAGI-1 interacts with beta-catenin and is associated with cell-cell adhesion structures
    • Dobrosotskaya IY, James GL. 2000. MAGI-1 interacts with beta-catenin and is associated with cell-cell adhesion structures. Biochem Biophys Res Commun. 270:903-909.
    • (2000) Biochem Biophys Res Commun , vol.270 , pp. 903-909
    • Dobrosotskaya, I.Y.1    James, G.L.2
  • 13
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics. 5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 14
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 15
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool. 27:401-410.
    • (1978) Syst Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 17
    • 0033157330 scopus 로고    scopus 로고
    • Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the Cnidaria
    • Finnerty JR, Martindale MQ. 1999. Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the Cnidaria. Evol Dev. 1:16-23.
    • (1999) Evol Dev , vol.1 , pp. 16-23
    • Finnerty, J.R.1    Martindale, M.Q.2
  • 18
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 19
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A. 1999. CAP3: a DNA sequence assembly program. Genome Res. 9:868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 21
    • 4544229464 scopus 로고    scopus 로고
    • The unicellular ancestry of animal development
    • King N. 2004. The unicellular ancestry of animal development. Dev Cell. 7:313-325.
    • (2004) Dev Cell , vol.7 , pp. 313-325
    • King, N.1
  • 22
    • 0035909922 scopus 로고    scopus 로고
    • A receptor tyrosine kinase from choanoflagellates: Molecular insights into early animal evolution
    • King N, Carroll SB. 2001. A receptor tyrosine kinase from choanoflagellates: molecular insights into early animal evolution. Proc Natl Acad Sci USA. 98:15032-15037.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 15032-15037
    • King, N.1    Carroll, S.B.2
  • 23
    • 0037962406 scopus 로고    scopus 로고
    • Evolution of key cell signaling and adhesion protein families predates animal origins
    • King N, Hittinger CT, Carroll SB. 2003. Evolution of key cell signaling and adhesion protein families predates animal origins. Science. 301:361-363.
    • (2003) Science , vol.301 , pp. 361-363
    • King, N.1    Hittinger, C.T.2    Carroll, S.B.3
  • 25
    • 19944432478 scopus 로고    scopus 로고
    • Unexpected complexity of the Wnt gene family in a sea anemone
    • Kusserow A, Pang K, Sturm C, et al. 2005. Unexpected complexity of the Wnt gene family in a sea anemone. Nature. 433:156-160.
    • (2005) Nature , vol.433 , pp. 156-160
    • Kusserow, A.1    Pang, K.2    Sturm, C.3
  • 26
    • 34347263073 scopus 로고    scopus 로고
    • Purification of mitochondrial and plastid DNA
    • Lang BF, Burger G. 2007. Purification of mitochondrial and plastid DNA. Nat Protoc. 2:652-660.
    • (2007) Nat Protoc , vol.2 , pp. 652-660
    • Lang, B.F.1    Burger, G.2
  • 29
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • Lartillot N, Brinkmann H, Philippe H. 2007. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol. 7(1 Suppl):S4.
    • (2007) BMC Evol Biol , vol.7 , Issue.1 SUPPL.
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 30
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N, Philippe H. 2004. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol. 21:1095-1109.
    • (2004) Mol Biol Evol , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 31
    • 25144447548 scopus 로고    scopus 로고
    • Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements
    • Lavrov DV, Lang BF. 2005. Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements. Syst Biol. 54:651-659.
    • (2005) Syst Biol , vol.54 , pp. 651-659
    • Lavrov, D.V.1    Lang, B.F.2
  • 32
    • 3242801484 scopus 로고    scopus 로고
    • IQPNNI: Moving fast through tree space and stopping in time
    • le SV, Haeseler AV. 2004. IQPNNI: moving fast through tree space and stopping in time. Mol Biol Evol. 21:1565-1571.
    • (2004) Mol Biol Evol , vol.21 , pp. 1565-1571
    • le, S.V.1    Haeseler, A.V.2
  • 34
    • 0036407336 scopus 로고    scopus 로고
    • The class mesomycetozoea: A heterogeneous group of microorganisms at the animal-fungal boundary
    • Mendoza L, Taylor JW, Ajello L. 2002. The class mesomycetozoea: a heterogeneous group of microorganisms at the animal-fungal boundary. Annu Rev Microbiol. 56:315-344.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 315-344
    • Mendoza, L.1    Taylor, J.W.2    Ajello, L.3
  • 35
    • 24644453461 scopus 로고    scopus 로고
    • Cnidarians and ancestral genetic complexity in the animal kingdom
    • Miller DJ, Ball E, Technau U. 2005. Cnidarians and ancestral genetic complexity in the animal kingdom. Trends Genet. 21:536-539.
    • (2005) Trends Genet , vol.21 , pp. 536-539
    • Miller, D.J.1    Ball, E.2    Technau, U.3
  • 37
    • 34249698083 scopus 로고    scopus 로고
    • Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
    • Moreira D, von der Heyden S, Bass D, Lopez-Garcia P, Chao E, Cavalier-Smith T. 2007. Global eukaryote phylogeny: combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata. Mol Phylogenet Evol. 44:255-266.
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 255-266
    • Moreira, D.1    von der Heyden, S.2    Bass, D.3    Lopez-Garcia, P.4    Chao, E.5    Cavalier-Smith, T.6
  • 40
    • 17744379783 scopus 로고    scopus 로고
    • The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa
    • Philip GK, Creevey CJ, McInerney JO. 2005. The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Mol Biol Evol. 22:1175-1184.
    • (2005) Mol Biol Evol , vol.22 , pp. 1175-1184
    • Philip, G.K.1    Creevey, C.J.2    McInerney, J.O.3
  • 41
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
    • Philippe H, Lartillot N, Brinkmann H. 2005. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol Biol Evol. 22:1246-1253.
    • (2005) Mol Biol Evol , vol.22 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 43
    • 33749516796 scopus 로고    scopus 로고
    • Large-scale sequencing and the new animal phylogeny
    • Philippe H, Telford MJ. 2006. Large-scale sequencing and the new animal phylogeny. Trends Ecol Evol. 21:614-620.
    • (2006) Trends Ecol Evol , vol.21 , pp. 614-620
    • Philippe, H.1    Telford, M.J.2
  • 44
    • 34447300950 scopus 로고    scopus 로고
    • Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    • Putnam NH, Srivastava M, Hellsten U, et al. 2007. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science. 317:86-94.
    • (2007) Science , vol.317 , pp. 86-94
    • Putnam, N.H.1    Srivastava, M.2    Hellsten, U.3
  • 46
    • 0345149777 scopus 로고    scopus 로고
    • Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1alpha of Ichthyophonus irregularis
    • Ragan MA, Murphy CA, Rand TG. 2003. Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1alpha of Ichthyophonus irregularis. Mol Phylogenet Evol. 29:550-562.
    • (2003) Mol Phylogenet Evol , vol.29 , pp. 550-562
    • Ragan, M.A.1    Murphy, C.A.2    Rand, T.G.3
  • 48
    • 34047227628 scopus 로고    scopus 로고
    • Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements
    • Rogozin IB, Wolf YI, Carmel L, Koonin EV. 2007. Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements. Mol Biol Evol. 24:1080-1090.
    • (2007) Mol Biol Evol , vol.24 , pp. 1080-1090
    • Rogozin, I.B.1    Wolf, Y.I.2    Carmel, L.3    Koonin, E.V.4
  • 51
    • 33748607486 scopus 로고    scopus 로고
    • Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica
    • Ruiz-Trillo I, Lane CE, Archibald JM, Roger AJ. 2006. Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica. J Eukaryot Microbiol. 53:1-6.
    • (2006) J Eukaryot Microbiol , vol.53 , pp. 1-6
    • Ruiz-Trillo, I.1    Lane, C.E.2    Archibald, J.M.3    Roger, A.J.4
  • 52
    • 0037143719 scopus 로고    scopus 로고
    • A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians
    • Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, Baguna J, Riutort M. 2002. A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. Proc Natl Acad Sci USA. 99:11246-11251.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 11246-11251
    • Ruiz-Trillo, I.1    Paps, J.2    Loukota, M.3    Ribera, C.4    Jondelius, U.5    Baguna, J.6    Riutort, M.7
  • 53
    • 0033583163 scopus 로고    scopus 로고
    • Acoel flatworms: Earliest extant bilaterian Metazoans, not members of Platyhelminthes
    • Ruiz-Trillo I, Riutort M, Littlewood DT, Herniou EA, Baguna J. 1999. Acoel flatworms: earliest extant bilaterian Metazoans, not members of Platyhelminthes. Science. 283:1919-1923.
    • (1999) Science , vol.283 , pp. 1919-1923
    • Ruiz-Trillo, I.1    Riutort, M.2    Littlewood, D.T.3    Herniou, E.A.4    Baguna, J.5
  • 54
    • 33749402982 scopus 로고    scopus 로고
    • The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes. Evidence from the starlet sea anemone, Nematostella vectensis
    • Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR. 2006. The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes. Evidence from the starlet sea anemone, Nematostella vectensis. Genome Biol. 7:R64.
    • (2006) Genome Biol , vol.7
    • Ryan, J.F.1    Burton, P.M.2    Mazza, M.E.3    Kwong, G.K.4    Mullikin, J.C.5    Finnerty, J.R.6
  • 56
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 57
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol. 16:1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 60
    • 0035954250 scopus 로고    scopus 로고
    • Hsp70 sequences indicate that choanoflagellates are closely related to animals
    • Snell EA, Furlong RF, Holland PW. 2001. Hsp70 sequences indicate that choanoflagellates are closely related to animals. Curr Biol. 11:967-970.
    • (2001) Curr Biol , vol.11 , pp. 967-970
    • Snell, E.A.1    Furlong, R.F.2    Holland, P.W.3
  • 61
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 62
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A, Ludwig T, Meier H. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics. 21:456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 65
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer K, Rambaut A. 2002. Inferring confidence sets of possibly misspecified gene trees. Proc R Soc Lond B Biol Sci. 269:137-142.
    • (2002) Proc R Soc Lond B Biol Sci , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 66
    • 33847654232 scopus 로고    scopus 로고
    • Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis
    • Sullivan JC, Ryan JF, Mullikin JC, Finnerty JR. 2007. Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis. Dev Genes Evol. 217:235-239.
    • (2007) Dev Genes Evol , vol.217 , pp. 235-239
    • Sullivan, J.C.1    Ryan, J.F.2    Mullikin, J.C.3    Finnerty, J.R.4
  • 67
    • 27744503847 scopus 로고    scopus 로고
    • Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
    • Technau U, Rudd S, Maxwell P, et al. 2005. Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends Genet. 21:633-639.
    • (2005) Trends Genet , vol.21 , pp. 633-639
    • Technau, U.1    Rudd, S.2    Maxwell, P.3
  • 68
    • 40849118952 scopus 로고    scopus 로고
    • Valentine JW. 2004. On the origin of phyla. Chicago: The University of Chicago Press.
    • Valentine JW. 2004. On the origin of phyla. Chicago: The University of Chicago Press.
  • 69
    • 0345874732 scopus 로고    scopus 로고
    • Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis
    • Wolf YI, Rogozin IB, Koonin EV. 2004. Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis. Genome Res. 14:29-36.
    • (2004) Genome Res , vol.14 , pp. 29-36
    • Wolf, Y.I.1    Rogozin, I.B.2    Koonin, E.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.